genome.fa.s112.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  5  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
917845--917962	34	3.4	34	72	4	103	17	17	13	50	1.77
917760--917984	69	3.3	68	77	3	209	22	19	9	48	1.77
919725--919777	22	2.4	23	78	15	58	62	5	1	30	1.29
920090--920141	14	3.8	14	78	12	54	57	28	0	13	1.36
920089--920256	57	2.9	56	77	8	167	49	26	1	22	1.57
920090--920378	30	9.9	30	75	8	231	47	29	2	21	1.62
920090--920378	59	4.9	58	80	7	284	47	29	2	21	1.62
920238--920286	14	3.4	14	77	5	62	48	34	0	16	1.46
920368--920406	19	2.1	19	100	0	78	33	41	5	20	1.74
920445--920528	29	2.8	30	85	5	100	50	27	0	22	1.50
923658--923702	21	2.0	23	83	12	58	35	2	2	60	1.22
924511--924553	21	2.0	21	90	0	68	51	0	9	39	1.34
924713--924755	17	2.8	15	82	10	52	25	4	0	69	1.07
926496--926535	19	2.2	18	86	4	53	12	5	0	82	0.82
926940--926975	17	2.0	19	89	10	58	30	0	0	69	0.89
926953--926997	23	2.0	23	87	8	67	31	0	0	68	0.89
926952--926999	11	4.2	12	76	23	50	33	0	0	66	0.92
927365--927410	16	2.9	15	87	9	65	43	0	4	52	1.21
927365--927434	31	2.3	31	82	9	81	40	1	7	51	1.38
928229--928303	16	4.3	18	75	11	59	74	13	2	9	1.16
928619--928663	19	2.4	19	92	0	72	66	11	6	15	1.42
941493--941922	149	2.9	147	78	11	457	29	12	20	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
941519--941892	101	3.8	98	79	8	341	27	13	21	38	1.90
941466--941925	48	9.4	49	78	10	281	29	12	20	37	1.89
942845--942963	27	4.4	27	86	0	175	39	21	16	21	1.92
942845--942967	54	2.3	54	92	0	201	39	21	16	23	1.92
943335--943391	16	3.5	16	75	11	53	68	3	0	28	1.06
944413--944455	21	2.0	21	86	4	59	44	0	0	55	0.99
944620--945726	370	3.0	368	90	2	1615	29	13	13	43	1.82
946602--946651	19	2.7	18	78	6	55	42	0	2	56	1.11
946655--946687	17	1.9	17	93	0	57	33	3	6	57	1.38
946694--946790	14	7.2	14	71	19	64	50	3	0	46	1.17
946701--946777	29	2.9	25	77	14	75	48	3	0	48	1.20
946923--946965	20	2.1	21	86	4	61	60	0	4	34	1.17
949050--949124	20	3.8	20	76	11	84	50	9	4	36	1.53
949246--949308	24	2.6	24	82	7	74	55	12	1	30	1.47
949319--949379	24	2.5	24	76	5	61	60	11	1	26	1.40
949411--949452	21	2.0	22	90	4	68	57	7	4	30	1.47
949463--949492	15	1.9	16	93	6	53	66	3	0	30	1.07
949467--949525	23	2.4	25	76	18	61	61	6	0	32	1.22
949543--949603	20	3.0	20	90	0	95	49	9	13	27	1.73
949553--949634	20	4.1	20	85	0	83	47	10	10	30	1.73
949621--949684	32	2.0	33	90	3	103	51	6	7	34	1.56
949617--949676	16	3.7	16	75	2	57	50	8	8	33	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
949665--949704	20	2.0	20	95	0	71	52	5	2	40	1.37
949621--949695	32	2.3	32	86	2	96	52	6	6	34	1.54
950313--950347	16	2.1	16	89	5	52	77	5	0	17	0.96
959985--960018	16	2.1	17	88	5	52	17	11	2	67	1.34
962350--963717	228	6.0	228	83	3	1403	29	22	24	23	1.99
962350--963718	456	3.0	452	84	2	1625	29	22	24	23	1.99
967978--968215	93	2.6	93	86	5	320	30	19	14	35	1.92
968183--968691	99	5.1	99	90	0	793	27	21	12	38	1.90
968174--968691	198	2.6	198	96	0	928	27	21	12	37	1.90
974434--974475	17	2.4	18	80	8	50	61	2	0	35	1.09
981715--981744	15	1.9	16	93	6	53	73	3	6	16	1.18
986676--986737	31	2.0	31	93	0	106	32	17	4	45	1.70
1003270--1003302	2	16.5	2	93	0	57	51	45	0	3	1.16
1008657--1008693	2	18.5	2	94	0	65	51	2	0	45	1.15
1012032--1012253	59	3.7	58	82	8	268	37	12	6	43	1.69
1012032--1012274	118	2.0	120	84	6	316	38	11	6	43	1.68
1012266--1012333	14	4.6	14	72	18	50	76	1	4	17	1.03
1012271--1012332	18	3.4	17	76	12	52	79	1	3	16	0.95
1013175--1013217	9	4.7	9	81	13	52	81	4	0	13	0.84
1013174--1013217	18	2.3	20	92	7	74	81	4	0	13	0.83
1013269--1013507	7	33.1	7	69	20	52	65	2	4	27	1.23
1013375--1013506	20	6.8	20	69	22	59	66	1	3	28	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1013399--1013499	15	6.9	15	71	21	54	67	1	2	27	1.16
1013400--1013476	22	3.5	22	74	13	63	66	1	3	28	1.17
1015745--1015771	13	2.1	13	100	0	54	14	0	33	51	1.43
1027045--1027078	2	17.0	2	87	0	50	50	5	0	44	1.26
1029039--1029097	29	2.1	28	80	3	64	35	11	1	50	1.49
1030864--1030902	2	20.0	2	84	5	53	51	2	0	46	1.14
1031753--1031796	22	2.0	23	86	8	65	40	4	4	50	1.43
1033719--1033764	23	2.0	23	83	8	58	60	0	0	39	0.97
1035134--1035166	3	11.0	3	93	0	57	36	0	0	63	0.95
1035209--1035250	16	2.5	17	78	17	52	23	2	9	64	1.35
1040431--1040496	34	2.1	30	84	15	82	51	10	3	34	1.52
1040766--1040795	16	1.9	15	93	6	51	33	3	10	53	1.51
1041376--1041415	20	2.0	21	90	5	64	62	7	0	30	1.23
1047835--1047876	11	3.6	11	84	12	57	38	0	2	59	1.10
1054325--1054400	32	2.5	32	82	6	86	52	5	1	40	1.32
1056090--1056218	32	4.1	32	70	14	81	52	0	0	45	1.11
1056184--1056230	24	2.0	24	87	8	69	44	0	0	55	0.99
1056196--1056243	18	2.7	17	87	6	60	43	4	0	52	1.20
1058752--1058793	18	2.3	19	95	4	77	69	0	0	30	0.89
1059283--1059345	28	2.2	29	82	2	74	47	1	6	44	1.38
1069074--1069115	20	2.0	20	86	4	57	73	0	19	7	1.05
1069169--1069212	21	2.1	21	84	12	56	45	2	4	47	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1069231--1069324	35	2.7	34	78	14	102	58	0	3	38	1.14
1070038--1070098	22	2.7	23	78	12	65	81	6	8	3	0.95
1071177--1071241	22	3.0	21	75	16	71	66	6	1	26	1.24
1071341--1071371	16	2.0	16	93	6	55	67	0	0	32	0.91
1071580--1071698	28	4.1	28	88	3	121	45	31	3	19	1.67
1071528--1071651	14	8.9	13	71	16	72	49	29	0	20	1.55
1071643--1071697	16	3.6	16	72	18	62	41	36	5	16	1.71
1071596--1071762	30	5.7	29	81	7	135	46	32	2	19	1.63
1071803--1071889	15	5.8	15	71	20	58	55	24	0	20	1.44
1071832--1071891	22	2.7	23	71	10	61	55	26	0	18	1.43
1073943--1074854	156	5.8	156	94	3	1562	38	18	14	29	1.90
1074853--1074943	16	5.6	16	71	18	73	79	7	2	10	1.02
1074900--1074947	1	48.0	1	87	0	51	89	4	0	6	0.58
1074904--1074941	13	2.8	13	96	4	67	86	5	0	7	0.69
1074887--1074945	31	1.9	31	96	0	109	86	5	0	8	0.70
1074887--1074942	14	3.7	15	86	13	71	85	5	0	8	0.73
1074850--1074947	18	5.5	18	76	9	76	80	7	2	10	0.97
1075243--1075288	18	2.5	19	82	3	58	21	19	30	28	1.98
1075910--1075938	3	9.7	3	100	0	58	68	0	0	31	0.89
1076030--1076066	18	2.1	18	90	5	58	89	0	10	0	0.49
1076109--1076187	20	4.0	20	96	0	140	21	29	30	18	1.97
1076290--1076404	7	16.4	7	80	12	85	6	0	7	86	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1076303--1076404	1	102.0	1	75	0	87	4	0	7	87	0.67
1076290--1076404	29	4.2	26	80	13	115	6	0	7	86	0.72
1076412--1077065	41	16.0	40	87	10	916	38	21	17	22	1.93
1076412--1077044	82	7.7	83	94	3	1099	38	21	17	22	1.93
1078077--1078155	8	9.2	8	75	20	63	11	17	0	70	1.15
1078082--1078186	10	11.8	9	73	19	78	11	12	0	75	1.10
1078110--1078174	17	3.8	17	81	6	69	12	10	0	76	1.01
1078099--1078172	26	2.8	25	80	10	76	12	12	0	75	1.04
1078143--1078184	18	2.3	18	91	0	66	9	2	2	85	0.77
1079845--1079914	18	3.9	18	85	12	92	84	5	0	10	0.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195