genome.fa.s112.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  30  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6844323--6844369	24	1.9	25	91	4	78	46	2	6	44	1.40
6844323--6844387	26	2.6	24	80	7	67	43	1	9	46	1.45
6844458--6844486	8	3.8	8	90	9	51	86	0	0	13	0.58
6844793--6844881	6	13.8	6	74	17	72	17	2	4	75	1.08
6844798--6844866	13	5.3	13	75	10	61	18	1	2	76	0.98
6844799--6844879	19	4.2	18	74	21	67	18	2	3	75	1.07
6844804--6844894	41	2.2	42	83	9	109	19	3	4	72	1.16
6845267--6845354	45	2.0	44	86	8	126	53	5	13	27	1.62
6849367--6849402	11	3.1	11	92	8	54	86	0	2	11	0.68
6850671--6850728	22	2.6	22	81	8	73	37	6	15	39	1.74
6850792--6851068	108	2.6	108	91	0	437	35	15	15	32	1.90
6851304--6851616	41	7.7	41	81	6	296	23	15	15	45	1.84
6851304--6851607	123	2.5	122	82	5	357	22	15	15	46	1.84
6851948--6851986	19	2.0	20	85	5	53	20	5	0	74	1.01
6853031--6853061	13	2.4	13	100	0	62	58	6	6	29	1.48
6853266--6853419	53	2.9	54	80	3	177	55	7	9	26	1.59
6854629--6854676	25	1.9	25	86	0	69	37	22	2	37	1.66
6855932--6855971	12	3.4	12	93	3	64	10	7	0	82	0.84
6855997--6856038	18	2.3	18	80	8	50	30	7	2	59	1.37
6856074--6856111	16	2.5	16	83	8	53	15	0	2	81	0.80
6856200--6856244	18	2.5	19	82	17	60	4	6	4	84	0.87
6856183--6856240	27	2.1	27	84	6	73	6	6	3	82	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6858491--6858520	15	1.9	16	93	6	53	23	3	0	73	0.98
6858652--6858692	18	2.3	18	87	8	57	34	4	0	60	1.18
6860711--6860780	5	13.8	5	82	8	70	51	0	5	42	1.25
6861072--6861108	16	2.2	17	86	13	51	70	5	8	16	1.30
6863881--6863913	13	2.4	14	90	5	50	21	0	0	78	0.75
6864119--6864179	24	2.3	27	81	13	65	34	0	3	62	1.12
6865667--6865693	2	13.5	2	100	0	54	51	0	0	48	1.00
6866329--6866373	21	2.2	20	84	7	56	44	0	8	46	1.34
6866895--6866928	16	2.1	16	88	0	50	70	11	17	0	1.16
6869888--6869962	22	3.1	22	80	16	78	57	0	1	41	1.07
6869913--6869976	15	4.5	15	81	13	73	56	0	1	42	1.09
6869952--6870004	23	2.5	20	85	11	63	62	0	1	35	1.06
6869902--6869998	15	6.0	15	73	17	61	59	0	1	39	1.04
6869968--6870004	9	4.0	10	83	16	53	67	0	0	32	0.91
6870053--6870101	17	2.8	17	81	9	55	48	0	0	51	1.00
6870038--6870114	16	4.6	16	72	18	50	49	1	0	49	1.09
6870154--6870188	17	1.9	19	88	11	56	42	0	2	54	1.15
6870628--6870671	23	1.9	23	81	9	54	45	0	0	54	0.99
6870734--6870764	15	2.1	15	93	0	53	54	6	3	35	1.42
6874828--6875282	227	2.0	226	98	0	883	40	11	9	39	1.72
6884783--6884830	24	2.0	24	84	8	62	47	12	14	25	1.79
6893145--6893179	2	17.5	2	100	0	70	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6894413--6894451	21	1.9	20	84	5	51	20	15	10	53	1.70
6894690--6894737	18	3.1	15	78	18	53	25	14	6	54	1.63
6895129--6895207	10	8.1	10	68	25	53	46	10	1	41	1.45
6895129--6895207	18	4.6	18	78	15	71	46	10	1	41	1.45
6899300--6899351	26	2.0	26	84	0	68	23	0	5	71	1.07
6899379--6899417	16	2.5	15	87	4	60	82	0	5	12	0.83
6899379--6899417	15	2.5	16	83	4	53	82	0	5	12	0.83
6899938--6899972	17	2.1	17	89	10	54	25	5	11	57	1.56
6899969--6900006	20	2.0	20	90	10	62	34	2	10	52	1.50
6900012--6900134	21	5.5	21	70	15	68	32	2	10	54	1.48
6900012--6900135	47	2.7	47	85	6	146	33	2	10	54	1.48
6900012--6900172	24	7.0	24	73	14	126	32	2	9	54	1.47
6900302--6900372	24	3.0	23	78	12	81	26	4	12	56	1.55
6900302--6900359	23	2.5	23	86	8	73	25	5	13	55	1.59
6900345--6900412	36	1.9	35	88	5	102	35	7	7	50	1.58
6900342--6900451	18	6.0	18	70	17	75	35	6	9	49	1.60
6900491--6900603	38	2.9	39	80	10	108	32	6	13	47	1.67
6908673--6908714	17	2.5	17	88	7	59	19	0	2	78	0.86
6908726--6908924	4	49.2	4	69	14	65	29	3	2	65	1.21
6908799--6908898	28	3.3	32	72	12	88	32	2	3	63	1.21
6908812--6908909	21	4.9	20	78	18	82	29	3	2	65	1.19
6908804--6908886	25	3.1	26	76	18	82	32	1	1	65	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6908671--6908886	12	17.8	12	67	23	73	26	3	2	67	1.20
6908856--6908949	38	2.5	36	81	11	100	23	3	2	71	1.12
6908872--6908943	21	3.6	20	80	16	78	22	4	2	70	1.17
6908871--6908926	17	3.1	17	78	16	58	23	5	1	69	1.18
6908895--6908937	17	2.4	17	80	7	50	20	4	2	72	1.14
6908932--6908991	12	4.7	12	75	20	50	10	8	1	80	0.99
6909857--6909951	5	18.6	5	72	18	63	14	5	3	76	1.08
6909869--6909952	6	13.8	6	67	20	50	13	5	2	78	1.03
6909869--6909951	17	4.9	17	70	15	57	13	6	2	78	1.04
6909868--6909954	21	4.2	20	77	17	74	12	5	2	79	1.00
6909963--6910535	118	4.9	118	86	5	723	43	8	12	35	1.72
6909965--6910535	59	9.7	58	82	8	656	43	8	12	35	1.72
6910413--6910451	15	2.4	17	83	12	55	48	5	0	46	1.24
6910445--6910536	27	3.3	27	65	21	71	40	5	15	39	1.70
6911270--6911311	17	2.5	17	88	7	59	19	0	2	78	0.86
6911324--6911365	15	2.7	15	85	7	57	26	2	4	66	1.23
6911324--6911555	4	59.2	4	66	16	53	26	3	3	67	1.21
6911436--6911473	3	12.7	3	83	10	51	34	0	0	65	0.93
6911472--6911542	20	3.5	20	77	7	81	19	4	2	73	1.13
6911453--6911549	41	2.3	40	83	11	117	21	3	2	73	1.08
6911539--6911589	20	2.5	20	90	9	77	11	7	7	72	1.28
6912374--6912399	4	6.5	4	100	0	52	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6912431--6912512	17	4.9	17	70	15	55	13	6	3	76	1.10
6912417--6912512	5	18.6	5	70	16	54	14	6	4	75	1.16
6912525--6912984	59	7.7	58	77	11	432	45	8	11	35	1.69
6915444--6915494	26	2.0	26	88	0	75	62	3	7	25	1.40
6915847--6915954	56	2.0	56	85	3	139	32	9	14	43	1.78
6916137--6916174	17	2.1	19	90	9	62	57	0	0	42	0.98
6923853--6923892	21	1.9	21	85	10	55	35	15	10	40	1.80
6926060--6926098	18	2.2	18	86	4	53	12	5	0	82	0.83
6927938--6928113	87	2.0	87	89	0	271	43	6	17	31	1.75
6931538--6931570	12	2.6	13	85	9	50	21	9	0	69	1.15
6932388--6932530	50	3.0	46	83	9	171	45	9	4	39	1.59
6939025--6939183	84	1.9	84	82	2	203	31	14	16	37	1.89
6940334--6940656	100	3.2	98	81	10	350	43	7	9	39	1.65
6940334--6940653	101	3.2	98	82	7	358	43	7	10	39	1.66
6942096--6942167	22	3.3	22	72	12	67	48	8	8	34	1.63
6942234--6942331	51	1.9	51	80	0	115	48	7	10	33	1.64
6942433--6942505	22	3.3	22	75	7	60	56	6	8	28	1.55
6942448--6942591	22	6.7	22	70	12	93	52	6	7	33	1.57
6942511--6942616	44	2.5	44	80	7	112	49	6	8	35	1.60
6942529--6942613	22	3.9	21	73	6	71	45	5	9	38	1.61
6942680--6942722	11	3.9	11	79	11	52	51	4	6	37	1.50
6942680--6942743	22	3.0	21	86	9	76	51	4	7	35	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6942779--6942842	29	2.2	30	86	8	87	48	9	9	32	1.67
6942756--6942858	51	2.0	53	82	3	129	47	9	8	33	1.67
6942809--6942890	22	3.7	22	80	6	85	46	6	10	36	1.64
6942925--6943024	22	4.5	22	82	5	85	53	5	6	36	1.48
6942975--6943024	11	4.5	11	82	0	64	50	2	4	44	1.32
6943183--6943232	22	2.3	22	78	0	55	46	10	6	38	1.62
6943228--6943277	22	2.2	22	78	3	55	52	12	8	28	1.66
6943962--6943986	13	1.9	13	100	0	50	48	20	8	24	1.76
6944169--6944212	20	2.2	20	91	0	70	47	29	2	20	1.62
6945025--6945411	102	3.8	102	78	5	370	41	16	8	33	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195