genome.fa.s112.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  57  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11758257--11758309	3	17.3	3	92	3	88	30	0	1	67	1.01
11759327--11759369	17	2.5	17	88	0	59	41	0	0	58	0.98
11760460--11760518	26	2.3	25	80	13	66	25	10	10	54	1.65
11760418--11760566	72	2.1	72	89	0	226	28	8	13	49	1.71
11760439--11760619	72	2.5	71	82	6	204	29	10	13	46	1.76
11760439--11760634	71	2.7	71	81	5	216	29	11	12	46	1.76
11760574--11760669	46	2.1	45	88	5	140	28	11	15	44	1.81
11761614--11761661	23	2.1	23	88	0	69	37	10	10	41	1.74
11761807--11762043	18	13.4	18	68	11	105	28	14	15	41	1.86
11761802--11762062	36	7.4	36	69	11	155	28	14	14	41	1.86
11761821--11762014	70	2.8	70	80	5	196	28	13	16	41	1.87
11761802--11761988	52	3.6	52	74	11	150	29	14	16	40	1.87
11762085--11762146	28	2.2	27	77	8	70	25	12	8	53	1.66
11762091--11762145	28	1.9	29	85	3	76	29	14	9	47	1.75
11763824--11763896	20	3.7	20	86	0	110	31	5	10	52	1.59
11763903--11763927	3	8.3	3	100	0	50	32	0	0	68	0.90
11763824--11763906	40	2.1	40	90	0	130	30	4	10	54	1.56
11763937--11763978	13	3.3	13	81	15	52	19	7	14	59	1.57
11765178--11765220	22	2.0	22	86	13	63	11	34	2	51	1.51
11766711--11766777	26	2.6	26	85	4	91	47	5	20	25	1.73
11768546--11768582	19	1.9	19	100	0	74	18	5	0	75	0.99
11769130--11769184	20	2.8	21	81	10	71	52	25	3	18	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11769536--11769586	25	2.0	25	88	7	77	60	5	0	33	1.21
11769528--11769606	28	2.9	28	83	9	83	60	6	1	31	1.29
11769532--11769573	3	14.7	3	85	9	61	66	2	0	30	1.04
11769977--11770178	64	3.1	64	80	3	183	43	14	20	21	1.88
11770015--11770224	65	3.3	64	75	4	199	42	15	20	20	1.88
11771413--11771442	10	2.9	10	95	5	51	10	10	0	80	0.92
11778009--11778083	28	3.0	23	79	15	71	69	0	1	29	0.97
11777994--11778083	27	3.4	28	79	10	93	68	1	2	27	1.08
11778050--11778097	19	2.6	19	86	3	62	77	0	4	18	0.93
11778927--11778968	3	14.0	3	100	0	84	66	0	0	33	0.92
11782828--11782929	26	3.9	26	83	8	100	78	0	9	10	1.02
11782825--11782937	25	4.3	26	79	14	76	76	0	10	12	1.08
11782825--11782929	9	11.9	9	81	9	119	77	0	10	11	1.05
11782825--11782929	17	5.9	18	80	11	119	77	0	10	11	1.05
11782863--11782951	26	3.4	27	83	9	103	74	0	12	13	1.08
11782850--11782951	17	6.1	15	77	17	62	73	0	11	13	1.15
11788651--11788725	28	3.0	23	79	15	71	69	0	1	29	0.97
11788636--11788725	27	3.4	28	79	10	93	68	1	2	27	1.08
11788692--11788739	19	2.6	19	86	3	62	77	0	4	18	0.93
11793481--11793593	35	3.2	34	80	12	122	76	0	11	11	1.08
11793506--11793623	9	14.0	8	83	13	116	72	1	12	12	1.19
11793481--11793609	9	14.9	9	79	11	128	75	1	11	11	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11793557--11793612	8	7.1	7	79	20	58	71	1	12	14	1.23
11794758--11794827	33	2.1	33	81	0	77	30	15	20	34	1.93
11795050--11795806	43	17.5	43	78	5	522	27	14	13	44	1.83
11795050--11795800	87	8.7	86	75	7	398	27	14	13	44	1.83
11795056--11795727	131	5.2	131	74	8	397	28	14	12	44	1.83
11795136--11795812	131	5.2	128	76	7	463	27	14	13	44	1.83
11796920--11796987	26	2.7	26	79	4	68	38	8	7	45	1.63
11797235--11797336	45	2.2	48	85	7	147	58	6	6	27	1.49
11798333--11798374	13	3.3	13	81	15	52	71	0	0	28	0.86
11800908--11800957	11	4.4	11	79	18	57	30	6	0	64	1.18
11800985--11801015	9	3.3	9	95	4	53	67	0	0	32	0.91
11800988--11801016	10	3.0	10	95	5	51	62	0	0	37	0.96
11800997--11801068	28	2.6	27	79	14	76	54	0	2	43	1.15
11804062--11804094	15	2.1	16	88	5	50	6	9	15	69	1.34
11805095--11805122	2	14.0	2	100	0	56	50	0	0	50	1.00
11805150--11805193	23	1.9	23	95	0	79	61	0	15	22	1.34
11805977--11806019	2	21.5	2	90	0	68	44	0	4	51	1.22
11806679--11806711	2	16.5	2	100	0	66	48	0	0	51	1.00
11806724--11806777	4	13.8	4	88	3	65	27	1	20	50	1.59
11812763--11813246	144	3.4	142	79	10	439	33	14	12	39	1.83
11812769--11813306	143	3.7	141	79	6	483	33	13	11	41	1.81
11813658--11813716	15	4.0	14	78	8	55	83	8	6	1	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11813658--11813709	11	4.5	12	81	11	56	84	7	7	0	0.77
11815889--11816758	436	2.0	438	98	0	1690	33	8	11	46	1.71
11817365--11817428	29	2.2	29	94	0	110	28	21	17	32	1.96
11824883--11824920	15	2.5	16	87	8	53	63	2	0	34	1.09
11826454--11826492	2	19.5	2	100	0	78	51	0	48	0	1.00
11837636--11837698	27	2.3	26	89	7	92	68	0	1	30	0.99
11837643--11837692	22	2.4	22	86	6	77	72	0	0	28	0.86
11837643--11837695	5	10.2	5	86	8	70	71	0	0	28	0.86
11837766--11837803	18	2.2	18	85	4	51	44	0	2	52	1.14
11847183--11847781	301	2.0	300	81	4	697	28	14	19	37	1.91
11850696--11850752	15	3.6	15	80	15	53	10	10	1	77	1.07
11856042--11856129	37	2.4	37	84	7	133	29	10	21	38	1.86
11858033--11858208	92	1.9	89	94	3	307	48	5	19	26	1.69
11858337--11858575	13	18.1	14	68	11	96	17	2	33	46	1.60
11858336--11858575	26	9.2	25	71	12	115	17	2	33	46	1.60
11858336--11858575	7	36.6	7	71	11	98	17	2	33	46	1.60
11858336--11858575	19	12.2	19	66	12	101	17	2	33	46	1.60
11862899--11862954	26	2.2	26	86	0	76	35	19	10	33	1.87
11865466--11865625	62	2.6	62	86	0	230	36	6	14	42	1.72
11865465--11865674	62	3.4	62	81	5	183	35	8	13	42	1.75
11873584--11874232	215	2.9	218	79	9	580	33	9	12	44	1.74
11873802--11874467	234	2.8	235	84	5	823	31	9	13	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11878074--11878662	205	2.9	202	81	4	659	35	13	11	38	1.82
11883132--11883564	216	2.0	215	84	3	557	30	12	26	30	1.93
11887494--11887537	18	2.4	18	80	0	52	38	6	0	54	1.27
11888179--11888240	30	2.1	28	85	5	79	20	19	27	32	1.97
11889405--11889439	16	2.2	16	90	5	54	31	14	5	48	1.67
11890095--11890208	20	5.8	19	78	7	93	14	2	33	49	1.58
11890104--11890208	39	2.7	38	74	4	102	14	1	35	48	1.55
11890199--11890248	21	2.5	19	84	12	64	22	0	32	46	1.52
11891428--11891457	10	3.0	10	90	0	51	36	20	13	30	1.90
11897343--11897375	16	2.0	17	88	5	50	27	0	9	63	1.24
11905784--11905816	16	2.0	17	88	5	50	42	6	18	33	1.75
11905965--11905997	17	1.9	17	93	0	57	54	12	9	24	1.66
11914262--11914296	10	3.6	10	92	3	54	25	8	14	51	1.70
11918711--11918755	16	2.7	17	83	13	58	24	6	6	62	1.44
11918939--11919347	212	1.9	214	81	3	493	32	11	6	49	1.65
11920342--11920388	18	2.7	18	80	9	53	21	2	10	65	1.33
11920372--11920756	212	1.8	215	80	6	478	31	10	5	51	1.59
11920441--11921454	514	2.0	512	80	7	1135	30	10	6	53	1.59
11921049--11921545	216	2.3	215	80	3	532	30	9	6	53	1.58
11923216--11923246	10	2.9	11	90	9	55	35	0	6	58	1.24
11923208--11923246	21	1.9	20	89	5	60	38	0	5	56	1.22
11923941--11923967	13	2.1	13	100	0	54	48	22	0	29	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11924699--11924747	25	2.0	25	91	0	80	44	16	6	32	1.72
11933510--11933550	2	20.5	2	100	0	82	48	0	0	51	1.00
11933755--11933789	15	2.2	16	90	5	54	57	5	0	37	1.23
11934140--11934187	24	2.0	24	88	8	71	33	18	6	41	1.76
11935348--11935504	53	3.0	53	87	7	223	38	9	5	45	1.61
11935348--11935504	51	3.0	51	89	3	199	38	9	5	45	1.61
11936187--11936233	17	2.8	17	81	12	62	74	0	6	19	1.03
11936183--11936233	20	2.5	20	75	15	59	74	0	7	17	1.05
11937571--11937636	33	2.0	33	93	0	114	43	16	16	22	1.87
11937604--11937693	39	2.3	40	90	1	137	47	17	12	22	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195