genome.fa.s112.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  91  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16830116--16830168	26	2.0	26	88	0	79	24	22	20	32	1.98
16831013--16831065	26	2.0	26	88	0	79	26	24	16	32	1.97
16829396--16831766	897	2.7	886	88	2	3405	26	24	22	26	2.00
16831409--16832190	416	1.9	417	87	4	1169	31	23	19	25	1.98
16833214--16833269	26	2.2	26	96	0	103	28	26	17	26	1.98
16833456--16833498	12	3.6	12	90	0	68	11	32	18	37	1.87
16834145--16834197	26	2.0	26	92	0	88	26	22	20	30	1.98
16835037--16835089	26	2.0	26	96	0	97	26	24	20	28	1.99
16835907--16835958	26	2.0	26	92	3	88	28	25	19	26	1.98
16836798--16836850	26	2.0	26	96	0	97	26	24	22	26	2.00
16831819--16839288	896	8.3	891	85	5	9175	26	24	23	25	2.00
16837699--16837751	26	2.0	26	96	0	97	28	26	18	26	1.98
16838806--16839780	492	2.0	493	95	1	1749	31	21	18	27	1.97
16839978--16840030	26	2.0	26	96	0	97	26	24	20	28	1.99
16840847--16840898	26	2.0	26	92	3	88	28	25	19	26	1.98
16841735--16841787	26	2.0	26	96	0	97	26	24	22	26	2.00
16842636--16842688	26	2.0	26	88	0	79	28	26	16	28	1.97
16839297--16843341	896	4.6	889	85	4	5346	26	24	23	25	2.00
16845123--16845175	26	2.0	26	96	0	97	26	26	22	24	2.00
16843366--16845893	904	2.8	898	87	3	3621	27	24	23	24	2.00
16845867--16845919	26	2.0	26	96	0	97	28	26	18	26	1.98
16846710--16846939	126	1.8	126	83	3	302	26	27	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16847788--16847840	26	2.0	26	96	0	97	28	26	18	26	1.98
16846824--16852371	899	6.2	892	84	5	6852	25	25	24	25	2.00
16852007--16852032	12	2.2	12	100	0	52	0	65	26	7	1.20
16852641--16852693	26	2.0	26	96	0	97	26	26	18	28	1.98
16853529--16853582	26	2.1	26	96	0	99	25	22	20	31	1.98
16854434--16854486	26	2.0	26	89	7	81	28	26	18	26	1.98
16854907--16854958	26	2.0	26	85	7	70	32	25	13	28	1.93
16855809--16855861	26	2.0	26	92	0	88	28	24	18	28	1.98
16854661--16858387	902	4.1	897	85	4	4748	25	25	23	25	2.00
16856719--16856771	26	2.0	26	96	0	97	28	26	18	26	1.98
16857618--16857670	26	2.0	26	92	0	88	26	26	18	28	1.98
16857644--16859118	713	2.1	710	88	2	2168	27	24	23	25	2.00
16858329--16862846	921	5.1	868	84	5	5353	25	24	24	25	2.00
16861005--16861057	26	2.0	26	96	0	97	28	26	16	28	1.97
16861926--16861978	26	2.0	26	88	0	79	26	20	22	30	1.98
16863974--16864030	26	2.1	27	93	3	98	28	24	19	28	1.98
16863488--16864102	313	2.0	313	83	3	772	21	27	26	24	1.99
16863802--16865893	890	2.3	894	83	4	2592	25	25	23	25	2.00
16867994--16868037	11	4.0	11	87	0	61	20	31	34	13	1.92
16867019--16870407	898	3.9	882	85	6	4454	25	24	24	25	2.00
16871226--16871278	26	2.0	26	100	0	106	26	26	20	26	1.99
16870352--16878728	902	9.4	903	86	2	10729	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16872128--16872180	26	2.0	26	100	0	106	26	26	20	26	1.99
16873506--16873562	26	2.2	26	83	0	69	59	10	7	22	1.54
16873915--16873967	26	2.0	26	92	0	88	28	24	18	28	1.98
16875699--16875751	26	2.0	26	96	0	97	26	24	20	28	1.99
16876597--16876649	26	2.0	26	92	0	88	26	22	22	28	1.99
16877496--16877551	26	2.2	26	96	0	103	28	23	19	28	1.98
16877972--16878023	26	2.0	26	88	0	77	53	15	9	21	1.70
16878369--16878419	26	2.0	26	88	0	75	29	19	19	31	1.97
16879869--16879919	26	2.0	26	96	0	93	27	25	15	31	1.96
16880616--16881019	185	2.2	185	82	1	497	22	27	26	23	1.99
16882332--16882365	11	3.1	11	86	0	50	52	5	2	38	1.41
16882580--16882632	26	2.0	26	96	0	97	28	26	18	26	1.98
16880701--16882645	905	2.2	907	81	7	2448	25	24	23	26	2.00
16883087--16883139	26	2.0	26	100	0	106	26	26	20	26	1.99
16886851--16886903	26	2.0	26	88	0	79	30	28	16	24	1.97
16887735--16887787	26	2.0	26	92	0	88	26	26	20	26	1.99
16888615--16888667	26	2.0	26	88	0	79	33	24	13	28	1.93
16890414--16890466	26	2.0	26	92	0	88	24	24	24	26	2.00
16885990--16891396	902	6.1	895	85	3	6842	25	23	24	25	2.00
16891316--16891368	26	2.0	26	92	0	88	28	24	20	26	1.99
16892287--16892319	11	3.0	11	100	0	66	27	36	27	9	1.87
16893062--16893114	26	2.0	26	100	0	106	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16893966--16894018	26	2.0	26	96	0	97	28	26	18	26	1.98
16891390--16896589	941	5.8	904	84	5	6207	26	24	23	25	2.00
16895522--16895546	12	2.1	12	100	0	50	0	64	28	8	1.22
16895721--16895771	26	2.0	26	92	0	84	23	19	27	29	1.98
16895768--16895862	47	2.0	47	87	0	136	24	23	34	17	1.96
16903711--16903766	26	2.2	26	96	0	103	28	23	19	28	1.98
16904506--16904558	26	2.0	26	85	0	70	28	18	20	32	1.97
16905770--16905822	26	2.0	26	92	0	88	30	26	18	24	1.98
16907559--16907611	26	2.0	26	92	0	88	32	28	15	24	1.95
16904844--16924621	890	21.9	886	80	8	19914	25	24	24	25	2.00
16908441--16908493	26	2.0	26	96	0	97	28	26	18	26	1.98
16909329--16909381	26	2.0	26	88	0	79	28	26	18	26	1.98
16910618--16910670	26	2.0	26	92	0	88	30	24	18	26	1.98
16913106--16913158	26	2.0	26	96	0	97	26	26	18	28	1.98
16914008--16914060	26	2.0	26	85	7	72	28	24	18	28	1.98
16914898--16914950	26	2.0	26	88	0	79	28	24	20	26	1.99
16915790--16915842	26	2.0	26	85	7	72	28	24	18	28	1.98
16917584--16917638	26	2.1	27	83	10	69	23	25	18	32	1.97
16918473--16918525	26	2.0	26	96	0	97	32	22	18	26	1.97
16919373--16919425	26	2.0	26	100	0	106	26	22	20	30	1.98
16910775--16924621	896	15.5	897	86	3	18069	25	24	24	25	2.00
16922063--16922113	26	2.0	26	88	0	75	31	31	11	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16922539--16922594	26	2.2	26	83	0	67	58	7	7	26	1.50
16922949--16923001	26	2.0	26	96	0	97	26	28	20	24	1.99
16923821--16923874	26	2.1	26	85	0	72	31	24	18	25	1.97
16923856--16925318	722	2.0	718	87	2	2087	26	25	23	25	2.00
16928482--16931323	897	3.1	901	83	7	3505	25	24	25	25	2.00
16930260--16930338	26	3.0	26	98	0	149	26	18	26	27	1.98
16929365--16931235	923	2.0	930	88	3	2761	25	24	24	25	2.00
16931771--16931821	26	2.0	26	84	0	66	31	11	25	31	1.92
16932675--16932725	26	2.0	26	96	0	93	27	13	29	29	1.94
16933578--16933630	26	2.0	26	92	0	88	26	20	24	28	1.99
16931332--16941620	883	11.5	898	85	4	12854	25	24	24	25	2.00
16934473--16934522	26	1.9	26	95	0	91	28	18	26	28	1.98
16935369--16935421	26	2.0	26	92	0	88	26	20	26	26	1.99
16936241--16936293	26	2.0	26	96	0	97	28	16	24	30	1.97
16937135--16937187	26	2.0	26	92	0	88	28	18	24	28	1.98
16938025--16938077	26	2.0	26	92	0	88	26	16	26	30	1.97
16938914--16938966	26	2.0	26	92	0	88	28	18	26	26	1.98
16939797--16939849	26	2.0	26	92	0	88	28	18	24	28	1.98
16940688--16940740	26	2.0	26	92	0	88	26	16	26	30	1.97
16943176--16943228	26	2.0	26	96	0	97	24	20	28	26	1.99
16945836--16945888	26	2.0	26	85	0	70	30	15	24	30	1.95
16946741--16946793	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16947641--16947693	26	2.0	26	85	7	72	28	18	24	28	1.98
16943415--16949865	900	7.2	901	86	3	8500	24	24	24	25	2.00
16948541--16948593	26	2.0	26	92	0	88	26	18	24	30	1.98
16949431--16949483	26	2.0	26	85	7	72	28	18	24	28	1.98
16950288--16950340	26	2.0	26	96	0	97	28	18	26	26	1.98
16952080--16952130	26	2.0	26	84	7	68	29	17	25	27	1.98
16952972--16953024	26	2.0	26	85	7	72	28	18	24	28	1.98
16953861--16953913	26	2.0	26	88	0	79	28	18	22	30	1.98
16954756--16954808	26	2.0	26	96	0	97	28	22	22	26	1.99
16949860--16957329	902	8.3	898	87	3	10030	25	24	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195