genome.fa.s112.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  119  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20599071--20599123	26	2.0	26	92	7	90	26	16	26	30	1.97
20599939--20599991	26	2.0	26	92	0	88	28	15	24	32	1.95
20600837--20600889	26	2.0	26	96	0	97	24	22	26	26	2.00
20602636--20602688	26	2.0	26	88	0	79	30	20	20	28	1.98
20603521--20603573	26	2.0	26	96	0	97	28	20	24	26	1.99
20604414--20604464	26	2.0	26	100	0	102	27	15	29	27	1.96
20599892--20610029	900	11.3	896	85	4	12424	25	24	24	25	2.00
20605311--20605363	26	2.0	26	96	0	97	28	16	24	30	1.97
20607098--20607153	26	2.2	26	93	0	94	26	19	25	28	1.99
20609792--20609870	26	3.0	26	94	0	140	26	18	25	29	1.98
20610003--20610055	26	2.0	26	96	0	97	32	20	20	26	1.98
20609818--20610214	185	2.1	185	89	0	587	22	28	28	20	1.98
20610906--20610961	26	2.2	26	90	0	85	32	19	21	26	1.97
20611799--20611851	26	2.0	26	92	0	88	28	22	24	24	2.00
20614619--20614671	26	2.0	26	88	0	79	30	20	22	26	1.98
20615521--20615572	26	2.0	26	96	0	95	28	17	26	26	1.97
20613874--20616364	902	2.8	898	90	2	3747	25	24	24	25	2.00
20616366--20616418	26	2.0	26	88	0	79	28	18	24	28	1.98
20616364--20621045	903	5.3	895	84	4	5439	25	24	24	25	2.00
20619063--20619114	26	2.0	26	96	0	95	26	17	26	28	1.97
20620725--20620757	11	3.0	11	90	0	57	9	36	33	21	1.85
20620835--20621211	159	2.4	159	84	3	481	22	28	27	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20621860--20621912	26	2.0	26	88	0	79	28	18	24	28	1.98
20623308--20628710	847	6.2	896	85	5	6309	25	23	24	26	2.00
20625448--20625500	26	2.0	26	100	0	106	26	20	26	26	1.99
20629500--20629552	26	2.0	26	92	0	88	26	20	22	30	1.98
20630403--20630455	26	2.0	26	96	0	97	28	20	24	26	1.99
20628730--20633817	877	5.8	874	82	5	5601	25	23	24	26	2.00
20633019--20633070	26	2.0	26	92	0	86	30	21	21	26	1.98
20631360--20633814	893	2.8	894	84	5	2888	25	23	23	26	2.00
20634197--20634246	26	1.9	26	88	8	75	36	22	20	22	1.96
20635091--20635143	26	2.0	26	92	0	88	28	18	24	28	1.98
20633818--20636331	910	2.8	886	83	8	3030	25	24	24	24	2.00
20637295--20637345	26	2.0	26	88	0	75	31	13	25	29	1.94
20638187--20638237	26	2.0	26	88	7	77	31	21	21	25	1.98
20639086--20639138	26	2.0	26	96	0	97	28	20	24	26	1.99
20639980--20640032	26	2.0	26	92	0	88	28	22	22	26	1.99
20636341--20642695	896	7.1	899	86	2	8209	26	23	24	25	2.00
20641771--20641822	26	2.0	26	92	0	86	30	19	25	25	1.98
20642030--20643400	705	1.9	705	89	2	2146	25	22	23	27	2.00
20644285--20644337	26	2.0	26	96	0	97	28	16	24	30	1.97
20642668--20646443	904	4.2	883	85	4	4787	25	24	24	25	2.00
20646607--20646658	26	2.0	26	92	0	86	34	19	23	23	1.96
20648342--20648394	26	2.0	26	89	7	81	28	18	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20649248--20649300	26	2.0	26	96	0	97	28	20	24	26	1.99
20650016--20650067	26	2.0	26	92	0	86	26	23	25	25	2.00
20649886--20657960	899	9.0	895	84	5	9961	25	24	24	25	2.00
20653593--20653642	26	1.9	26	95	0	91	28	14	30	28	1.95
20654499--20654550	26	2.0	26	92	0	86	26	15	26	30	1.96
20655400--20655452	26	2.0	26	96	0	97	26	22	26	24	2.00
20657184--20657236	26	2.0	26	92	0	88	26	16	26	30	1.97
20657398--20658523	561	2.0	564	91	0	1826	26	21	24	27	1.99
20658649--20658701	26	2.0	26	85	7	72	30	18	20	30	1.97
20659556--20659605	26	1.9	26	95	0	91	30	18	22	30	1.97
20660455--20660507	26	2.0	26	85	0	70	26	18	24	30	1.98
20661356--20661408	26	2.0	26	92	0	88	26	16	26	30	1.97
20657960--20662496	906	5.0	904	88	1	6499	25	24	25	25	2.00
20662262--20662314	26	2.0	26	92	0	88	26	20	28	24	1.99
20662288--20662650	159	2.3	159	83	1	424	22	29	27	19	1.98
20663323--20663375	26	2.0	26	92	0	88	28	15	24	32	1.95
20662461--20666050	895	4.0	894	87	3	4835	24	24	25	25	2.00
20666677--20666732	26	2.2	26	90	0	85	28	16	23	32	1.96
20675542--20675592	26	2.0	26	84	0	66	35	11	27	25	1.91
20676444--20676496	26	2.0	26	100	0	106	26	20	26	26	1.99
20674824--20679887	904	5.7	897	83	5	5806	25	23	24	26	2.00
20681162--20681214	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20679888--20682429	893	2.8	884	83	5	3216	26	24	24	24	2.00
20682058--20682110	26	2.0	26	89	7	81	26	15	26	32	1.95
20683391--20683441	26	2.0	26	92	0	84	31	11	25	31	1.92
20685183--20685235	26	2.0	26	100	0	106	26	20	26	26	1.99
20682439--20690047	887	8.5	898	85	4	9359	25	24	24	25	2.00
20686955--20687007	26	2.0	26	88	0	79	28	16	24	30	1.97
20686080--20690047	896	4.4	900	84	3	4991	25	24	24	25	2.00
20687376--20687444	10	6.8	10	87	9	104	20	17	1	60	1.43
20687376--20687444	31	2.3	30	90	7	104	20	17	1	60	1.43
20687868--20687920	26	2.0	26	96	0	97	28	16	24	30	1.97
20690211--20690262	26	2.0	26	96	0	95	36	19	21	23	1.95
20691941--20691993	26	2.0	26	89	7	81	28	18	22	30	1.98
20692846--20692898	26	2.0	26	96	0	97	28	20	24	26	1.99
20693693--20693745	26	2.0	26	92	0	88	26	16	26	30	1.97
20691080--20692916	904	2.0	899	85	3	2274	26	23	24	25	2.00
20691080--20697183	897	6.9	896	82	7	7004	25	24	25	25	2.00
20695459--20695509	25	2.0	25	88	7	77	29	19	23	27	1.98
20696349--20696401	26	2.0	26	92	0	88	26	16	26	30	1.97
20699885--20699936	26	2.0	26	92	0	86	26	23	25	25	2.00
20701668--20701720	26	2.0	26	88	0	79	28	16	24	30	1.97
20704326--20704377	26	2.0	26	92	0	86	26	15	26	30	1.96
20705226--20705278	26	2.0	26	96	0	97	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20706109--20706158	26	1.9	26	95	0	91	30	20	24	26	1.98
20709000--20709049	26	1.9	26	95	0	91	30	18	22	30	1.97
20710804--20710856	26	2.0	26	96	0	97	26	15	26	32	1.95
20708411--20711937	898	3.9	893	86	3	4880	24	24	25	25	2.00
20711702--20711754	26	2.0	26	92	0	88	26	20	28	24	1.99
20711728--20712090	159	2.3	159	86	0	476	21	30	29	19	1.97
20712762--20712814	26	2.0	26	92	0	88	28	15	24	32	1.95
20711901--20715506	895	4.0	894	85	4	4387	24	24	25	25	2.00
20716130--20716185	26	2.2	26	90	0	85	28	16	23	32	1.96
20723403--20723472	26	2.7	26	93	0	113	28	18	24	28	1.98
20724318--20724370	26	2.0	26	92	0	88	26	18	24	30	1.98
20725214--20725266	26	2.0	26	92	0	88	26	20	24	28	1.99
20726098--20726150	26	2.0	26	88	0	79	28	20	22	28	1.99
20727864--20727917	26	2.1	26	92	0	90	27	18	25	27	1.98
20728764--20728816	26	2.0	26	92	0	88	28	18	24	28	1.98
20721725--20731476	892	10.9	895	83	6	11461	25	24	24	25	2.00
20731409--20731461	26	2.0	26	96	0	97	26	18	26	28	1.98
20732984--20733036	26	2.0	26	88	0	79	30	15	24	30	1.95
20731435--20736890	869	6.2	864	84	6	6114	25	23	24	25	2.00
20736633--20736663	12	2.6	12	94	0	53	6	38	25	29	1.81
20738069--20738120	26	2.0	25	92	3	86	28	19	26	25	1.98
20737203--20739035	900	2.0	892	86	3	2509	25	23	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20740541--20740593	26	2.0	26	92	0	88	26	22	24	26	2.00
20741416--20741468	26	2.0	26	96	0	97	26	18	26	28	1.98
20739118--20744660	892	6.4	859	84	6	6601	25	23	24	26	2.00
20743157--20743206	26	1.9	26	87	0	73	32	16	26	26	1.96
20745335--20745413	26	3.0	26	96	0	149	26	17	26	29	1.98
20747314--20747363	26	2.0	26	96	4	93	30	20	22	28	1.98
20748193--20748245	26	2.0	26	96	0	97	24	20	28	26	1.99
20749839--20749891	26	2.0	26	100	0	106	26	16	26	30	1.97
20750709--20750760	25	2.0	26	92	3	88	26	19	25	28	1.98
20749730--20755792	869	6.9	872	80	9	5632	25	23	24	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195