genome.fa.s112.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  155  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25901940--25902169	101	2.4	98	80	6	236	29	15	21	33	1.94
25901782--25902075	158	1.9	158	82	5	351	30	16	20	33	1.94
25901986--25902202	99	2.2	101	83	3	269	29	14	21	34	1.93
25902036--25902201	33	5.0	33	70	10	106	27	13	22	36	1.92
25902404--25902474	22	3.2	22	80	4	81	29	21	18	30	1.97
25902413--25902483	22	3.2	22	81	0	88	28	21	19	30	1.97
25902414--25902498	44	1.9	44	82	0	107	29	24	17	28	1.97
25903572--25903632	26	2.4	26	84	13	74	4	21	0	73	1.01
25904059--25904088	13	2.4	13	94	5	53	0	16	0	83	0.65
25904072--25904119	21	2.3	22	82	10	64	4	10	6	79	1.05
25904941--25904983	10	4.2	10	77	16	52	0	11	2	86	0.67
25908139--25908206	29	2.4	29	82	2	84	30	13	5	50	1.65
25910564--25910612	24	2.1	23	85	7	64	51	2	4	42	1.32
25914791--25914862	24	3.0	24	72	11	67	72	2	4	20	1.15
25924617--25924673	2	28.5	2	96	0	69	40	0	8	50	1.33
25926185--25926240	6	8.8	6	90	5	67	19	0	0	80	0.71
25926195--25926237	3	14.7	3	80	4	52	23	0	0	76	0.78
25927996--25928026	2	15.5	2	100	0	62	48	0	0	51	1.00
25928350--25928379	3	10.0	3	100	0	60	33	0	0	66	0.92
25930516--25930556	19	2.2	19	83	12	50	14	4	4	75	1.14
25933134--25933281	61	2.4	62	80	4	151	41	10	6	42	1.63
25933187--25933235	18	2.8	18	84	3	55	38	8	8	44	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25933237--25933277	17	2.4	17	88	8	57	43	7	4	43	1.53
25933094--25933260	79	2.1	79	78	12	182	40	13	5	40	1.68
25933274--25933355	17	4.7	19	73	14	61	32	12	17	37	1.86
25933327--25933423	18	5.4	18	73	7	54	46	11	6	36	1.65
25933388--25933470	26	3.2	25	86	5	76	43	10	4	40	1.61
25933419--25933532	31	3.8	31	78	5	112	35	13	8	42	1.75
25933831--25934150	44	7.4	45	70	14	156	43	14	7	34	1.73
25933863--25934066	64	3.2	63	87	5	293	43	14	6	35	1.72
25933761--25934003	110	2.2	110	89	0	369	42	14	6	36	1.72
25933808--25934023	20	10.1	20	66	16	78	43	14	6	35	1.72
25934001--25934118	42	2.7	42	80	7	121	45	13	8	32	1.74
25934001--25934118	43	2.7	43	80	7	123	45	13	8	32	1.74
25936833--25936888	20	2.8	20	76	7	62	51	10	1	35	1.47
25941811--25941843	8	4.1	8	96	0	57	27	12	9	51	1.69
25942511--25942775	145	1.8	145	95	0	476	45	8	9	37	1.66
25944999--25945056	20	2.8	21	75	15	57	46	5	6	41	1.53
25945164--25945264	44	2.3	44	83	5	125	43	1	10	43	1.50
25945150--25945261	22	5.1	22	78	2	100	45	3	11	39	1.58
25945319--25945370	22	2.4	21	78	9	59	48	13	9	28	1.74
25945355--25945581	22	10.6	21	67	15	72	51	4	7	36	1.50
25945359--25945453	44	2.2	43	84	5	120	46	5	8	40	1.57
25945487--25945583	41	2.3	41	81	8	106	54	3	6	36	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25945504--25945590	22	4.1	22	73	8	81	51	4	8	35	1.52
25945607--25945644	19	2.0	19	89	0	58	50	2	7	39	1.46
25945484--25945711	85	2.7	85	76	8	216	50	5	7	36	1.54
25945628--25945689	22	2.8	22	77	0	70	53	8	1	37	1.40
25945733--25945850	22	5.4	22	73	9	71	44	14	8	32	1.75
25945790--25945858	22	3.2	22	76	12	70	44	18	7	28	1.76
25945927--25945998	33	2.2	33	100	0	144	34	2	5	56	1.37
25946299--25946411	21	5.4	21	75	13	83	46	10	7	35	1.68
25947335--25947362	2	14.0	2	100	0	56	50	0	0	50	1.00
25947711--25947832	3	43.3	3	66	15	55	36	4	3	55	1.35
25947732--25947828	5	19.2	5	74	16	67	37	4	3	55	1.35
25947710--25947825	18	6.5	19	70	24	74	37	4	4	54	1.40
25948866--25948903	16	2.3	17	86	13	53	55	10	0	34	1.34
25949604--25949687	45	1.9	43	88	9	125	17	11	7	63	1.50
25960102--25960398	114	2.6	114	80	5	323	23	27	15	34	1.94
25960200--25960538	174	1.9	174	81	5	400	24	26	15	33	1.95
25960370--25960851	113	4.2	115	75	5	388	23	27	15	33	1.95
25961116--25961170	3	18.3	3	96	0	101	32	1	0	65	1.03
25967657--25967712	26	2.2	26	96	0	103	33	14	12	39	1.83
25969424--25969475	26	2.0	26	85	11	70	61	3	5	28	1.37
25969636--25969734	36	2.8	35	83	4	128	9	20	8	62	1.50
25969931--25969989	28	2.1	28	81	6	66	15	3	18	62	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25970216--25970896	332	2.1	328	81	5	798	35	7	15	41	1.76
25974833--25975174	176	1.9	177	86	1	490	35	13	14	36	1.86
25980337--25980368	10	3.2	10	95	0	55	62	18	6	12	1.50
25983919--25983958	21	2.0	20	85	5	53	30	0	20	50	1.49
25985809--25985854	10	4.5	10	81	5	56	39	0	26	34	1.57
25986946--25987050	53	2.0	53	83	7	133	31	9	29	29	1.89
25987824--25987931	53	2.0	53	91	3	173	28	8	34	28	1.86
25989264--25989290	3	9.0	3	100	0	54	66	0	0	33	0.92
25992351--25992382	13	2.3	15	89	10	50	0	0	18	81	0.70
25993567--25993614	17	2.7	18	83	6	71	54	6	10	29	1.59
25994804--25994858	25	2.2	25	80	9	58	38	7	7	47	1.59
25996003--25996161	41	3.9	41	81	5	178	47	20	10	22	1.80
25995926--25996163	82	2.9	81	77	9	230	45	18	12	23	1.83
25996111--25996219	56	2.0	55	92	1	182	49	20	12	17	1.79
25996163--25996333	43	4.0	43	89	2	220	47	18	13	20	1.82
25996505--25996562	23	2.5	23	80	8	64	39	15	15	29	1.88
25996911--25996962	20	2.6	20	100	0	104	30	15	17	36	1.91
25997169--25997320	63	2.4	63	84	1	178	30	24	8	36	1.85
25998041--25998153	15	7.3	15	75	16	88	9	7	0	82	0.89
25998039--25998153	18	6.5	18	72	17	73	9	6	0	82	0.88
25998041--25998147	9	11.6	9	78	13	65	10	7	0	82	0.85
25998039--25998113	1	75.0	1	71	0	51	12	2	0	85	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26000552--26000613	18	3.4	18	100	0	124	22	14	24	38	1.91
26002125--26002247	63	2.0	63	90	1	194	20	12	7	60	1.55
26002686--26002719	17	2.1	17	94	5	61	79	0	2	17	0.86
26003007--26003038	15	2.1	16	94	5	57	3	25	0	71	1.00
26003494--26003532	8	4.9	8	84	12	53	15	2	0	82	0.79
26007864--26008217	63	5.6	63	74	9	294	39	12	10	37	1.76
26007854--26008227	125	3.0	125	81	6	429	39	11	9	38	1.75
26011075--26011105	16	1.9	16	93	0	53	12	0	9	77	0.99
26011610--26011644	8	4.6	8	86	13	56	14	0	17	68	1.21
26011618--26011644	14	1.9	14	100	0	54	14	0	14	70	1.17
26014254--26014290	3	12.3	3	100	0	74	35	0	0	64	0.94
26016520--26016579	29	2.1	29	93	0	102	41	10	3	45	1.54
26018282--26018319	18	2.1	18	90	9	60	47	5	0	47	1.24
26023055--26023088	15	2.3	15	89	0	50	67	8	2	20	1.31
26024426--26024507	22	3.7	22	77	3	85	32	28	18	20	1.96
26024393--26024515	44	2.8	44	80	4	140	30	25	17	26	1.98
26024706--26024866	34	4.9	33	74	10	141	36	18	11	34	1.86
26024731--26024808	31	2.5	31	82	2	93	35	17	11	34	1.86
26024757--26024903	66	2.2	69	81	7	169	38	17	10	34	1.84
26025070--26025097	14	2.0	14	100	0	56	21	21	14	42	1.88
26025055--26025148	41	2.3	41	83	3	118	44	18	9	27	1.80
26025150--26025329	100	1.8	100	81	2	227	31	18	13	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26025655--26025702	13	3.8	13	81	8	55	27	20	14	37	1.92
26025769--26025811	13	3.3	13	81	18	54	83	0	16	0	0.64
26025770--26025811	11	3.5	12	87	6	59	83	0	16	0	0.65
26026195--26026236	22	1.9	22	85	9	59	28	26	14	30	1.95
26026166--26026503	126	2.7	123	81	5	365	34	14	15	36	1.88
26026920--26026948	3	9.7	3	100	0	58	34	0	0	65	0.93
26032214--26032249	18	2.1	18	89	5	56	36	2	8	52	1.46
26033423--26033498	29	2.7	27	83	8	89	56	1	6	35	1.34
26033449--26033508	28	2.2	27	82	8	68	63	3	3	30	1.27
26033599--26033624	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195