genome.fa.s112.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  87  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16317159--16317211	26	2.0	26	92	0	88	32	24	15	28	1.95
16319084--16319136	26	2.0	26	82	7	63	32	20	20	26	1.98
16321771--16321823	26	2.0	26	92	0	88	28	26	18	26	1.98
16324375--16324427	26	2.0	26	100	0	106	26	26	20	26	1.99
16327938--16327990	26	2.0	26	96	0	97	26	24	22	26	2.00
16328812--16328862	26	2.0	26	96	0	93	27	27	15	29	1.96
16331459--16331511	26	2.0	26	96	0	97	28	26	18	26	1.98
16323721--16337675	873	15.8	873	84	6	15330	25	24	24	25	2.00
16339014--16339066	26	2.0	26	88	0	79	28	16	24	30	1.97
16347340--16347391	26	2.0	25	92	3	86	26	19	26	26	1.99
16345757--16352843	899	8.0	889	84	6	8253	25	24	23	26	2.00
16350890--16350942	26	2.0	26	82	7	63	26	20	20	32	1.98
16352817--16352869	26	2.0	26	92	0	88	28	15	24	32	1.95
16353066--16354534	709	2.1	708	88	2	2193	25	23	24	26	2.00
16354433--16354640	108	1.9	108	90	0	326	25	25	33	16	1.96
16354541--16356333	874	2.0	876	89	2	2751	24	23	25	25	2.00
16358230--16358282	26	2.0	26	92	0	88	28	18	24	28	1.98
16357580--16359997	888	2.7	891	88	2	3571	26	23	23	26	2.00
16361514--16361565	26	2.0	26	92	0	86	28	17	25	28	1.97
16361663--16362835	594	2.0	594	90	1	1859	25	21	22	29	1.99
16362906--16362958	26	2.0	26	92	0	88	28	18	24	28	1.98
16367075--16367128	26	2.1	26	96	0	99	25	25	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16368717--16368769	26	2.0	26	96	0	97	28	26	18	26	1.98
16371361--16371411	26	2.0	26	96	0	93	23	25	19	31	1.98
16372234--16372284	26	2.0	26	92	0	84	27	25	15	31	1.96
16368934--16374920	874	6.7	880	84	5	6477	25	24	23	25	2.00
16375509--16375572	24	2.5	27	80	14	82	26	23	23	26	2.00
16375509--16375579	26	2.8	25	85	10	92	25	25	22	26	2.00
16376409--16376461	26	2.0	26	88	0	79	28	20	22	28	1.99
16379812--16379864	26	2.0	26	96	0	97	26	24	20	28	1.99
16377981--16381127	899	3.5	899	89	2	4491	25	24	24	25	2.00
16380289--16380345	26	2.2	26	83	0	69	59	8	8	22	1.55
16382263--16382313	26	2.0	26	96	0	93	29	21	17	31	1.96
16384069--16384119	26	2.0	26	96	0	93	25	25	19	29	1.99
16381125--16390703	903	10.8	898	85	4	11447	25	24	24	25	2.00
16385643--16385667	12	2.1	12	100	0	50	0	56	28	16	1.41
16385845--16385897	26	2.0	26	96	0	97	28	26	18	26	1.98
16388499--16388551	26	2.0	26	92	0	88	26	22	22	28	1.99
16391840--16391890	26	2.0	26	96	0	93	29	21	17	31	1.96
16393643--16393693	26	2.0	26	96	0	93	25	25	19	29	1.99
16390705--16401358	902	11.9	902	85	4	13497	25	24	24	25	2.00
16395217--16395241	12	2.1	12	100	0	50	0	56	28	16	1.41
16395400--16395452	26	2.0	26	100	0	106	26	26	20	26	1.99
16391864--16401368	905	10.7	867	84	5	10878	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16398049--16398101	26	2.0	26	92	0	88	26	22	22	28	1.99
16398948--16399000	26	2.0	26	96	0	97	26	24	20	28	1.99
16399852--16399904	26	2.0	26	96	0	97	28	26	18	26	1.98
16400745--16400797	26	2.0	26	92	0	88	30	26	16	26	1.97
16401373--16403734	867	2.7	869	85	5	3023	25	24	24	25	2.00
16403277--16403329	26	2.0	26	96	0	97	28	22	20	28	1.99
16405712--16405764	26	2.0	26	100	0	106	26	26	20	26	1.99
16405556--16405977	185	2.3	185	89	0	639	20	28	28	22	1.98
16405898--16405947	26	1.9	26	100	0	100	26	28	18	28	1.98
16406696--16406748	26	2.0	26	96	0	97	24	26	20	28	1.99
16408042--16408098	26	2.2	26	83	0	69	59	10	8	21	1.57
16408470--16408520	26	2.0	26	96	0	93	31	27	13	27	1.94
16409332--16409382	26	2.0	26	92	0	84	31	29	11	27	1.92
16406401--16411962	893	6.3	881	84	5	6863	25	25	23	25	2.00
16410224--16410275	26	2.0	26	100	0	104	26	26	19	26	1.99
16406401--16411962	892	6.3	890	84	5	6887	25	25	23	25	2.00
16411117--16411167	26	2.0	26	92	0	84	31	29	11	27	1.92
16412311--16412360	26	1.9	26	95	0	91	24	24	22	30	1.99
16413202--16413254	26	2.0	26	88	0	79	30	24	16	28	1.97
16411989--16430496	895	20.4	892	73	11	11413	25	24	24	25	2.00
16414992--16415070	26	3.0	26	96	0	140	29	25	17	27	1.98
16415918--16415969	25	2.0	26	88	3	79	28	25	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16418909--16418961	26	2.0	26	96	0	97	26	24	20	28	1.99
16419802--16419854	26	2.0	26	96	0	97	28	24	20	26	1.99
16418210--16420041	893	2.1	886	88	3	2687	25	24	24	25	2.00
16421420--16421472	26	2.0	26	100	0	106	26	26	20	26	1.99
16420039--16430496	884	11.6	883	75	10	8282	25	24	24	25	2.00
16424076--16424127	26	2.0	26	96	0	95	26	21	19	32	1.97
16424965--16425017	26	2.0	26	100	0	106	26	26	20	26	1.99
16425671--16426018	158	2.2	159	82	2	396	20	26	29	22	1.99
16425824--16430496	881	5.2	877	82	6	5380	25	24	24	25	2.00
16430664--16430719	26	2.2	26	90	0	85	28	25	17	28	1.98
16432182--16433988	871	2.1	874	87	1	2557	25	23	24	25	2.00
16433743--16434118	159	2.4	159	87	1	531	18	30	29	22	1.97
16435686--16435738	26	2.0	26	96	0	97	26	24	20	28	1.99
16437456--16437511	26	2.2	26	100	0	112	28	25	19	26	1.99
16438346--16440522	890	2.4	886	86	4	2947	25	24	24	26	2.00
16440751--16441163	185	2.2	185	86	0	585	23	29	27	20	1.99
16441091--16441143	26	2.0	26	88	0	79	26	20	22	30	1.98
16441966--16445529	903	4.0	900	84	4	4582	26	24	24	25	2.00
16444818--16444870	26	2.0	26	92	0	88	24	26	20	28	1.99
16446481--16446530	26	1.9	26	95	0	91	26	26	18	30	1.98
16447381--16447433	26	2.0	26	96	0	97	24	26	20	28	1.99
16446372--16448957	902	2.9	904	89	2	4019	24	25	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16448316--16449601	645	2.0	647	89	1	1952	28	22	22	26	1.99
16449838--16449888	26	2.0	26	100	0	102	31	23	15	29	1.95
16450692--16450744	26	2.0	26	92	0	88	24	24	20	30	1.99
16451594--16451646	26	2.0	26	96	0	97	28	26	18	26	1.98
16452680--16452732	26	2.0	26	96	0	97	28	22	18	30	1.98
16453555--16453607	26	2.0	26	92	0	88	26	22	20	30	1.98
16455088--16455127	20	2.0	20	100	0	80	30	55	5	10	1.54
16455375--16455427	26	2.0	26	92	0	88	30	22	18	28	1.98
16456245--16456297	26	2.0	26	100	0	106	30	26	16	26	1.97
16457163--16457213	26	2.0	26	96	0	93	27	21	21	29	1.99
16458062--16458114	26	2.0	26	96	0	97	28	26	18	26	1.98
16459837--16459889	26	2.0	26	96	0	97	28	26	18	26	1.98
16461625--16461677	26	2.0	26	92	0	88	28	24	18	28	1.98
16464311--16464363	26	2.0	26	96	0	97	26	24	20	28	1.99
16465214--16465266	26	2.0	26	92	0	88	26	22	20	30	1.98
16456075--16466647	903	11.8	901	86	3	13364	25	24	24	25	2.00
16466117--16466166	26	1.9	26	87	0	73	30	24	18	28	1.97
16467603--16467655	26	2.0	26	100	0	106	26	26	20	26	1.99
16468449--16468501	26	2.1	25	92	3	88	26	24	20	28	1.99
16469586--16469617	12	2.7	12	95	0	55	12	34	18	34	1.89
16470262--16470315	26	2.1	26	96	0	99	25	25	20	27	1.99
16468255--16482605	902	16.1	900	83	5	15359	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16471978--16472030	26	2.1	25	92	3	88	26	24	20	28	1.99
16473777--16473830	26	2.1	26	96	0	99	25	25	20	27	1.99
16475532--16475590	26	2.3	26	94	5	104	27	27	20	25	1.99
16478230--16478282	26	2.0	26	88	0	79	32	22	18	26	1.97
16479144--16479202	26	2.3	26	94	5	104	27	27	20	25	1.99
16474679--16496110	902	23.8	902	74	11	12270	26	24	23	26	2.00
16482580--16482631	26	2.0	26	96	0	95	26	23	21	28	1.99
16483178--16483255	27	2.9	27	83	9	81	23	1	3	71	1.09
16483194--16483267	27	2.8	27	78	10	73	22	2	4	70	1.17
16483816--16483849	11	3.1	11	95	0	59	14	17	29	38	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195