genome.fa.s112.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  158  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26354193--26354471	140	2.0	141	97	0	524	32	16	12	39	1.85
26354939--26354969	16	2.0	16	93	6	55	29	0	0	70	0.87
26355150--26355211	17	3.4	17	72	23	63	6	25	45	22	1.76
26355148--26355224	38	2.1	37	90	2	118	7	24	45	22	1.78
26355733--26355806	37	2.0	37	97	0	139	14	8	22	54	1.67
26355833--26355857	10	2.5	10	100	0	50	8	0	28	64	1.22
26356200--26356254	22	2.5	22	82	2	67	1	3	10	83	0.84
26357398--26357426	14	2.1	14	100	0	58	6	48	17	27	1.72
26363867--26363932	1	66.0	1	73	0	51	86	7	3	3	0.77
26363867--26363932	12	5.3	12	77	15	64	86	7	3	3	0.77
26365687--26365735	22	2.2	22	85	0	62	26	22	18	32	1.97
26365794--26365833	21	1.9	21	94	0	71	30	22	20	27	1.98
26365795--26365872	23	3.5	22	84	5	88	28	21	20	29	1.98
26365867--26366150	87	3.3	86	80	2	307	20	17	19	42	1.89
26366151--26366334	87	2.1	87	89	0	278	21	17	17	42	1.89
26365955--26366355	196	2.0	196	87	0	579	21	18	18	41	1.90
26366321--26366478	45	3.6	44	81	6	176	24	22	21	31	1.98
26366325--26366469	66	2.2	66	88	6	213	24	23	22	29	1.99
26366325--26366478	22	7.0	22	82	5	168	25	22	21	30	1.99
26366525--26366563	18	2.2	18	90	9	62	20	20	12	46	1.83
26366430--26366672	127	1.9	127	88	0	369	21	20	18	39	1.92
26366672--26366758	22	4.0	21	79	11	95	29	22	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26366555--26366832	152	1.8	152	86	1	405	23	21	17	37	1.94
26366737--26366919	87	2.1	87	84	5	235	19	20	19	40	1.91
26366824--26367247	218	1.9	219	82	2	530	22	20	17	39	1.92
26366824--26367254	109	3.9	109	84	1	479	22	20	17	39	1.92
26367455--26367512	22	2.8	20	81	5	62	56	0	0	43	0.99
26367507--26367563	28	2.1	27	90	6	89	84	3	3	8	0.86
26367530--26367565	17	2.1	17	89	5	54	86	5	2	5	0.79
26369052--26369122	33	2.2	33	89	0	106	49	29	0	21	1.50
26369072--26369122	17	3.1	17	74	5	59	47	35	0	17	1.48
26369062--26369113	16	3.2	16	75	5	59	48	30	0	21	1.51
26369072--26369163	40	2.3	40	80	14	109	46	36	0	16	1.47
26369093--26369163	24	2.9	24	79	6	72	45	38	0	16	1.48
26371084--26371383	153	2.0	153	95	0	546	31	16	17	35	1.92
26372128--26372720	304	2.0	304	92	1	1001	27	19	16	36	1.93
26374894--26374934	20	2.0	20	90	0	64	12	2	12	73	1.20
26374913--26374957	23	1.9	24	86	4	65	13	2	11	73	1.19
26374929--26374972	18	2.6	18	83	16	51	18	0	6	75	1.02
26374973--26375036	7	8.4	7	78	21	67	73	14	0	12	1.10
26374979--26375022	10	4.1	10	78	16	52	75	13	0	11	1.06
26374973--26375037	17	4.1	17	69	15	66	73	13	0	12	1.09
26374973--26375037	23	2.8	24	92	2	114	73	13	0	12	1.09
26375316--26375359	23	2.0	23	86	4	63	72	6	6	13	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26375984--26376034	12	4.5	11	83	7	59	25	0	1	72	0.95
26375985--26376028	24	1.9	24	86	9	65	25	0	2	72	0.96
26378174--26378355	96	1.9	97	90	1	294	39	10	17	32	1.84
26391193--26391221	14	2.0	15	93	6	51	62	3	6	27	1.37
26391547--26391590	17	2.6	17	89	7	63	50	20	13	15	1.78
26396044--26396090	19	2.5	19	76	13	51	51	0	0	48	1.00
26396131--26396183	19	2.8	18	72	11	52	39	1	1	56	1.21
26398982--26399015	17	2.0	17	88	0	50	50	8	5	35	1.58
26401653--26401684	17	1.9	17	93	6	57	37	9	6	46	1.61
26406190--26406231	15	2.8	15	92	0	66	26	0	4	69	1.08
26406542--26407016	124	3.9	119	76	11	399	36	8	6	48	1.59
26407049--26407102	20	2.8	19	76	21	51	22	1	5	70	1.18
26407687--26407711	3	8.3	3	100	0	50	68	0	0	32	0.90
26408091--26408132	2	21.0	2	85	0	57	42	0	4	52	1.22
26408645--26408676	2	15.5	2	93	6	55	46	0	3	50	1.17
26411269--26411312	20	2.2	20	88	8	63	6	11	20	61	1.52
26418800--26418843	23	1.9	23	85	0	61	43	2	0	54	1.12
26420573--26420611	3	13.0	3	100	0	78	66	0	33	0	0.92
26420571--26420615	9	4.7	10	91	8	60	64	0	35	0	0.94
26421897--26422021	58	2.1	58	94	1	214	20	17	20	42	1.89
26424159--26424203	19	2.4	19	88	0	72	26	13	4	55	1.57
26424348--26424412	26	2.5	26	100	0	130	26	29	3	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26426508--26426690	92	2.0	92	97	0	348	44	5	9	40	1.59
26426904--26426949	13	3.7	13	80	11	60	58	0	0	41	0.98
26427978--26428007	4	7.5	4	100	0	60	0	23	0	76	0.78
26428345--26428395	25	2.0	25	88	3	75	17	11	3	66	1.38
26430928--26430964	16	2.2	17	95	4	67	29	18	13	37	1.90
26434919--26434998	36	2.3	34	83	12	92	37	3	3	55	1.36
26434966--26435011	14	3.1	14	82	11	56	45	0	0	54	0.99
26434966--26435011	15	3.1	15	87	9	60	45	0	0	54	0.99
26435531--26435572	4	10.2	4	84	5	57	73	0	0	26	0.83
26436098--26436131	12	2.8	12	81	0	50	55	0	0	44	0.99
26440169--26440227	15	4.0	14	78	14	57	44	0	0	55	0.99
26440168--26440201	17	1.9	17	88	5	50	44	0	0	55	0.99
26440184--26440234	13	3.7	14	73	21	54	45	0	0	54	0.99
26440187--26440234	15	3.6	12	77	22	51	45	0	0	54	0.99
26440222--26440264	17	2.5	17	82	10	52	30	4	2	62	1.28
26447175--26447204	11	2.6	11	94	5	51	60	0	0	40	0.97
26462253--26462290	20	1.9	20	84	10	51	15	10	5	68	1.36
26472600--26472709	29	3.4	29	67	23	85	61	2	9	26	1.39
26472575--26472715	69	2.0	69	100	0	282	59	4	12	24	1.50
26472592--26472747	69	2.2	69	87	4	215	64	5	7	22	1.39
26477090--26477271	5	35.0	5	66	21	56	67	2	9	21	1.30
26477097--26477240	24	6.5	22	71	20	97	66	2	9	20	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26477090--26477176	9	9.0	9	72	13	57	67	1	9	21	1.25
26477092--26477198	38	2.9	37	82	6	112	67	2	9	20	1.32
26477188--26477240	22	2.4	22	81	15	56	64	3	9	22	1.40
26480057--26480110	13	4.5	11	80	15	54	74	5	3	16	1.16
26480065--26480110	13	3.8	12	83	13	58	76	6	2	15	1.09
26480083--26480132	19	2.6	19	87	0	64	76	10	4	10	1.15
26481381--26481469	46	1.9	46	86	4	126	48	11	14	25	1.77
26481398--26481598	43	4.7	43	78	6	167	44	11	15	28	1.81
26482500--26482546	21	2.3	21	92	3	78	27	0	0	72	0.85
26484103--26484133	12	2.7	12	95	5	55	70	0	0	29	0.87
26485791--26485820	13	2.2	14	94	5	53	0	6	6	86	0.70
26490929--26490968	20	2.0	20	100	0	80	40	10	25	25	1.86
26493826--26493867	19	2.2	20	86	4	59	2	28	0	69	1.01
26493897--26493937	12	3.4	12	90	6	57	2	14	0	82	0.76
26495051--26495093	17	2.5	17	88	3	59	79	9	0	11	0.95
26504668--26504764	48	2.0	47	98	2	185	41	13	10	35	1.78
26505377--26505578	54	3.7	54	78	3	183	34	13	27	23	1.93
26510042--26510294	85	3.0	85	97	0	461	40	13	6	39	1.71
26519393--26519431	13	3.0	13	80	0	51	41	0	0	58	0.98
26519426--26519469	19	2.4	20	75	17	51	31	0	4	63	1.14
26519967--26520007	19	2.1	20	86	4	57	43	14	4	36	1.67
26520507--26520619	32	3.4	33	77	14	99	68	1	6	23	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26520543--26520608	23	2.8	22	82	13	69	68	3	4	24	1.23
26520543--26520598	12	4.8	12	77	18	55	67	3	3	25	1.22
26520856--26521052	33	6.0	33	74	2	130	40	10	19	29	1.85
26521302--26521408	31	3.4	30	71	13	81	48	9	19	22	1.77
26521366--26521517	33	4.8	32	75	9	123	48	13	16	21	1.80
26521230--26521522	64	4.6	65	78	8	228	46	10	19	22	1.80
26521359--26521522	64	2.5	64	86	2	231	48	12	17	21	1.80
26522579--26522635	28	2.0	29	86	13	82	7	19	0	73	1.05
26522593--26522656	21	3.2	20	82	6	67	7	14	0	78	0.96
26524318--26524447	16	6.9	20	71	22	81	49	10	3	36	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195