genome.fa.s112.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  46  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9582099--9582162	31	2.1	31	93	0	110	23	4	18	53	1.64
9582062--9582200	74	1.9	75	87	4	210	23	8	17	49	1.74
9582355--9582454	36	2.7	34	81	15	119	27	4	13	56	1.55
9582355--9582454	38	2.7	36	81	15	123	27	4	13	56	1.55
9582069--9582614	247	2.2	245	80	6	586	25	9	15	49	1.75
9582602--9582700	46	2.1	49	81	5	114	22	9	16	52	1.71
9582454--9582790	134	2.6	134	82	8	372	23	11	17	47	1.80
9583572--9583671	44	2.3	44	89	3	148	57	5	12	26	1.55
9587615--9587666	25	2.1	25	96	0	95	25	25	3	46	1.70
9592386--9592415	15	2.0	15	93	0	51	76	0	10	13	1.01
9605097--9605151	3	20.0	3	75	17	57	30	0	1	67	1.01
9605101--9605152	18	2.7	19	82	8	70	30	0	3	65	1.10
9605106--9605151	13	3.5	13	85	11	58	32	0	2	65	1.05
9605134--9605193	13	4.4	13	76	17	50	41	3	6	48	1.46
9605194--9605225	12	2.7	12	95	0	55	6	0	25	68	1.12
9606031--9606078	5	8.8	5	88	11	60	16	2	2	79	0.93
9606264--9606325	27	2.3	26	76	17	65	54	8	3	33	1.46
9609959--9609990	12	2.6	13	90	9	50	90	0	9	0	0.45
9609914--9610073	60	2.5	64	80	10	161	60	10	16	12	1.58
9609922--9610073	67	2.4	66	76	15	158	60	11	15	12	1.59
9610320--9610382	10	5.7	10	77	17	54	85	7	4	1	0.78
9610322--9610382	15	3.9	16	72	12	56	85	8	4	1	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9611256--9611511	86	3.0	86	80	2	282	29	18	12	39	1.87
9612048--9612083	13	2.8	13	91	0	54	36	2	0	61	1.11
9612064--9612120	13	4.2	13	78	14	53	42	0	8	49	1.34
9612942--9612989	22	2.2	22	88	7	71	14	4	0	81	0.84
9612943--9612995	11	4.8	11	77	13	56	15	3	0	81	0.83
9612954--9613019	26	2.5	26	80	9	80	19	6	0	74	1.03
9613125--9613155	2	15.5	2	100	0	62	51	0	0	48	1.00
9613200--9613259	26	2.3	26	78	16	70	55	6	1	36	1.36
9614020--9614059	21	1.9	21	89	0	62	15	20	0	65	1.28
9614032--9614086	24	2.3	24	84	6	67	14	23	1	60	1.44
9617652--9617686	3	11.7	3	100	0	70	31	0	0	68	0.90
9617727--9617761	3	11.7	3	100	0	70	68	0	0	31	0.90
9618309--9618339	16	2.0	16	93	6	55	67	0	6	25	1.14
9619446--9619502	3	19.0	3	96	0	105	64	0	1	33	1.04
9621651--9621680	15	2.0	15	93	0	51	63	0	16	20	1.31
9631013--9631185	34	5.0	34	76	2	148	13	19	16	50	1.77
9631013--9631232	102	2.1	103	79	3	237	12	19	16	51	1.75
9631197--9631265	35	2.0	35	85	5	95	11	20	15	52	1.74
9631013--9631437	34	12.4	35	69	7	129	15	20	13	50	1.77
9631424--9631514	35	2.6	34	79	5	92	18	18	9	52	1.72
9632818--9633156	60	5.8	56	76	12	265	36	11	5	46	1.62
9632860--9633154	116	2.5	117	81	4	342	37	11	5	45	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9635011--9635048	20	1.9	20	84	10	51	76	2	5	15	1.08
9635035--9635075	19	2.2	19	87	12	59	75	4	7	12	1.16
9635554--9635698	52	2.8	50	80	4	155	37	17	7	37	1.78
9635927--9636502	116	5.0	116	77	9	464	44	13	21	20	1.85
9635927--9636475	234	2.4	225	75	7	525	44	13	21	20	1.86
9636435--9636579	64	2.3	63	87	3	202	48	13	20	17	1.81
9636930--9636978	18	2.7	18	93	0	80	30	6	24	38	1.80
9638029--9638091	23	2.9	22	77	20	69	6	7	4	80	1.00
9638056--9638131	20	3.9	19	74	8	64	5	11	2	80	0.98
9638056--9638129	18	3.9	18	81	13	78	5	12	2	79	1.00
9638065--9638112	10	4.8	10	77	10	53	6	12	0	81	0.87
9638003--9638119	9	12.0	9	70	19	58	5	13	4	76	1.10
9638075--9638167	42	2.3	39	79	13	100	6	19	2	72	1.17
9638412--9638450	11	3.5	11	86	6	53	7	10	0	82	0.86
9641332--9641385	18	3.0	19	78	10	69	68	1	11	18	1.28
9642307--9642347	19	2.2	19	87	12	59	78	4	4	12	1.07
9642822--9642959	50	2.7	51	77	3	152	38	15	9	36	1.80
9642819--9642966	52	2.9	50	77	4	161	37	17	8	36	1.81
9643551--9643835	86	3.3	86	83	1	302	44	14	16	24	1.84
9648492--9648543	21	2.5	21	73	17	54	11	30	3	53	1.54
9649535--9649576	22	2.0	22	85	4	59	11	28	0	59	1.33
9655147--9655377	119	1.9	118	86	4	322	33	8	5	52	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9655256--9655394	75	1.9	73	85	7	192	32	9	4	53	1.52
9655386--9655494	55	2.0	56	85	1	148	34	13	4	46	1.64
9656523--9656562	18	2.2	19	86	4	55	15	7	0	77	0.98
9661281--9661310	10	3.1	10	95	4	53	36	0	0	63	0.95
9664330--9664590	130	2.0	131	86	3	366	37	11	9	42	1.72
9664712--9664759	25	2.0	25	83	4	62	47	6	8	37	1.59
9667275--9667477	86	2.4	86	81	6	216	41	17	12	28	1.86
9667281--9667479	43	4.6	42	79	8	188	43	16	13	27	1.84
9679187--9679228	4	10.5	4	84	0	57	71	2	4	21	1.16
9679595--9679633	19	2.1	19	100	0	78	35	33	10	20	1.86
9679980--9680049	4	17.5	4	77	5	61	72	2	7	17	1.19
9679983--9680029	24	2.0	24	91	0	76	72	2	8	17	1.19
9680822--9680990	60	2.8	58	70	5	140	36	15	16	31	1.90
9683330--9683370	21	2.0	21	95	0	73	46	4	7	41	1.53
9685754--9685829	33	2.2	33	82	13	84	35	9	7	47	1.65
9701757--9701805	16	2.9	16	87	6	62	77	2	2	18	0.96
9701750--9701793	16	2.6	17	75	10	54	77	2	2	18	0.98
9702068--9702137	31	2.3	31	84	0	95	48	21	5	24	1.71
9702668--9702706	3	13.0	3	100	0	78	66	0	0	33	0.92
9702969--9703466	114	4.3	114	80	4	408	43	14	22	19	1.87
9703582--9703644	17	3.7	17	71	0	54	41	9	11	38	1.73
9703754--9703818	18	3.6	17	75	8	58	36	7	15	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9703907--9704187	86	3.3	85	78	5	291	39	11	18	31	1.86
9703844--9704191	170	2.0	171	82	4	427	39	12	18	29	1.88
9705095--9705181	7	11.9	7	73	17	54	1	11	6	80	0.95
9705131--9705213	17	4.3	19	70	14	64	4	14	1	79	0.95
9705131--9705182	10	5.2	10	84	6	61	1	13	0	84	0.70
9705138--9705194	26	2.2	25	81	12	62	5	12	1	80	0.95
9705153--9705228	35	2.2	35	81	9	84	7	14	3	73	1.20
9707633--9707684	26	2.0	26	100	0	104	23	19	23	34	1.96
9707925--9707958	16	2.1	16	89	10	52	41	11	20	26	1.87
9709230--9709281	26	1.9	28	88	7	81	19	3	13	63	1.44
9709311--9709385	32	2.2	34	79	9	82	26	2	8	62	1.36
9709330--9709393	32	2.0	32	81	6	76	26	3	7	62	1.38
9709330--9709394	33	2.0	32	84	3	85	26	3	7	63	1.36
9709729--9709811	31	2.7	31	86	0	121	49	19	4	26	1.68
9717361--9717391	2	15.5	2	100	0	62	51	0	0	48	1.00
9718028--9718147	60	2.0	60	98	0	231	34	5	13	47	1.64
9727761--9727815	27	2.0	28	89	10	87	41	18	0	40	1.50
9728217--9728274	28	2.1	28	96	0	107	44	12	6	36	1.68
9734004--9734123	60	2.0	60	98	0	231	34	5	13	47	1.64
9735399--9735429	9	3.4	9	95	0	53	41	3	12	41	1.59
9743774--9743827	27	2.0	27	92	0	90	42	16	0	40	1.48
9744229--9744286	28	2.1	28	96	0	107	44	12	6	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9748517--9748548	2	16.0	2	100	0	64	50	0	0	50	1.00
9749383--9749449	26	2.7	26	84	6	77	34	4	4	56	1.39
9749401--9749454	26	2.1	26	92	0	90	35	5	9	50	1.58
9749406--9749470	26	2.5	26	85	2	87	32	6	9	52	1.58
9752337--9754604	580	4.0	577	92	4	3704	32	19	12	35	1.90
9758153--9758195	2	21.5	2	90	0	68	44	4	0	51	1.22
9758291--9758332	13	3.2	13	86	6	57	54	0	2	42	1.13
9758442--9758485	12	3.5	12	84	6	52	50	4	2	43	1.35
9759773--9759828	29	1.9	29	88	0	85	37	5	0	57	1.22
9762371--9762404	2	17.0	2	100	0	68	0	50	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195