genome.fa.s112.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  66  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12954479--12954558	25	3.2	25	81	0	106	46	32	3	17	1.66
12955081--12955217	62	2.2	62	83	6	179	42	13	13	31	1.82
12955111--12956090	186	5.2	186	86	2	1304	39	11	14	34	1.82
12955111--12956090	376	2.6	370	85	4	1293	39	11	14	34	1.82
12955921--12956340	125	3.4	121	69	8	290	38	12	13	35	1.83
12964828--12964863	2	18.0	2	94	0	63	47	2	0	50	1.15
12965834--12965864	11	2.8	11	100	0	62	19	0	29	51	1.47
12965889--12966045	52	3.0	51	84	1	188	40	8	24	26	1.83
12966905--12966935	11	2.8	11	100	0	62	19	0	29	51	1.47
12966960--12967115	52	3.0	52	84	6	176	40	9	25	24	1.85
12966981--12967115	51	2.6	52	83	3	175	40	8	25	24	1.84
12974874--12974909	19	1.9	18	88	5	54	16	0	0	83	0.65
12976854--12976884	2	15.5	2	93	0	53	51	3	0	45	1.17
12978950--12979028	36	2.3	35	82	4	88	54	1	2	41	1.22
12983218--12983309	48	2.0	46	84	4	121	34	2	6	56	1.37
12985516--12985554	21	2.0	21	90	10	64	12	10	23	53	1.69
12986350--12986396	24	2.0	24	82	0	58	14	8	12	63	1.50
12986441--12986482	22	2.0	22	86	13	61	21	9	7	61	1.50
12987952--12987997	22	2.1	22	87	0	65	45	13	17	23	1.83
12992413--12992475	25	2.4	25	81	5	72	23	11	17	47	1.79
12993992--12994031	21	2.0	21	90	9	66	15	10	22	52	1.71
12994900--12995022	4	30.8	4	73	16	71	31	0	2	65	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12994891--12995022	17	8.2	16	68	21	80	31	0	3	65	1.13
12994893--12995022	25	5.4	25	77	15	94	31	0	3	64	1.14
12994900--12995022	29	4.1	29	79	14	99	31	0	2	65	1.12
12994930--12994993	23	2.9	22	80	15	78	34	0	1	64	1.03
12995065--12995099	16	2.1	17	94	5	63	11	14	11	62	1.54
12995925--12996034	9	12.0	9	68	21	52	19	4	2	73	1.13
12995960--12996016	27	2.1	27	81	12	64	15	7	1	75	1.10
12995967--12996034	15	4.3	15	75	14	66	13	7	1	77	1.03
12996016--12996057	22	1.9	22	85	9	59	14	11	2	71	1.24
12996070--12996450	57	6.8	57	81	8	424	44	7	13	34	1.73
13000646--13000704	22	2.7	23	84	7	77	38	8	18	33	1.81
13000888--13000969	43	1.9	42	82	7	103	40	10	13	35	1.80
13001233--13001452	43	5.2	42	88	3	302	23	16	24	35	1.94
13001233--13001452	41	5.2	41	88	4	298	23	16	24	35	1.94
13001233--13001451	84	2.6	82	89	5	305	23	15	24	36	1.94
13001746--13001818	21	3.5	21	76	22	73	35	0	2	61	1.10
13001746--13001803	23	2.6	22	80	17	75	36	0	1	62	1.06
13001761--13001820	19	3.2	19	76	19	63	35	0	3	61	1.12
13002763--13002798	13	2.9	12	88	8	54	19	0	2	77	0.88
13002764--13002795	17	1.9	16	93	6	55	15	0	3	81	0.82
13002834--13002883	18	2.8	18	74	14	50	14	8	2	76	1.10
13002866--13002908	22	2.0	22	86	9	61	13	13	2	69	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13002924--13003320	59	6.7	57	84	8	460	42	8	15	33	1.77
13002922--13003320	118	3.4	117	86	5	552	43	8	15	33	1.76
13003177--13003273	32	3.2	32	63	19	89	41	9	14	35	1.78
13006152--13006194	22	2.0	22	90	0	68	44	9	11	34	1.73
13010037--13010080	22	2.0	22	95	0	79	43	13	11	31	1.80
13016063--13016104	14	2.9	15	79	10	52	78	2	2	16	0.96
13016976--13017114	43	3.1	44	71	19	122	43	15	12	27	1.84
13020660--13020698	21	1.9	21	89	5	62	17	10	12	58	1.61
13021332--13021455	19	6.7	19	69	16	75	42	12	13	30	1.82
13021418--13021452	18	1.9	18	94	0	61	42	20	11	25	1.85
13021487--13021554	35	1.9	35	87	0	100	44	19	13	23	1.85
13021631--13021669	17	2.3	17	86	0	51	48	7	15	28	1.72
13021668--13021716	16	3.1	16	75	0	53	34	12	12	40	1.80
13022283--13022437	24	6.7	24	86	5	180	40	13	4	41	1.65
13022328--13022396	14	5.5	13	70	26	60	39	15	2	42	1.63
13023557--13023642	9	10.7	7	84	11	64	11	16	1	70	1.21
13023540--13023643	17	6.2	17	84	13	121	11	17	0	70	1.22
13023540--13023660	8	14.9	8	80	16	117	10	16	1	71	1.22
13024462--13024495	13	2.4	15	85	14	54	58	5	23	11	1.55
13026519--13026582	29	2.2	29	86	2	94	42	7	14	35	1.74
13026641--13026919	140	2.0	140	91	1	452	26	20	17	36	1.94
13028161--13028212	24	2.1	26	82	7	63	9	11	3	75	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13042668--13042738	7	9.9	7	77	19	67	83	1	14	1	0.79
13042672--13042735	30	2.1	30	86	11	87	84	1	12	1	0.77
13047769--13048181	158	2.6	157	82	6	487	28	24	26	20	1.99
13049121--13049423	149	2.0	149	84	2	394	20	27	26	26	1.99
13049341--13049505	82	2.0	82	82	6	201	22	36	24	16	1.94
13050475--13050761	45	6.4	45	72	3	182	22	29	25	22	1.99
13050479--13050761	90	3.1	88	73	6	253	22	30	24	22	1.99
13050815--13050924	45	2.4	45	87	0	148	20	27	30	22	1.98
13050659--13051039	206	1.8	207	83	2	507	21	29	26	22	1.99
13050863--13051074	117	1.8	117	81	0	262	19	27	28	23	1.98
13055742--13055827	45	1.9	45	83	9	113	17	30	26	25	1.97
13055927--13056291	149	2.4	148	82	4	396	22	26	21	29	1.99
13056899--13056994	45	2.1	45	86	3	131	23	35	21	18	1.96
13056922--13057266	162	2.1	160	81	5	392	20	31	26	21	1.98
13057303--13057417	45	2.6	45	73	4	124	23	23	27	25	2.00
13057303--13057466	90	1.8	90	84	2	222	22	24	28	25	2.00
13070636--13070669	6	5.5	6	89	3	50	0	82	0	17	0.67
13072982--13073081	45	2.2	45	81	0	128	21	25	30	24	1.99
13072835--13073099	135	2.0	134	80	0	296	21	27	27	23	1.99
13073002--13073106	45	2.3	45	83	0	129	26	31	21	20	1.98
13084239--13084593	148	2.4	149	82	3	412	20	25	25	29	1.99
13085208--13085584	162	2.3	161	78	1	405	21	30	26	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13085508--13085674	90	1.9	90	87	5	248	16	31	29	22	1.96
13085478--13085684	45	4.6	45	78	3	193	18	31	28	21	1.97
13091639--13091942	149	2.0	149	83	3	378	23	27	24	24	2.00
13092895--13093124	90	2.6	90	78	1	246	19	26	31	22	1.98
13092985--13093122	45	3.1	44	75	2	114	18	26	33	22	1.96
13092823--13093071	135	1.8	135	85	3	349	19	26	30	23	1.98
13092955--13093145	90	2.1	90	82	1	222	21	27	29	21	1.98
13107764--13107789	13	2.0	13	100	0	52	30	15	30	23	1.95
13108140--13108351	90	2.4	90	82	1	264	18	27	29	24	1.98
13108205--13108360	45	3.5	44	73	3	132	19	28	28	23	1.98
13116377--13116480	45	2.3	45	75	6	113	23	31	25	20	1.98
13121767--13121905	71	2.0	71	82	0	170	30	29	20	19	1.97
13136706--13136828	45	2.7	45	82	0	120	19	31	27	21	1.97
13137034--13137098	27	2.4	27	97	0	121	16	36	23	23	1.94
13146829--13147057	45	5.1	44	73	5	165	19	28	28	23	1.98
13146558--13146932	162	2.3	161	79	2	412	21	29	26	22	1.99
13146844--13147136	45	6.5	45	73	6	155	21	30	26	21	1.98
13146826--13147083	135	1.9	135	80	1	302	20	29	27	22	1.98
13151844--13152224	150	2.6	148	83	6	457	20	26	25	27	1.99
13152281--13152342	26	2.3	27	83	10	74	25	3	6	64	1.33
13168355--13168756	150	2.7	149	83	4	461	20	27	25	26	1.99
13169187--13169219	11	3.0	11	95	0	57	18	33	27	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13174011--13174073	27	2.3	27	100	0	126	11	39	19	30	1.86
13175733--13175785	22	2.4	22	93	0	88	28	43	18	9	1.81
13183280--13183307	6	4.7	6	100	0	56	14	50	0	35	1.43
13198065--13198422	150	2.4	149	83	3	425	19	26	25	28	1.99
13198125--13198422	149	2.0	150	85	2	402	20	28	24	27	1.99
13198492--13198543	26	1.9	28	88	7	81	28	7	11	51	1.65
13199022--13199438	162	2.6	161	78	3	419	21	31	25	21	1.98
13199328--13199419	45	2.0	45	85	0	121	16	31	31	20	1.95
13199346--13199438	45	2.1	45	83	0	114	17	34	27	20	1.95
13199540--13199578	19	2.1	19	100	0	78	20	25	28	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195