genome.fa.s112.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  45  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9388338--9388377	17	2.4	16	84	12	53	52	2	0	45	1.14
9388665--9388718	23	2.4	22	75	15	56	44	0	1	53	1.11
9388737--9388781	19	2.6	17	80	16	56	57	4	0	37	1.19
9389463--9389511	22	2.1	24	82	17	59	51	2	0	46	1.12
9389976--9390040	29	2.2	30	75	8	71	50	1	1	46	1.20
9390396--9390429	16	2.1	16	88	0	50	82	5	0	11	0.83
9390579--9390649	19	3.8	18	74	5	61	77	2	5	14	1.06
9390580--9390655	29	2.7	28	80	11	84	78	2	5	13	1.02
9391039--9391072	9	3.7	9	88	7	50	41	0	2	55	1.15
9391671--9391719	16	3.1	16	79	8	55	32	2	0	65	1.04
9396778--9396821	22	2.0	23	86	4	63	40	25	2	31	1.68
9401694--9401746	3	17.7	3	92	0	88	28	0	1	69	0.99
9404017--9404114	47	2.1	47	92	0	160	32	7	14	45	1.72
9404134--9404218	17	5.1	17	73	11	77	34	2	12	50	1.54
9404191--9404293	40	2.6	40	81	6	120	29	0	19	50	1.54
9404237--9404267	16	1.9	16	93	0	53	32	0	16	51	1.44
9404275--9404341	17	4.1	16	67	9	55	26	2	14	55	1.54
9404303--9404381	41	1.9	41	86	0	113	27	3	11	56	1.51
9404610--9404684	25	3.1	25	73	7	82	42	0	4	53	1.19
9404592--9404705	48	2.4	48	89	4	169	44	0	3	51	1.18
9404617--9404701	25	3.5	23	72	13	73	43	0	2	54	1.13
9404962--9404995	15	2.2	16	89	5	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9408434--9408458	1	25.0	1	100	0	50	100	0	0	0	0.00
9409612--9409642	16	1.9	16	93	0	53	51	0	3	45	1.17
9409727--9409756	15	2.1	15	93	6	53	46	6	0	46	1.29
9410483--9410606	11	11.2	11	68	26	59	24	5	0	70	1.09
9410500--9410601	30	3.5	30	76	16	99	23	5	0	70	1.09
9410484--9410608	24	5.6	21	71	21	62	23	6	0	70	1.10
9410486--9410606	47	2.4	52	81	14	148	23	5	0	70	1.09
9410526--9410608	21	4.0	19	80	14	85	20	7	0	72	1.08
9411078--9411294	75	2.7	82	85	10	304	54	22	4	18	1.60
9411338--9411384	20	2.3	20	96	0	85	59	19	2	19	1.48
9411501--9411557	26	2.2	26	87	6	80	19	21	26	33	1.97
9413693--9413783	47	1.9	47	91	4	148	41	9	10	37	1.74
9413889--9413920	6	5.3	6	92	0	55	65	0	3	31	1.08
9413843--9414012	86	1.9	89	81	12	210	54	2	2	40	1.28
9414003--9414034	2	16.0	2	100	0	64	50	0	0	50	1.00
9414556--9414610	22	2.4	23	82	11	60	74	0	10	14	1.07
9416845--9417000	52	3.0	51	81	13	169	26	25	8	40	1.83
9417025--9417055	11	2.8	11	100	0	62	51	29	0	19	1.47
9417931--9418086	52	3.0	51	80	6	161	26	23	8	41	1.84
9419217--9419247	11	2.8	11	95	0	53	51	25	0	22	1.48
9420123--9420246	52	2.4	51	86	1	167	27	27	9	35	1.88
9420123--9420278	52	3.0	52	80	6	165	25	25	9	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9420303--9420344	11	3.8	11	93	0	75	50	28	0	21	1.49
9420303--9420345	22	2.0	22	100	0	86	48	27	0	23	1.51
9422377--9422434	3	19.3	3	100	0	116	32	0	0	67	0.91
9423305--9423355	22	2.3	23	83	6	70	56	3	1	37	1.29
9423889--9423924	15	2.4	15	90	0	54	19	2	5	72	1.17
9423993--9424033	3	13.3	3	89	5	64	31	2	0	65	1.05
9428328--9428352	12	2.1	12	100	0	50	8	20	24	48	1.76
9435868--9435951	43	2.0	43	95	0	150	39	4	30	25	1.76
9444757--9444801	21	2.1	22	83	4	56	44	13	20	22	1.85
9446111--9446154	22	1.9	23	90	9	72	45	4	4	45	1.44
9446214--9446411	58	3.4	58	83	1	236	33	12	3	50	1.58
9448199--9448252	15	3.4	16	82	10	67	40	11	14	33	1.82
9448249--9448315	17	4.0	17	74	1	64	43	10	22	23	1.84
9448976--9449024	21	2.3	23	79	13	59	44	10	4	40	1.57
9450169--9450248	8	9.8	8	72	8	63	13	13	1	71	1.21
9450156--9450199	16	2.8	16	90	10	65	6	11	0	81	0.86
9462478--9462823	182	1.9	182	90	2	561	32	22	19	24	1.97
9468895--9468919	12	2.1	12	100	0	50	24	0	44	32	1.54
9481684--9481708	11	2.3	11	100	0	50	40	16	20	24	1.91
9485030--9485067	17	2.3	17	81	4	51	50	13	10	26	1.73
9485208--9485238	16	1.9	16	93	0	53	45	0	0	54	0.99
9491960--9492118	24	6.4	24	68	12	97	31	4	0	64	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9491985--9492124	28	5.5	26	78	17	143	31	5	0	63	1.16
9491960--9492118	52	3.2	50	84	7	207	31	4	0	64	1.13
9492058--9492107	22	2.3	22	92	0	82	34	6	0	60	1.21
9492938--9492994	6	8.3	7	76	23	59	28	3	0	68	1.06
9492950--9492990	3	13.7	3	89	0	64	29	2	0	68	1.03
9493208--9493262	15	3.8	14	76	7	56	7	12	3	76	1.12
9504642--9504925	41	6.8	41	83	5	313	23	15	21	38	1.92
9505131--9505178	19	2.5	19	80	6	62	27	2	2	68	1.11
9505173--9505268	8	12.2	8	68	19	51	33	6	0	60	1.22
9505172--9505220	24	2.0	24	96	0	89	32	6	0	61	1.21
9505233--9505285	22	2.4	22	93	0	88	32	3	0	64	1.12
9505165--9505293	55	2.4	54	85	12	185	31	5	0	62	1.18
9505955--9505985	16	2.0	15	93	6	53	22	32	19	25	1.97
9506095--9506190	18	5.2	18	70	17	56	22	3	2	71	1.10
9506155--9506191	6	6.3	6	90	3	58	16	2	0	81	0.81
9506145--9506191	23	2.0	24	88	12	71	17	6	0	76	0.98
9506155--9506191	18	2.1	17	95	5	65	16	2	0	81	0.81
9506210--9506430	58	3.8	58	91	5	347	40	5	14	39	1.70
9508070--9508113	22	2.0	22	95	0	79	43	13	11	31	1.80
9511750--9511826	25	3.2	24	81	5	75	44	18	22	15	1.87
9511787--9511843	23	2.5	24	91	8	100	49	15	22	12	1.78
9511992--9512035	22	2.0	22	100	0	88	45	13	9	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9539115--9539200	21	4.2	21	81	7	90	55	0	3	40	1.17
9542580--9542605	13	2.0	13	100	0	52	84	0	0	15	0.62
9546832--9546869	15	2.4	17	87	12	55	23	0	2	73	0.95
9547309--9547360	16	3.2	16	76	10	52	32	3	0	63	1.12
9547972--9548017	13	3.0	16	78	15	53	45	2	0	52	1.13
9550260--9550349	26	3.4	26	66	22	62	33	10	22	34	1.87
9550261--9550373	53	2.1	52	82	12	133	31	8	21	38	1.84
9550384--9550431	20	2.4	20	89	0	69	29	12	14	43	1.82
9551259--9551290	16	2.0	17	88	11	50	21	0	18	59	1.38
9551335--9551387	19	2.8	19	82	5	63	77	7	5	9	1.12
9552593--9552639	17	2.8	17	78	18	53	34	6	2	57	1.36
9555544--9555593	25	2.0	25	100	0	100	44	12	4	40	1.60
9560016--9560114	48	2.0	49	82	5	121	57	6	12	24	1.57
9566265--9566317	21	2.5	21	90	9	81	73	1	15	9	1.17
9566268--9566329	11	5.6	10	78	21	54	75	1	14	8	1.10
9566268--9566329	12	5.5	11	78	18	65	75	1	14	8	1.10
9566267--9566331	33	1.9	33	87	9	96	72	1	16	9	1.18
9566265--9566331	21	3.2	20	85	14	66	71	1	16	10	1.20
9567663--9568110	43	10.3	43	76	3	324	25	12	15	45	1.81
9568342--9568393	24	2.2	24	82	6	61	23	0	26	50	1.50
9569773--9569868	48	2.0	49	83	2	122	54	9	11	25	1.66
9570509--9570547	8	4.9	8	83	0	51	82	0	15	2	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9571906--9571999	45	2.1	45	85	0	125	56	6	11	25	1.58
9580387--9580460	8	10.7	7	80	17	59	81	0	8	10	0.89
9580376--9580460	39	2.1	41	85	8	113	80	0	9	10	0.92
9580402--9580471	24	2.9	24	80	6	79	80	0	8	11	0.92
9580374--9580453	24	3.2	25	79	11	83	81	0	8	10	0.88
9580403--9580451	6	7.8	6	80	17	55	83	0	6	10	0.80
9581073--9581374	79	3.8	79	85	1	390	35	6	24	33	1.81
9581067--9581359	158	1.9	158	88	1	453	35	6	23	33	1.82
9581707--9581777	33	2.2	33	87	5	99	28	15	19	36	1.92
9582062--9582818	43	18.0	43	72	14	436	24	10	16	48	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195