genome.fa.s112.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  139  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23408054--23408166	42	2.7	42	84	0	154	36	23	16	23	1.94
23408192--23408310	42	2.9	42	85	8	138	34	16	17	31	1.93
23408249--23408349	41	2.5	41	81	0	112	40	16	11	30	1.85
23409347--23409394	13	3.8	13	78	13	55	8	16	0	75	1.04
23409340--23409409	30	2.4	31	80	17	78	10	12	0	77	1.00
23409389--23409413	9	2.8	9	100	0	50	8	0	0	92	0.40
23421143--23421251	29	3.7	29	68	22	84	38	10	5	45	1.61
23421039--23421276	58	4.1	58	85	3	282	41	9	5	44	1.59
23421273--23421390	10	10.9	10	74	17	71	71	2	1	24	1.08
23421321--23421388	3	23.0	3	79	19	65	70	1	0	27	0.96
23421321--23421388	19	3.6	19	76	23	65	70	1	0	27	0.96
23422043--23422210	4	43.8	4	69	16	58	69	1	3	25	1.14
23422056--23422121	17	3.9	17	73	25	59	63	0	4	31	1.14
23422063--23422115	20	2.8	20	91	5	83	64	0	3	32	1.12
23422044--23422177	14	9.7	13	68	20	67	66	1	3	28	1.18
23422039--23422161	49	2.5	51	79	13	134	68	1	3	26	1.14
23422169--23422211	17	2.4	18	88	7	61	81	2	2	13	0.89
23422311--23422382	35	2.1	35	100	0	144	50	0	33	16	1.46
23427208--23427313	32	3.3	30	74	11	95	50	5	4	39	1.47
23429601--23429714	59	2.0	54	83	8	138	32	17	19	30	1.95
23433031--23433078	16	3.1	16	77	17	55	37	2	8	52	1.44
23433259--23433313	26	2.1	27	86	3	76	29	1	27	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23433223--23433448	62	3.7	62	77	8	178	39	3	15	41	1.64
23433417--23433489	36	2.0	36	84	5	94	52	5	5	36	1.48
23434589--23434618	5	5.8	5	92	7	51	20	3	0	76	0.92
23442606--23442758	68	2.3	66	77	8	146	47	7	1	43	1.42
23448952--23448995	22	2.0	22	95	0	79	31	11	13	43	1.80
23460705--23460773	6	11.2	6	73	17	52	59	0	1	39	1.06
23460707--23460766	18	3.6	17	81	14	63	56	0	1	41	1.09
23460699--23460749	14	3.8	13	75	19	52	60	0	1	37	1.08
23460778--23460830	16	3.4	15	80	15	63	45	3	5	45	1.45
23461928--23461966	5	7.8	5	88	0	60	25	0	0	74	0.82
23461989--23462049	25	2.5	24	81	7	61	63	1	0	34	1.04
23461989--23462035	22	2.0	24	84	8	62	63	2	0	34	1.06
23463775--23463821	16	2.9	16	84	6	51	46	0	0	53	1.00
23467018--23467054	16	2.3	16	90	0	56	40	16	2	40	1.62
23468197--23468222	12	2.2	12	100	0	52	34	7	15	42	1.75
23469589--23469773	97	1.9	97	87	2	273	45	9	10	34	1.71
23474282--23474315	2	17.0	2	100	0	68	0	50	0	50	1.00
23474315--23474347	2	16.5	2	100	0	66	48	0	0	51	1.00
23475065--23475089	13	1.9	13	100	0	50	44	0	0	56	0.99
23478688--23478714	3	9.0	3	100	0	54	33	0	0	66	0.92
23478814--23478878	17	3.8	17	80	8	71	72	0	4	23	1.03
23479291--23479323	14	2.5	14	90	9	52	3	21	0	75	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23479295--23479325	16	1.9	16	93	0	53	3	22	0	74	0.96
23479455--23479586	51	2.7	48	78	4	131	40	16	7	35	1.77
23480673--23480745	9	7.8	9	74	8	56	6	9	2	80	0.98
23480673--23480712	21	1.9	21	94	0	71	7	5	2	85	0.83
23480658--23480731	27	2.7	27	83	10	80	6	10	1	81	0.94
23484624--23484661	20	2.0	20	84	5	51	34	0	10	55	1.34
23484711--23484742	13	2.5	13	89	0	55	6	0	9	84	0.78
23484771--23484843	16	4.6	16	74	16	71	71	0	4	24	1.04
23492935--23492977	20	2.2	19	84	12	52	76	16	0	6	0.99
23492935--23492979	21	2.2	20	84	4	54	77	15	0	6	0.96
23500396--23500435	19	2.1	19	90	0	62	37	0	27	35	1.57
23501191--23501224	17	2.0	17	94	0	59	44	11	17	26	1.83
23510378--23510415	18	2.1	18	90	0	58	28	2	23	44	1.67
23512874--23512945	21	3.3	21	81	14	83	34	4	6	54	1.47
23514622--23514999	138	2.7	138	84	4	447	27	10	12	49	1.73
23514622--23515052	138	3.1	134	77	13	426	26	9	13	49	1.74
23516185--23516230	16	2.9	16	81	9	58	78	0	17	4	0.91
23516164--23516238	16	4.4	17	77	14	57	72	0	20	8	1.10
23517314--23517502	70	2.7	69	80	7	218	28	12	16	42	1.84
23517892--23517954	22	2.9	22	79	9	74	33	17	19	30	1.95
23517895--23518014	44	2.7	43	81	7	134	31	20	17	30	1.96
23518508--23518643	38	3.6	38	81	8	152	27	13	19	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23518665--23518800	38	3.5	38	84	4	175	32	10	20	36	1.86
23520242--23520298	29	2.0	29	89	0	87	38	19	14	28	1.90
23522161--23522220	13	4.8	13	79	6	61	15	8	25	51	1.70
23522276--23522375	13	7.8	13	68	6	60	22	10	19	49	1.77
23522199--23522455	78	3.3	76	63	16	175	24	14	17	42	1.87
23522276--23522377	26	4.0	26	82	6	100	22	9	18	49	1.77
23522276--23522364	39	2.3	39	76	5	92	22	10	17	49	1.77
23522187--23522479	155	1.9	155	95	0	532	23	14	18	43	1.86
23522431--23522549	13	9.2	13	73	0	103	21	12	20	46	1.83
23522431--23522582	26	5.9	26	76	11	100	19	12	22	45	1.84
23522432--23522582	52	2.9	52	79	5	139	19	12	22	45	1.84
23522191--23522531	155	2.2	155	88	3	481	23	14	18	43	1.87
23522458--23522583	26	5.0	24	80	8	117	19	13	23	42	1.87
23522510--23522606	25	3.8	25	83	6	99	15	13	28	42	1.85
23522722--23522773	21	2.5	20	87	6	77	25	1	1	71	1.07
23522735--23522780	21	2.2	21	88	7	67	30	2	0	67	1.03
23531271--23531392	59	2.1	58	92	1	199	30	23	13	32	1.93
23531840--23531927	38	2.3	37	83	11	99	36	6	13	43	1.71
23532451--23532479	14	2.1	14	100	0	58	31	6	13	48	1.69
23534236--23534355	24	5.3	24	73	18	98	33	3	6	56	1.42
23534251--23534336	20	4.0	21	81	6	77	34	4	5	54	1.45
23534303--23534342	20	2.0	20	90	0	62	37	5	7	50	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23534348--23534390	19	2.3	18	80	11	50	25	4	11	58	1.52
23534352--23534393	20	2.0	21	86	4	59	26	4	11	57	1.54
23534496--23534534	20	2.0	20	84	0	51	25	2	12	58	1.47
23535252--23535279	13	2.2	13	100	0	56	53	0	7	39	1.28
23535144--23535381	124	1.9	125	87	5	349	40	10	7	42	1.66
23536133--23536165	16	2.0	17	88	5	50	21	0	12	66	1.23
23538849--23538879	2	15.5	2	100	0	62	51	0	0	48	1.00
23539390--23539429	16	2.5	17	84	12	57	40	0	0	60	0.97
23539420--23539489	29	2.3	29	79	13	72	51	2	0	45	1.16
23539460--23539526	22	3.1	21	71	14	55	50	2	0	46	1.16
23541306--23541376	32	2.3	31	87	4	99	38	21	8	32	1.83
23541374--23541503	64	2.0	66	93	3	228	49	6	5	38	1.53
23545469--23545518	15	3.4	15	77	2	57	62	2	0	36	1.07
23552934--23552970	3	12.0	3	94	5	65	35	0	0	64	0.94
23553653--23553692	20	2.0	21	85	5	55	50	0	5	45	1.23
23557645--23557697	26	2.0	26	96	0	97	28	20	11	39	1.87
23558443--23558514	35	2.0	36	86	2	101	22	29	19	29	1.98
23561133--23561448	160	2.0	161	89	0	481	35	17	11	36	1.85
23564348--23564397	3	16.3	3	87	4	73	64	2	2	32	1.16
23564586--23564619	18	1.9	17	88	5	50	73	2	2	20	1.09
23564782--23564881	14	7.0	14	71	4	65	49	31	2	18	1.59
23568905--23568929	12	2.1	12	100	0	50	60	0	16	24	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23569138--23569166	14	2.0	15	93	6	51	44	6	27	20	1.77
23569128--23569302	93	1.9	93	85	4	246	36	9	25	28	1.87
23570713--23570816	36	3.0	35	73	9	95	20	17	11	50	1.76
23570766--23570839	34	2.2	33	83	9	87	18	17	10	52	1.73
23570775--23570847	34	2.1	34	80	9	78	19	21	12	46	1.82
23570869--23571021	35	4.4	35	80	0	146	21	18	8	51	1.72
23571016--23571260	34	7.1	34	73	8	147	20	24	11	44	1.83
23571042--23571169	68	1.9	68	85	0	175	17	25	12	45	1.83
23571026--23571339	34	9.2	34	68	9	102	19	23	12	44	1.84
23571029--23571356	172	1.9	170	81	6	394	19	22	12	45	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195