genome.fa.s112.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  20  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4626727--4626765	20	2.0	20	84	0	51	64	7	2	25	1.33
4635434--4635501	28	2.4	30	83	11	81	47	1	10	41	1.47
4637284--4637317	2	17.5	2	93	6	61	52	0	47	0	1.00
4650536--4650695	29	5.6	28	76	8	153	18	1	31	48	1.56
4650529--4650636	14	7.7	14	69	14	71	17	0	29	51	1.51
4650536--4650732	87	2.3	85	80	9	204	19	1	31	47	1.57
4650522--4650724	29	7.1	28	74	13	132	18	0	33	47	1.55
4650569--4650872	29	10.5	29	71	11	110	24	1	28	46	1.61
4650770--4650840	15	4.9	14	72	10	54	22	1	28	47	1.59
4650528--4650871	58	6.0	58	70	14	178	22	1	29	47	1.59
4650703--4650959	29	9.0	29	67	19	123	26	1	24	47	1.59
4650759--4650979	81	2.6	83	86	9	299	24	1	24	48	1.59
4651004--4651106	14	7.1	14	73	8	80	19	0	33	46	1.50
4651004--4651103	15	6.8	15	74	12	82	18	0	34	48	1.48
4651000--4651105	44	2.4	43	92	3	167	18	0	33	48	1.49
4657204--4657231	2	14.0	2	100	0	56	0	50	0	50	1.00
4658919--4658985	34	1.9	34	87	3	98	64	2	5	26	1.31
4668355--4668380	12	2.2	12	100	0	52	34	23	0	42	1.54
4677039--4677097	21	2.6	22	84	7	66	38	3	0	57	1.15
4680223--4680268	3	15.3	3	100	0	92	34	0	0	65	0.93
4680680--4680734	10	5.3	10	74	8	56	60	1	7	30	1.35
4680679--4680736	11	5.5	11	77	8	57	56	1	8	32	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4681074--4681134	21	2.8	21	82	7	59	19	4	1	73	1.10
4681694--4681740	20	2.3	20	82	10	60	65	0	31	2	1.04
4682089--4682113	7	3.6	7	100	0	50	88	0	0	12	0.53
4682143--4682189	24	1.9	25	91	4	78	44	2	8	44	1.46
4686874--4686906	16	2.1	16	88	5	50	27	36	3	33	1.72
4688433--4688554	8	15.2	8	76	16	119	75	0	13	10	1.05
4688420--4688504	9	10.1	9	80	12	101	76	0	11	11	1.02
4688424--4688554	17	8.1	17	79	11	118	75	0	12	11	1.05
4688475--4688525	14	3.5	14	83	5	66	84	0	9	5	0.78
4688423--4688525	9	11.6	9	73	12	52	79	0	10	9	0.93
4689550--4689842	163	1.8	163	84	5	405	36	13	9	40	1.77
4691887--4692408	44	12.3	44	74	8	330	25	11	16	46	1.80
4691887--4692385	87	5.9	86	72	11	305	25	11	16	46	1.80
4691904--4692284	208	1.8	208	84	1	521	25	11	16	47	1.78
4692218--4692405	87	2.1	88	77	0	198	26	12	16	44	1.83
4692424--4692448	8	3.1	8	100	0	50	84	0	0	16	0.63
4692834--4692889	24	2.4	24	82	5	71	35	0	12	51	1.40
4696829--4696862	14	2.3	15	90	5	52	55	0	0	44	0.99
4697372--4697418	23	2.0	23	95	0	85	40	0	23	36	1.55
4698968--4699012	18	2.3	21	85	11	60	40	0	0	60	0.97
4704911--4704966	21	2.6	22	77	5	62	48	0	19	32	1.49
4710032--4710074	10	4.6	9	82	5	50	13	37	2	46	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4710035--4710076	20	2.2	19	86	4	57	14	40	2	42	1.58
4711247--4711271	12	2.1	12	100	0	50	24	20	32	24	1.98
4715334--4715370	2	18.5	2	94	0	65	2	51	0	45	1.15
4719159--4719336	89	2.0	89	94	0	311	31	13	15	39	1.86
4730416--4730459	22	2.0	22	95	0	79	40	2	4	52	1.34
4734267--4734308	22	1.9	22	90	0	66	38	11	4	45	1.62
4734598--4734640	21	2.1	20	83	12	52	32	4	2	60	1.30
4741030--4741095	32	2.1	32	88	0	96	39	0	3	57	1.14
4741545--4741573	14	2.0	15	93	6	51	0	10	0	89	0.48
4743189--4743264	24	3.3	22	75	18	66	27	2	2	67	1.18
4749106--4749163	25	2.3	25	82	5	73	41	3	1	53	1.28
4750038--4750108	30	2.4	30	82	0	79	40	4	1	53	1.29
4752309--4752343	16	2.2	16	100	0	70	31	0	11	57	1.34
4752380--4752454	8	9.1	8	76	13	55	18	0	2	78	0.86
4752387--4752447	29	2.1	28	88	8	88	19	0	3	77	0.91
4752380--4752504	37	3.4	36	80	16	134	21	2	2	73	1.06
4752380--4752457	6	13.0	6	81	12	81	19	0	2	78	0.87
4752392--4752483	43	2.1	44	84	11	120	19	2	3	75	1.05
4752477--4752589	4	27.5	4	69	16	54	30	2	1	65	1.16
4752389--4752676	21	14.1	20	68	21	95	26	3	2	68	1.18
4752483--4752572	27	3.5	25	75	13	76	31	2	2	64	1.18
4752496--4752576	25	3.3	24	78	14	85	30	1	2	65	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4752544--4752626	14	5.3	15	71	21	55	30	6	2	61	1.33
4752388--4752614	7	33.1	7	71	18	85	26	3	2	68	1.16
4752447--4752605	25	6.8	23	72	19	80	28	4	1	64	1.23
4752543--4752606	26	2.5	26	85	7	78	31	6	1	60	1.30
4752611--4752681	37	1.9	37	86	8	101	22	2	4	70	1.18
4753523--4753628	20	5.5	20	71	15	73	27	1	1	68	1.10
4753531--4753583	24	2.3	22	78	15	61	30	1	1	66	1.13
4753638--4753939	57	5.0	62	81	9	211	46	6	11	34	1.67
4753640--4754033	58	6.7	57	81	8	409	45	6	11	36	1.67
4753828--4753918	28	3.2	27	66	21	69	41	4	14	39	1.65
4753854--4753949	31	3.2	31	64	21	78	42	5	11	40	1.63
4753838--4753926	27	3.1	27	64	16	63	46	5	12	35	1.65
4757581--4757606	9	2.9	9	100	0	52	30	34	0	34	1.58
4764456--4764505	13	3.7	13	78	5	55	84	0	10	6	0.79
4764449--4764503	22	2.6	21	85	2	74	83	0	9	7	0.81
4765476--4765943	41	11.2	41	85	7	546	26	13	20	38	1.90
4765567--4765591	12	2.1	12	100	0	50	32	8	8	52	1.60
4765527--4765631	52	2.0	52	100	0	210	28	11	17	42	1.83
4766121--4766174	7	7.7	7	91	8	76	24	0	0	75	0.80
4766122--4766213	15	6.3	14	76	10	60	21	3	1	73	1.03
4766121--4766174	29	1.9	29	92	7	94	24	0	0	75	0.80
4766123--4766215	34	2.6	36	81	10	109	22	3	1	73	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4766187--4766324	4	33.2	4	68	18	61	30	2	2	63	1.23
4766123--4766327	26	7.3	26	72	18	103	27	3	1	66	1.18
4766123--4766335	7	30.1	7	69	21	69	27	3	1	67	1.17
4766195--4766324	22	5.7	22	73	19	88	30	3	2	63	1.22
4766284--4766355	36	1.9	39	83	8	96	29	4	2	63	1.27
4766267--4766348	16	5.1	16	72	14	53	29	4	2	63	1.28
4767231--4767292	15	4.1	15	80	13	58	14	4	0	80	0.87
4767254--4767295	17	2.4	16	85	14	57	21	0	0	78	0.75
4767259--4767349	10	8.8	10	70	17	53	23	1	3	72	1.06
4767347--4767477	61	2.1	63	80	12	164	44	7	10	37	1.68
4767369--4767495	61	2.1	59	88	7	193	48	7	11	33	1.67
4767517--4767683	58	2.9	58	77	4	194	40	7	13	38	1.72
4768644--4768678	12	2.8	12	86	4	52	71	20	8	0	1.11
4775250--4775315	30	2.2	30	80	0	78	37	12	9	40	1.74
4775289--4775405	30	3.9	29	76	6	101	37	15	5	41	1.72
4775289--4775405	60	2.0	60	82	3	146	37	15	5	41	1.72
4778902--4778931	15	1.9	16	93	6	53	23	30	20	26	1.98
4779034--4779066	16	2.0	17	88	5	50	48	0	6	45	1.27
4781566--4781617	21	2.3	23	87	9	72	28	0	0	71	0.87
4792193--4792293	27	3.6	27	66	17	64	51	1	2	43	1.28
4793778--4793807	15	2.0	15	93	0	51	26	3	63	6	1.35
4804925--4804977	21	2.5	20	75	6	52	52	3	3	39	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4804946--4804991	25	2.0	22	87	12	65	56	0	2	41	1.11
4804969--4805006	17	2.2	18	90	4	60	57	5	0	36	1.21
4805040--4805116	19	4.2	19	70	18	56	48	1	7	42	1.40
4809848--4810123	147	1.9	148	81	6	337	30	16	7	45	1.76
4810399--4810460	30	2.1	30	100	0	124	46	9	16	27	1.78
4814259--4814291	17	1.9	17	93	0	57	57	0	6	36	1.23
4815122--4815179	19	3.0	19	80	12	57	50	0	0	50	1.00
4815125--4815179	21	2.5	22	77	14	60	47	0	0	52	1.00
4815549--4815573	2	12.5	2	100	0	50	48	52	0	0	1.00
4815573--4815598	2	13.0	2	100	0	52	0	50	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195