genome.fa.s112.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  188  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33227093--33227118	2	13.0	2	100	0	52	50	0	0	50	1.00
33233613--33233641	4	7.2	4	100	0	58	75	0	0	24	0.80
33234232--33234893	222	3.0	219	87	3	911	21	27	22	29	1.99
33241595--33241917	162	2.0	162	94	0	565	23	17	17	41	1.89
33241649--33241919	54	5.0	54	71	11	214	23	17	17	41	1.90
33249222--33249246	2	12.5	2	100	0	50	48	0	52	0	1.00
33254838--33254876	15	2.7	15	84	15	55	66	10	5	17	1.39
33267128--33267233	33	3.3	33	69	15	105	44	11	0	43	1.46
33267109--33267241	62	2.1	62	93	2	223	42	12	0	44	1.46
33269993--33270031	20	2.0	20	90	9	64	33	0	2	64	1.08
33270574--33270607	17	2.1	16	88	5	50	61	8	0	29	1.26
33272109--33272153	19	2.3	21	75	21	53	42	0	0	57	0.98
33272121--33272150	10	3.1	10	95	4	53	36	0	0	63	0.95
33272123--33272152	9	3.2	9	95	4	51	36	0	0	63	0.95
33272525--33272581	14	3.7	14	72	20	51	49	7	3	40	1.47
33288180--33288255	30	2.5	30	72	10	75	51	2	3	42	1.34
33289236--33289287	28	1.9	28	88	7	81	30	5	5	57	1.46
33289235--33289299	26	2.4	28	82	10	82	35	4	4	55	1.41
33291306--33291505	106	1.9	106	86	2	285	37	16	15	31	1.89
33298533--33298898	184	2.0	185	89	1	556	25	13	17	43	1.86
33300375--33300414	14	2.7	14	84	7	53	40	0	0	60	0.97
33314420--33314469	23	2.2	23	82	7	57	16	4	24	56	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33320905--33321221	156	2.0	158	98	1	620	44	12	11	31	1.78
33323501--33323533	2	16.5	2	100	0	66	51	0	0	48	1.00
33325591--33325746	60	2.6	60	96	0	285	41	13	11	33	1.81
33327735--33327772	20	1.9	20	88	0	58	34	5	0	60	1.19
33339037--33339063	2	13.5	2	100	0	54	0	0	48	51	1.00
33340358--33340394	19	2.0	18	89	5	56	70	5	21	2	1.20
33348233--33348259	2	13.5	2	100	0	54	51	0	0	48	1.00
33352482--33352521	21	1.9	21	100	0	80	42	17	20	20	1.89
33356219--33356262	21	2.0	21	83	12	54	40	2	11	45	1.53
33362437--33362474	16	2.4	16	83	12	51	31	2	5	60	1.33
33365767--33365896	68	1.9	67	93	1	224	33	5	17	43	1.72
33366265--33366335	27	2.8	24	76	14	70	47	0	0	52	1.00
33366274--33366351	26	3.0	24	80	10	84	46	0	0	53	1.00
33367042--33367121	42	1.9	42	84	0	106	37	13	17	31	1.89
33373963--33374020	30	1.9	30	96	0	107	51	0	10	37	1.36
33373969--33374068	30	3.4	29	76	6	85	41	0	16	43	1.47
33374620--33374689	2	35.5	2	91	8	117	48	1	0	50	1.09
33376434--33376997	282	2.0	282	100	0	1128	24	19	23	32	1.97
33388045--33388095	27	1.9	26	88	4	75	62	9	27	0	1.26
33397530--33397559	7	4.4	7	95	4	53	10	0	0	90	0.47
33405142--33405255	31	3.8	30	79	17	121	37	0	3	57	1.22
33405326--33405350	12	2.1	12	100	0	50	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33406717--33406748	3	10.7	3	93	0	55	68	0	31	0	0.90
33421744--33421925	94	1.9	94	85	3	251	49	3	4	42	1.39
33421773--33421929	30	5.1	30	75	14	135	50	1	5	42	1.35
33422158--33422225	26	2.4	27	78	11	75	48	0	2	48	1.16
33422303--33422354	20	2.5	20	84	3	59	48	0	0	51	1.00
33425749--33425842	46	2.0	46	100	0	188	20	12	17	50	1.78
33438587--33438631	23	1.9	24	81	4	56	68	15	15	0	1.21
33454930--33454990	26	2.3	26	88	5	88	18	3	3	75	1.08
33456707--33456740	17	1.9	18	88	5	52	52	2	0	44	1.16
33456747--33456772	7	3.7	7	100	0	52	46	15	0	38	1.46
33471784--33471841	30	1.9	30	85	0	80	46	15	12	25	1.80
33474794--33474830	19	1.9	19	88	0	56	37	2	8	51	1.46
33483040--33483064	13	1.9	13	100	0	50	16	4	8	72	1.24
33483053--33483136	27	3.2	27	74	19	104	32	4	3	59	1.35
33483053--33483154	52	2.0	52	100	0	204	32	5	3	57	1.41
33483064--33483160	27	3.7	27	76	15	112	34	6	3	56	1.40
33483053--33483169	52	2.3	49	89	7	119	33	5	5	55	1.46
33483165--33483208	21	2.0	22	83	12	56	52	6	4	36	1.49
33483509--33483567	28	2.1	28	82	14	70	44	3	8	44	1.51
33487365--33487627	132	2.0	132	95	0	472	29	16	20	33	1.95
33488184--33488227	16	2.6	17	82	13	56	45	0	0	54	0.99
33488309--33488347	19	2.1	18	85	4	51	53	30	0	15	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33491085--33491124	16	2.4	17	95	4	73	55	0	2	42	1.13
33497200--33497523	161	2.0	162	95	0	587	25	7	25	42	1.80
33504702--33504742	2	20.5	2	100	0	82	0	48	0	51	1.00
33511855--33511994	21	6.5	21	67	8	75	22	7	49	20	1.73
33511917--33512012	42	2.3	42	92	0	156	23	6	45	23	1.75
33511854--33511988	66	2.0	66	84	0	171	21	7	48	22	1.74
33512008--33512129	21	5.7	21	72	9	50	21	6	48	23	1.73
33512089--33512130	21	2.0	21	85	0	57	19	7	54	19	1.66
33512253--33512356	21	5.0	21	73	0	73	19	5	52	22	1.66
33512638--33512924	81	3.6	79	80	7	310	6	11	37	44	1.67
33512647--33512967	162	2.0	162	80	2	367	5	12	36	45	1.66
33512728--33512968	81	3.0	80	81	3	223	5	12	36	44	1.66
33512948--33513008	27	2.2	28	82	8	72	1	8	37	52	1.41
33517610--33517653	11	4.3	10	83	16	54	36	0	0	63	0.95
33517601--33517646	21	2.3	21	85	7	60	39	0	2	58	1.10
33524541--33524628	25	3.5	24	80	16	90	40	1	0	57	1.06
33524567--33524619	14	3.9	14	73	16	58	45	0	0	54	0.99
33524700--33524747	24	2.0	24	95	0	87	52	0	2	45	1.12
33524733--33524785	14	3.8	14	79	20	58	54	1	1	41	1.22
33528582--33528763	92	2.0	92	93	0	310	40	2	7	50	1.43
33537733--33537762	2	15.0	2	100	0	60	50	0	0	50	1.00
33539128--33539155	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33542325--33542357	13	2.6	13	85	4	50	66	6	27	0	1.15
33546894--33546919	4	6.5	4	100	0	52	50	0	0	50	1.00
33556731--33556768	19	2.0	20	89	5	60	31	10	5	52	1.58
33564923--33564960	19	2.0	20	89	5	60	28	13	7	50	1.69
33578319--33578352	12	2.8	12	86	0	50	11	5	2	79	1.02
33578318--33578351	13	2.6	13	90	9	52	11	2	2	82	0.89
33585582--33585650	29	2.4	30	78	11	81	30	26	11	31	1.91
33595619--33595676	28	2.1	28	96	0	107	41	17	5	36	1.72
33605925--33605958	9	3.7	9	88	7	50	14	2	0	82	0.79
33608420--33608759	58	5.8	59	84	5	404	45	5	11	37	1.63
33612869--33613687	115	7.0	116	87	6	1176	31	12	15	40	1.85
33614383--33614414	17	1.9	17	93	6	57	43	0	0	56	0.99
33614928--33614956	2	14.5	2	100	0	58	48	0	0	51	1.00
33615366--33615439	17	4.1	18	74	14	55	58	0	0	41	0.98
33617375--33617413	19	2.0	21	90	10	64	69	2	0	28	1.02
33618359--33618392	17	2.0	17	88	0	50	70	8	0	20	1.13
33618869--33618961	32	2.9	31	85	6	132	39	31	29	0	1.57
33618869--33618951	17	5.1	16	66	16	55	40	27	31	0	1.57
33619511--33619711	101	2.0	101	99	0	393	41	18	13	25	1.88
33625221--33625294	35	2.1	35	92	0	121	56	21	5	16	1.59
33628654--33628683	2	15.0	2	100	0	60	50	0	0	50	1.00
33629228--33629406	58	3.0	59	84	3	252	34	7	5	52	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33629869--33629922	21	2.5	22	82	14	67	55	9	7	27	1.58
33630494--33630881	58	6.8	58	82	7	392	34	11	3	50	1.56
33633266--33633479	85	2.5	85	89	0	322	46	18	11	23	1.81
33633264--33633479	42	5.1	42	87	1	297	46	18	11	23	1.81
33633828--33633923	21	4.5	21	85	1	102	39	11	8	40	1.71
33633827--33633926	42	2.3	43	81	1	121	39	12	8	41	1.72
33634252--33634295	23	1.9	23	86	9	63	27	25	4	43	1.74
33634308--33634459	49	3.1	49	88	1	207	35	23	7	33	1.84
33635460--33635507	23	2.0	24	84	4	62	8	14	0	77	0.99
33638903--33638940	19	2.0	20	89	5	60	50	0	5	44	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195