genome.fa.s112.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  120  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20751613--20751661	25	1.9	26	87	4	73	30	18	26	24	1.98
20750580--20755855	893	6.0	893	78	9	5104	25	24	24	25	2.00
20754210--20754262	26	2.0	26	96	0	97	30	20	20	28	1.98
20755104--20755156	26	2.0	26	92	0	88	30	20	22	26	1.98
20752555--20755849	874	3.7	883	85	4	4006	25	23	24	26	2.00
20756586--20756638	26	2.0	26	96	0	97	26	18	26	28	1.98
20757475--20757527	26	2.0	26	96	0	97	26	18	26	28	1.98
20755939--20760258	888	4.9	887	94	1	6596	25	23	25	25	2.00
20758363--20758415	26	2.0	26	92	0	88	24	18	26	30	1.98
20759256--20759308	26	2.0	26	96	0	97	26	18	26	28	1.98
20760149--20760201	26	2.0	26	96	0	97	28	20	24	26	1.99
20761234--20761286	26	2.0	26	96	0	97	26	18	26	28	1.98
20762133--20762185	26	2.0	26	92	0	88	30	20	22	26	1.98
20764784--20764836	26	2.0	26	96	0	97	28	20	24	26	1.99
20760359--20771044	876	12.1	871	84	5	12528	25	24	24	25	2.00
20767428--20767480	26	2.0	26	100	0	106	26	20	26	26	1.99
20767658--20767682	12	2.1	12	100	0	50	8	28	64	0	1.22
20768293--20768345	26	2.0	26	92	0	88	26	13	26	33	1.93
20772499--20772551	26	2.0	26	85	7	72	28	20	26	24	1.99
20771036--20773978	899	3.3	895	87	3	4109	25	24	24	26	2.00
20773398--20773476	26	3.0	26	96	0	140	27	20	24	27	1.99
20774784--20774835	26	2.0	26	96	0	95	28	19	25	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20775722--20775774	26	2.0	26	85	0	70	24	18	26	30	1.98
20776789--20778234	712	2.0	714	89	0	2189	25	22	24	27	2.00
20779107--20779159	26	2.0	26	96	0	97	26	18	26	28	1.98
20777476--20781099	899	4.1	898	86	4	4815	25	24	25	25	2.00
20779989--20780041	26	2.0	26	96	0	97	26	18	26	28	1.98
20780890--20780940	26	2.0	26	88	0	75	29	19	23	27	1.98
20780890--20781284	185	2.1	185	84	4	503	21	25	29	24	1.99
20781654--20781703	26	1.9	26	87	0	73	30	20	22	28	1.98
20783412--20783464	26	2.0	26	92	0	88	30	20	22	26	1.98
20781420--20789538	872	9.2	887	83	6	8872	25	24	24	25	2.00
20784297--20789615	862	6.1	862	84	6	6405	25	24	25	25	2.00
20785159--20789592	885	5.0	893	84	5	5605	25	24	24	25	2.00
20790279--20790331	26	2.0	26	96	0	97	26	16	24	32	1.97
20792084--20792136	26	2.0	26	92	0	88	24	18	28	28	1.98
20789575--20792725	903	3.5	898	85	4	4086	26	23	24	26	2.00
20792871--20806438	903	15.2	888	79	7	12752	25	24	24	25	2.00
20797279--20797331	26	2.0	26	92	0	88	28	18	26	26	1.98
20798182--20798234	26	2.0	26	96	0	97	26	18	26	28	1.98
20799074--20799126	26	2.0	26	96	0	97	26	18	26	28	1.98
20800881--20800930	26	1.9	26	95	0	91	30	20	26	24	1.98
20801880--20801932	26	2.0	26	96	0	97	26	20	24	28	1.99
20802782--20802834	26	2.0	26	88	0	79	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20803517--20803569	26	2.0	26	92	0	88	26	20	26	26	1.99
20804407--20804465	26	2.3	26	88	5	95	25	18	27	28	1.98
20802808--20806505	897	4.1	894	88	2	5171	25	24	25	25	2.00
20805310--20805362	26	2.0	26	92	0	88	30	20	22	26	1.98
20806299--20806676	171	2.2	172	82	4	453	20	27	34	17	1.95
20806572--20808994	877	2.8	874	89	2	3601	25	23	25	25	2.00
20808497--20809504	510	2.0	510	90	1	1603	27	23	21	27	1.99
20809007--20811721	724	3.8	717	90	2	4047	26	23	23	26	2.00
20811695--20811747	26	2.0	26	85	0	70	28	22	20	28	1.99
20812572--20812624	26	2.0	26	88	0	79	28	20	20	30	1.98
20813471--20813523	26	2.0	26	100	0	106	26	20	26	26	1.99
20810970--20814436	881	3.9	888	85	3	4611	25	23	24	26	2.00
20814363--20814412	25	2.0	26	96	4	93	32	22	18	28	1.97
20815089--20815142	26	2.1	26	89	0	81	29	22	22	25	1.99
20814389--20821468	866	8.0	863	77	10	5257	25	23	24	25	2.00
20816837--20816915	26	3.0	26	96	0	140	27	21	24	26	1.99
20820345--20820397	26	2.0	26	92	0	88	28	18	24	28	1.98
20817519--20821468	861	4.5	855	80	9	3594	24	24	25	25	2.00
20821810--20821862	26	2.0	26	96	0	97	26	18	26	28	1.98
20823519--20823568	26	1.9	26	91	0	82	34	22	22	22	1.97
20824400--20824450	26	2.0	26	100	0	102	27	19	25	27	1.99
20825307--20825357	26	2.0	26	88	0	75	31	15	27	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20823430--20829113	967	6.3	903	80	7	6064	25	24	24	25	2.00
20826272--20826324	26	2.0	26	100	0	106	26	20	26	26	1.99
20828052--20828104	26	2.0	26	100	0	106	26	20	26	26	1.99
20825830--20829135	876	3.7	884	84	4	4185	25	24	24	25	2.00
20828955--20829313	179	2.0	179	87	2	524	23	28	27	21	1.99
20830014--20830066	26	2.0	26	88	0	79	30	18	22	28	1.98
20830893--20830945	26	2.0	26	100	0	106	26	20	26	26	1.99
20831794--20831846	26	2.0	26	96	0	97	28	15	26	30	1.96
20829134--20832700	898	4.0	891	86	3	4735	25	23	24	26	2.00
20833423--20833470	25	1.9	25	95	0	87	25	18	29	27	1.98
20834320--20834372	26	2.0	26	100	0	106	26	20	26	26	1.99
20832683--20836137	912	3.8	903	86	2	4635	25	23	24	25	2.00
20837652--20837704	26	2.0	26	92	0	88	26	18	24	30	1.98
20839329--20839380	26	2.0	26	96	0	95	26	13	26	32	1.94
20839463--20841927	865	2.9	837	85	5	3167	25	24	23	26	2.00
20842063--20842115	26	2.0	26	96	0	97	28	20	24	26	1.99
20843860--20843938	26	3.0	26	98	0	149	26	18	26	27	1.98
20842063--20844497	917	2.7	914	83	6	3149	26	22	24	26	2.00
20844676--20844728	26	2.0	26	92	0	88	28	18	24	28	1.98
20846336--20846414	26	3.0	26	98	0	149	26	22	24	26	2.00
20848065--20848117	26	2.0	26	92	7	90	28	20	24	26	1.99
20848959--20849011	26	2.0	26	96	0	97	26	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20846535--20849933	890	3.8	887	87	3	4677	25	23	25	25	2.00
20849849--20849901	26	2.0	26	88	0	79	24	18	24	32	1.97
20850593--20850645	26	2.0	26	92	0	88	28	20	26	24	1.99
20851693--20851746	27	2.0	27	85	0	72	12	24	57	5	1.57
20852390--20852442	26	2.0	26	88	0	79	28	18	24	28	1.98
20853287--20853336	26	1.9	26	95	0	91	28	18	28	26	1.98
20849875--20856220	875	7.1	874	84	5	7239	25	24	25	25	2.00
20856365--20856416	26	2.0	26	96	0	95	26	17	26	28	1.97
20857269--20857321	26	2.0	26	96	0	97	26	18	28	26	1.98
20858173--20858225	26	2.0	26	88	0	79	26	18	24	30	1.98
20859066--20859144	26	3.0	26	100	0	158	26	20	26	26	1.99
20860880--20860932	26	2.0	26	85	0	70	30	24	20	24	1.99
20856309--20862898	900	7.3	896	85	4	8413	25	23	25	25	2.00
20864398--20864449	26	2.0	26	96	0	95	28	15	25	30	1.96
20862903--20868899	902	6.8	895	83	6	7215	25	23	24	26	2.00
20866182--20866234	26	2.0	26	89	7	81	26	15	26	32	1.95
20867025--20867077	26	2.0	26	85	0	70	26	18	22	32	1.97
20868811--20868863	26	2.0	26	96	0	97	28	15	24	32	1.95
20873937--20873989	26	2.0	26	88	0	79	26	20	24	28	1.99
20874834--20874886	26	2.0	26	92	0	88	26	20	24	28	1.99
20869551--20880289	884	12.0	887	85	4	13101	25	23	24	25	2.00
20876620--20876675	26	2.2	26	93	0	94	28	17	23	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20877518--20877570	26	2.0	26	92	0	88	28	22	24	24	2.00
20878418--20878470	26	2.0	26	92	0	88	28	18	24	28	1.98
20879325--20879377	26	2.0	26	92	0	88	30	16	22	30	1.96
20880224--20880276	26	2.0	26	100	0	106	26	20	26	26	1.99
20882488--20882540	26	2.0	26	92	0	88	26	18	24	30	1.98
20883386--20883438	26	2.0	26	96	0	97	26	22	24	26	2.00
20884282--20884334	26	2.0	26	96	0	97	26	18	26	28	1.98
20885180--20885229	26	1.9	26	92	8	84	34	22	20	24	1.97
20880305--20886098	889	6.5	894	85	4	7147	25	24	24	25	2.00
20886241--20886293	26	2.0	26	100	0	106	26	20	26	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195