genome.fa.s112.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  96  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17480940--17480989	25	2.0	26	92	4	84	28	22	20	30	1.98
17477920--17484155	870	7.1	864	82	7	5891	26	24	23	25	2.00
17481808--17481859	25	2.0	26	89	10	81	30	25	17	26	1.97
17481833--17484155	865	2.7	860	86	3	3153	27	23	23	25	2.00
17485006--17485058	26	2.0	26	96	0	97	26	24	20	28	1.99
17485898--17485950	26	2.0	26	96	0	97	28	26	18	26	1.98
17484154--17488517	891	4.9	889	82	5	5099	25	24	23	25	2.00
17486800--17486852	26	2.0	26	92	0	88	30	26	18	24	1.98
17487677--17487702	13	2.0	13	100	0	52	23	30	15	30	1.95
17489296--17489348	26	2.0	26	92	7	90	30	26	16	26	1.97
17490194--17490246	26	2.0	26	89	7	81	30	24	16	28	1.97
17490905--17490957	26	2.0	26	96	0	97	26	24	22	26	2.00
17491811--17491860	26	1.9	26	95	0	91	24	24	22	30	1.99
17493054--17493106	26	2.0	26	92	0	88	26	22	22	28	1.99
17493953--17494002	26	1.9	26	91	0	82	26	24	20	30	1.98
17494695--17495042	159	2.2	159	85	0	471	21	29	28	20	1.98
17495016--17495073	26	2.2	26	96	0	107	29	27	17	25	1.97
17495176--17495228	26	2.0	26	88	0	79	26	20	20	32	1.98
17494928--17495228	161	1.9	161	88	2	462	19	29	26	23	1.98
17496076--17496127	26	2.0	26	96	0	95	26	25	19	28	1.98
17495916--17496335	185	2.3	185	85	0	545	23	29	25	21	1.99
17497150--17497202	26	2.0	26	96	0	97	28	24	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17496101--17499754	905	4.1	902	87	2	5028	25	24	23	25	2.00
17500568--17500624	26	2.2	26	90	0	87	31	19	21	28	1.97
17501438--17501490	26	2.0	26	92	0	88	30	24	18	26	1.98
17503196--17503248	26	2.0	26	96	0	97	26	28	20	24	1.99
17505860--17505912	26	2.0	26	96	0	97	28	26	18	26	1.98
17504080--17518105	899	15.8	898	83	6	16348	25	24	23	25	2.00
17509355--17509404	26	1.9	26	87	0	73	24	22	20	34	1.97
17512012--17512063	26	2.0	25	85	3	68	25	21	21	32	1.98
17513769--17513840	26	2.8	26	95	0	126	30	23	18	27	1.97
17514680--17514731	26	2.0	26	85	3	70	28	23	19	28	1.98
17517327--17518738	710	2.0	712	88	1	2129	27	23	23	26	2.00
17520697--17520749	26	2.0	26	100	0	106	26	26	20	26	1.99
17518934--17524153	904	5.8	902	87	2	7085	25	24	24	25	2.00
17525029--17525081	26	2.0	26	88	0	79	26	24	22	26	2.00
17524161--17533365	899	10.4	872	84	4	10575	25	24	23	25	2.00
17529395--17529447	26	2.0	26	88	0	79	28	22	20	28	1.99
17530291--17530343	26	2.0	26	96	0	97	28	26	18	26	1.98
17531193--17531242	26	1.9	26	92	8	84	24	28	20	28	1.99
17532989--17533041	26	2.0	26	92	0	88	24	28	20	26	1.99
17534664--17534716	26	2.0	26	88	0	79	30	22	18	28	1.98
17535562--17535614	26	2.0	26	88	0	79	26	22	20	30	1.98
17533787--17540045	903	6.8	896	75	10	5144	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17536591--17536643	26	2.0	26	92	0	88	26	22	20	30	1.98
17537474--17537526	26	2.0	26	92	0	88	28	24	18	28	1.98
17535828--17540050	903	4.7	888	85	4	5355	26	24	23	25	2.00
17538366--17538418	26	2.0	26	100	0	106	26	26	20	26	1.99
17539269--17539321	26	2.0	26	92	0	88	28	24	18	28	1.98
17540940--17540992	26	2.0	26	96	0	97	26	24	20	28	1.99
17541848--17541897	26	1.9	26	91	0	82	26	24	20	30	1.98
17540241--17550953	904	12.0	903	85	3	13208	25	25	23	25	2.00
17545372--17545424	26	2.0	26	100	0	106	26	26	20	26	1.99
17546259--17546311	26	2.0	26	92	0	88	26	22	22	28	1.99
17547160--17547212	26	2.0	26	100	0	106	26	26	20	26	1.99
17548066--17548115	25	2.0	26	96	4	93	28	24	20	28	1.99
17550782--17550833	26	2.0	26	92	0	86	26	23	19	30	1.98
17552433--17552485	26	2.0	26	96	0	97	32	26	15	26	1.95
17553328--17553377	26	1.9	26	100	0	100	24	28	20	28	1.99
17554228--17554280	26	2.0	26	100	0	106	26	26	20	26	1.99
17550951--17555026	901	4.5	902	85	4	5309	26	24	23	25	2.00
17554971--17558081	902	3.5	891	85	5	3989	25	24	24	25	2.00
17559321--17559373	26	2.0	26	92	0	88	28	24	18	28	1.98
17558079--17561823	904	4.2	900	86	3	4957	25	24	23	25	2.00
17560228--17560279	26	2.0	26	92	0	86	30	25	17	26	1.97
17561133--17561185	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17562605--17562655	26	2.0	26	92	0	84	29	23	17	29	1.97
17563313--17563687	159	2.4	159	81	3	425	20	28	27	23	1.99
17563663--17563713	26	2.0	26	92	0	84	29	23	17	29	1.97
17564565--17564617	26	2.0	26	88	0	79	28	26	20	24	1.99
17563472--17568078	904	5.1	900	84	3	5787	25	24	23	25	2.00
17566357--17566409	26	2.0	26	85	0	70	26	22	16	33	1.96
17567253--17567305	26	2.0	26	96	0	97	26	24	20	28	1.99
17568544--17568596	26	2.0	26	85	0	70	28	20	20	30	1.98
17569443--17569495	26	2.0	26	85	0	70	28	20	20	30	1.98
17568493--17572853	880	4.9	886	84	6	5260	26	24	23	25	2.00
17568560--17572853	888	4.9	874	83	7	4938	26	24	23	25	2.00
17572827--17572905	26	3.0	26	98	0	149	26	25	21	26	1.99
17573757--17573809	26	2.0	26	100	0	106	26	26	20	26	1.99
17572879--17576748	904	4.4	860	84	5	4684	25	25	24	25	2.00
17578496--17578858	159	2.3	159	83	2	417	22	26	26	24	2.00
17578832--17578885	26	2.1	26	92	0	90	27	22	18	31	1.97
17579587--17579639	26	2.0	26	100	0	106	26	26	20	26	1.99
17580483--17580535	26	2.0	26	96	0	97	26	24	20	28	1.99
17581376--17581428	26	2.0	26	96	0	97	28	26	18	26	1.98
17583175--17583227	26	2.0	26	96	0	97	26	24	22	26	2.00
17577802--17584448	896	7.4	897	83	4	8079	25	24	24	25	2.00
17584071--17584123	26	2.0	26	92	0	88	28	28	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17584862--17584913	26	2.0	26	100	0	104	26	26	19	26	1.99
17585307--17585683	159	2.4	157	87	2	513	18	29	29	22	1.97
17585660--17585709	26	1.9	26	100	0	100	24	26	22	28	1.99
17587458--17587510	26	2.0	26	96	0	97	30	24	16	28	1.97
17588231--17588283	26	2.0	26	92	0	88	30	26	16	26	1.97
17589029--17589078	26	1.9	26	95	0	91	28	24	18	30	1.97
17589919--17589971	26	2.0	26	96	0	97	28	24	20	26	1.99
17591722--17591774	26	2.0	26	92	0	88	28	24	18	28	1.98
17588954--17593587	901	5.1	902	89	2	6312	25	24	24	25	2.00
17592623--17592675	26	2.0	26	96	0	97	28	22	18	30	1.98
17593527--17593579	26	2.0	26	92	0	88	28	24	18	28	1.98
17595274--17595324	25	2.0	25	88	7	77	29	23	19	27	1.98
17594605--17612183	902	19.6	897	86	4	21860	25	24	23	25	2.00
17597078--17597130	26	2.0	26	92	0	88	28	24	18	28	1.98
17597980--17598032	26	2.0	26	96	0	97	28	22	18	30	1.98
17598884--17598936	26	2.0	26	92	0	88	32	24	15	28	1.95
17599786--17599837	26	2.0	26	88	7	79	32	26	13	26	1.94
17600681--17600733	26	2.0	26	85	0	70	28	26	20	24	1.99
17601577--17601629	26	2.0	26	96	0	97	28	26	18	26	1.98
17602470--17602522	26	2.0	26	100	0	106	26	26	20	26	1.99
17603357--17603408	26	2.0	26	96	0	95	28	21	19	30	1.97
17605135--17605185	26	2.0	26	92	0	84	29	23	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17606918--17606970	26	2.0	26	92	0	88	26	22	24	26	2.00
17609578--17609656	26	3.0	25	92	3	122	30	25	16	27	1.97
17610503--17610555	26	2.0	26	92	0	88	30	26	16	26	1.97
17611505--17611536	14	2.3	14	94	0	55	15	34	34	15	1.90
17615569--17615621	26	2.0	26	88	0	79	28	26	18	26	1.98
17616033--17616085	26	2.0	26	92	0	88	28	24	20	26	1.99
17615164--17616088	461	2.0	461	86	2	1284	26	26	22	24	2.00
17617861--17617913	26	2.0	26	96	0	97	26	24	20	28	1.99
17620531--17620583	26	2.0	26	100	0	106	26	26	20	26	1.99
17615624--17622681	893	7.9	883	80	6	7390	25	24	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195