genome.fa.s112.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  184  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31893035--31893060	7	3.7	7	100	0	52	26	0	0	73	0.84
31898823--31898890	22	3.1	21	87	4	82	55	0	0	44	0.99
31898841--31898892	16	3.6	14	75	10	52	59	0	0	40	0.97
31898864--31898905	8	5.1	8	88	5	66	59	0	0	40	0.97
31905452--31905506	8	6.6	8	89	6	83	74	0	14	10	1.07
31905452--31905506	17	3.3	16	90	7	83	74	0	14	10	1.07
31905450--31905515	25	2.6	25	90	2	96	71	0	16	12	1.15
31905459--31905518	16	3.6	17	82	11	70	68	0	16	15	1.22
31905479--31905532	16	3.3	17	84	7	58	64	1	16	16	1.37
31906725--31906850	24	5.5	22	82	8	130	41	5	14	38	1.69
31907267--31907310	16	2.8	16	82	6	54	25	13	15	45	1.83
31907296--31907360	34	1.9	34	84	3	87	41	13	6	38	1.70
31907294--31907366	33	2.2	33	80	4	85	38	13	8	39	1.75
31907385--31907433	17	2.9	17	76	11	64	28	6	16	48	1.69
31907435--31907469	18	1.9	18	100	0	70	45	17	5	31	1.71
31907435--31907491	18	3.2	18	84	0	69	43	15	8	31	1.78
31910702--31910886	95	2.0	94	87	5	266	51	8	3	36	1.48
31911223--31911267	2	22.5	2	100	0	90	51	0	48	0	1.00
31912658--31912689	2	16.0	2	100	0	64	50	0	0	50	1.00
31919713--31919804	38	2.4	37	84	10	107	50	1	1	47	1.15
31919725--31919805	32	2.6	30	84	15	94	49	1	1	48	1.17
31929315--31929393	39	2.0	39	85	4	106	41	15	8	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31955446--31955477	15	2.1	15	94	0	55	53	0	3	43	1.16
31955590--31955638	21	2.2	22	78	7	55	42	0	4	53	1.20
31962651--31962676	12	2.2	12	100	0	52	42	15	15	26	1.87
31962905--31962949	15	2.9	15	83	6	54	60	0	2	37	1.09
31962906--31962983	40	2.0	40	84	5	104	60	0	1	38	1.05
31963003--31963047	12	3.8	12	75	0	54	55	0	0	44	0.99
31963709--31963739	13	2.4	13	88	0	53	61	0	0	38	0.96
31969196--31969382	99	1.9	100	90	1	304	27	7	18	46	1.75
31973529--31973557	2	14.5	2	100	0	58	48	0	0	51	1.00
31974510--31974569	18	3.3	18	72	19	52	56	1	0	41	1.09
31974521--31974568	20	2.6	18	78	15	53	56	0	0	43	0.99
31974545--31974619	29	2.5	29	84	6	87	45	4	0	50	1.20
31976001--31976047	20	2.4	19	85	3	58	68	0	23	8	1.17
31976125--31976164	14	2.9	15	85	10	50	65	0	0	35	0.93
31976188--31976246	11	5.4	11	74	6	57	57	0	0	42	0.98
31976187--31976246	22	2.7	22	82	12	70	58	0	0	41	0.98
31978983--31979051	21	3.3	21	73	15	70	23	11	13	52	1.72
31978972--31979053	42	2.0	41	90	2	128	23	12	13	51	1.74
31981481--31981521	16	2.6	16	92	3	66	46	0	0	53	1.00
31981488--31981534	24	2.0	23	87	4	67	44	0	0	55	0.99
31981981--31982014	17	2.0	17	100	0	68	29	17	35	17	1.93
31991020--31991072	21	2.5	20	70	8	52	49	0	7	43	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31991389--31991417	13	2.1	14	93	6	51	51	0	0	48	1.00
32003194--32003382	92	2.1	92	95	2	344	26	21	11	39	1.88
32013123--32013209	30	2.9	29	77	17	81	57	2	3	36	1.28
32014932--32014979	23	2.0	24	84	4	62	72	10	16	0	1.10
32017826--32017870	3	15.0	3	85	0	63	62	2	4	31	1.27
32017826--32017870	12	3.8	12	90	0	72	62	2	4	31	1.27
32026430--32026455	13	2.0	13	100	0	52	38	0	46	15	1.46
32026576--32026618	2	21.5	2	100	0	86	51	0	0	48	1.00
32030434--32030467	2	17.0	2	100	0	68	50	0	0	50	1.00
32031302--32031346	2	22.5	2	95	0	81	51	0	0	48	1.00
32035237--32035262	1	26.0	1	100	0	52	100	0	0	0	0.00
32037269--32037300	16	1.9	17	93	6	57	9	9	0	81	0.88
32037407--32037449	23	1.9	23	85	4	61	46	4	4	44	1.45
32040129--32040185	26	2.2	26	77	0	60	26	3	3	66	1.24
32040666--32040727	21	2.9	21	90	9	90	48	0	0	51	1.00
32040713--32040753	8	5.2	8	85	2	57	58	0	0	41	0.98
32040717--32040768	26	2.1	24	85	7	68	59	0	0	40	0.97
32040760--32040786	13	2.1	13	100	0	54	48	0	0	51	1.00
32045104--32045246	72	2.0	72	82	8	175	36	7	4	51	1.52
32045059--32045308	134	1.9	132	82	11	314	34	10	5	49	1.60
32045161--32045313	59	2.6	59	84	13	190	37	8	5	47	1.58
32045193--32045313	60	2.1	58	89	7	183	37	9	5	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32046591--32046629	20	2.0	20	100	0	78	46	15	17	20	1.84
32047214--32047370	44	3.6	41	79	13	131	38	11	8	41	1.71
32047214--32047381	21	7.8	21	69	13	117	37	11	7	42	1.71
32047322--32047400	25	3.3	24	73	20	67	37	12	10	39	1.77
32047257--32047413	46	3.5	46	85	5	185	38	12	9	38	1.76
32047409--32047476	21	3.5	21	67	22	67	33	17	5	42	1.74
32047411--32047495	36	2.4	36	91	0	134	34	15	7	43	1.74
32048585--32048631	16	2.9	16	80	0	58	10	6	0	82	0.82
32048585--32048622	17	2.3	17	86	4	51	13	2	0	84	0.73
32048617--32048660	22	2.0	22	86	4	61	9	20	2	68	1.28
32052712--32052810	47	2.1	47	83	10	123	34	9	5	51	1.55
32052809--32052955	72	2.1	71	83	3	179	38	9	2	48	1.50
32052880--32053081	58	3.5	57	87	6	282	38	8	5	47	1.58
32053144--32053182	20	2.0	20	89	0	60	79	2	2	15	0.95
32053140--32053184	24	2.0	22	91	8	72	80	2	2	15	0.92
32054486--32054578	28	3.4	27	71	14	84	68	8	3	19	1.29
32054480--32054586	53	2.0	53	94	0	187	67	7	4	20	1.34
32054506--32054604	28	3.7	27	72	11	87	72	6	4	17	1.20
32055285--32055322	13	3.0	13	80	3	51	42	0	2	55	1.14
32061282--32061325	21	2.0	23	86	8	65	38	0	0	61	0.96
32061394--32061435	21	2.1	19	91	8	66	54	0	0	45	0.99
32065500--32065557	27	2.2	28	78	12	68	6	37	12	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32067171--32067275	29	3.5	28	74	15	86	28	0	4	65	1.19
32067171--32067272	30	3.4	29	81	6	96	29	0	4	64	1.20
32069003--32069034	15	2.0	17	88	11	50	43	6	25	25	1.77
32069385--32069450	32	2.1	32	85	5	89	21	3	6	69	1.24
32070507--32070546	21	1.9	21	84	0	53	42	7	7	42	1.61
32070529--32070667	21	6.4	21	66	20	65	48	7	2	40	1.47
32070451--32070687	11	21.8	10	67	17	93	47	8	3	40	1.51
32070633--32070687	21	2.6	22	80	11	62	56	7	1	34	1.38
32070995--32071093	49	2.0	49	98	0	189	46	4	5	44	1.44
32071016--32071094	26	3.2	26	61	23	60	45	3	6	44	1.47
32071650--32071682	16	2.1	16	94	5	59	78	0	0	21	0.75
32071760--32071836	28	2.7	28	76	11	75	75	3	6	14	1.15
32072811--32072846	18	1.9	18	88	5	54	77	2	16	2	1.00
32079455--32079513	25	2.4	25	81	13	68	52	0	0	47	1.00
32079732--32079789	21	2.8	21	75	0	62	41	10	0	48	1.37
32081221--32081256	2	18.0	2	100	0	72	50	0	0	50	1.00
32084235--32084274	2	20.0	2	100	0	80	50	0	0	50	1.00
32084521--32084553	2	16.5	2	100	0	66	0	51	0	48	1.00
32090296--32090688	195	2.0	195	99	0	777	30	27	19	23	1.98
32095147--32095275	65	2.0	65	98	0	249	48	12	3	35	1.59
32103652--32103688	2	18.5	2	88	0	56	48	2	2	45	1.30
32105858--32105898	16	2.6	17	81	11	52	58	7	9	24	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32112928--32112961	16	2.0	18	88	11	54	41	0	0	58	0.98
32124977--32125030	21	2.5	22	86	13	78	50	0	0	50	1.00
32124977--32125029	23	2.4	23	90	9	85	50	0	0	49	1.00
32124977--32125032	22	2.7	20	82	15	69	51	0	0	48	1.00
32125613--32126277	336	2.0	332	79	9	711	43	8	7	40	1.63
32126402--32126426	2	12.5	2	100	0	50	52	0	0	48	1.00
32126523--32126548	2	13.0	2	100	0	52	0	50	0	50	1.00
32127270--32127301	16	1.9	17	93	6	57	46	6	34	12	1.67
32127685--32127714	2	15.0	2	92	0	51	46	0	0	53	1.00
32128450--32128508	23	2.5	23	81	8	66	42	0	1	55	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195