genome.fa.s112.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  51  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10632513--10632579	33	2.1	32	83	10	84	49	4	4	41	1.43
10632659--10632702	18	2.4	18	84	3	52	59	9	0	31	1.29
10632823--10632861	20	2.0	20	90	5	62	43	5	7	43	1.55
10633132--10633186	28	2.0	28	82	7	67	36	3	1	58	1.26
10633306--10633348	18	2.4	19	84	11	63	20	0	9	69	1.15
10633466--10633551	39	2.2	39	81	8	95	34	3	4	56	1.37
10635210--10635239	10	2.9	10	95	5	51	13	6	0	80	0.91
10635266--10635443	62	2.9	60	80	10	191	49	7	8	34	1.62
10636304--10636367	18	3.4	19	85	8	69	6	17	1	75	1.09
10636710--10636798	46	1.9	47	82	11	112	42	1	1	55	1.14
10637101--10637133	13	2.5	13	85	14	50	18	3	0	78	0.87
10637476--10637516	20	2.0	21	86	9	59	46	2	0	51	1.14
10641208--10641238	9	3.3	9	95	4	53	87	0	3	9	0.66
10645491--10645625	66	2.0	66	95	0	243	22	22	13	42	1.88
10650694--10650724	1	31.0	1	93	0	53	0	96	3	0	0.21
10654205--10654271	24	2.9	21	78	13	62	34	14	1	49	1.53
10656248--10656316	34	2.0	34	83	5	86	34	15	8	40	1.79
10661569--10661600	17	1.9	16	93	6	55	15	0	3	81	0.82
10663983--10664022	20	2.0	20	85	5	53	32	5	2	60	1.32
10664076--10664119	23	1.9	23	86	9	63	47	4	2	45	1.35
10664377--10664418	11	3.8	11	93	0	75	21	0	28	50	1.49
10664376--10664418	22	2.0	22	100	0	86	23	0	27	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10664476--10664588	52	2.2	52	88	1	165	40	8	22	28	1.83
10667699--10667760	4	15.5	4	93	0	61	48	9	1	40	1.46
10671641--10671682	3	14.0	3	94	0	75	66	2	0	30	1.04
10671681--10671709	3	9.7	3	100	0	58	34	0	0	65	0.93
10672250--10672323	22	3.4	22	68	7	60	36	12	17	33	1.87
10672217--10672553	147	2.3	147	78	5	333	36	13	14	35	1.86
10672403--10672482	22	3.6	22	78	6	90	32	13	20	33	1.91
10672451--10672962	104	4.9	103	79	2	504	37	14	12	35	1.84
10672451--10672964	208	2.5	206	79	5	559	37	14	12	35	1.84
10673023--10673197	22	7.9	22	74	8	113	24	16	25	33	1.96
10673118--10673227	22	5.0	21	78	11	96	22	20	27	30	1.98
10673565--10673625	26	2.3	26	82	0	68	31	9	21	37	1.86
10673619--10673740	41	3.0	41	80	2	129	31	13	19	35	1.91
10674435--10675496	530	2.0	529	97	0	2000	30	13	12	43	1.81
10677969--10677996	12	2.3	12	100	0	56	35	25	10	28	1.89
10681181--10681297	35	3.3	35	73	11	105	30	9	23	35	1.87
10683212--10683243	3	10.3	3	93	6	55	65	3	0	31	1.08
10690129--10690581	125	3.7	123	77	6	397	34	15	16	33	1.90
10690465--10690509	22	2.0	22	86	0	63	33	17	20	28	1.95
10690630--10690809	41	4.4	41	80	8	163	39	12	15	32	1.85
10691119--10691173	26	2.1	26	82	0	65	32	21	10	34	1.89
10692742--10692783	7	6.1	7	83	10	52	9	19	0	71	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10692745--10692786	18	2.3	19	88	12	61	7	16	0	76	1.00
10692745--10692792	18	2.6	18	80	9	53	6	14	2	77	1.06
10693241--10693328	14	6.4	14	72	18	60	2	19	1	77	0.94
10694005--10694050	13	3.5	13	87	3	65	0	15	0	84	0.62
10710753--10710795	19	2.3	18	78	17	52	44	2	0	53	1.13
10710756--10710799	20	2.2	20	92	4	72	47	2	0	50	1.13
10717054--10717109	3	18.7	3	88	0	67	0	25	32	42	1.55
10718096--10718122	11	2.5	11	100	0	54	51	0	0	48	1.00
10718699--10718746	20	2.5	19	80	12	53	62	0	2	35	1.07
10719419--10719450	16	1.9	17	93	6	57	15	3	6	75	1.14
10720688--10720729	14	3.1	14	90	10	61	33	0	0	66	0.92
10722403--10722497	46	2.1	46	90	4	147	33	13	14	37	1.86
10725092--10725146	17	3.1	17	75	10	56	41	3	12	41	1.60
10725095--10725166	36	2.0	36	86	0	99	38	1	13	45	1.53
10725665--10725771	50	2.1	51	87	3	155	34	3	10	51	1.54
10727254--10727284	16	1.9	16	93	0	53	25	6	9	58	1.54
10727994--10728018	2	12.5	2	100	0	50	48	0	0	52	1.00
10730995--10731045	25	2.0	25	88	7	77	41	7	9	41	1.67
10731006--10731056	25	2.1	26	82	13	65	39	11	7	41	1.71
10733476--10733514	18	2.2	18	90	0	60	48	10	12	28	1.74
10733603--10733639	19	1.9	19	88	0	56	35	0	27	37	1.57
10733630--10733703	19	3.9	19	83	3	96	14	0	47	37	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10733615--10733694	38	2.1	38	84	9	101	21	0	41	37	1.53
10733629--10733702	38	1.9	38	89	5	114	16	0	45	37	1.47
10733629--10733719	38	2.4	38	81	7	105	16	0	42	40	1.48
10733736--10733807	7	10.4	7	70	19	53	25	0	27	47	1.52
10733751--10733821	21	3.4	21	81	11	67	25	1	26	46	1.61
10733736--10733821	14	6.2	14	74	14	72	25	1	26	46	1.60
10733771--10733821	20	2.5	21	87	3	77	25	1	25	47	1.63
10735964--10736007	18	2.4	18	76	0	52	54	2	9	34	1.44
10742451--10742517	23	2.9	22	81	16	66	52	0	0	47	1.00
10742468--10742511	12	3.8	12	82	11	56	54	0	0	45	0.99
10743372--10743434	13	4.9	13	74	3	56	79	3	12	4	1.01
10743511--10743567	30	2.0	29	83	13	73	77	1	10	10	1.07
10745260--10745310	17	3.2	17	73	18	56	37	3	0	58	1.16
10745362--10745417	25	2.3	24	82	14	71	41	3	0	55	1.17
10745376--10745425	24	2.0	24	88	11	75	42	0	0	58	0.98
10745673--10745781	58	1.9	56	83	7	139	45	11	2	40	1.54
10746590--10746727	61	2.3	61	86	5	181	41	13	2	43	1.55
10746645--10746694	26	1.9	26	83	0	64	44	12	2	42	1.53
10747427--10747478	27	1.9	27	84	7	70	63	1	0	34	1.06
10747435--10747473	20	2.0	20	89	0	60	69	0	0	30	0.89
10752448--10752482	17	2.1	17	94	0	61	57	11	0	31	1.34
10760862--10760891	7	4.3	7	100	0	60	16	30	0	53	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10761830--10761861	14	2.2	15	94	5	57	12	37	18	31	1.88
10777513--10777562	25	2.0	25	96	0	91	34	12	18	36	1.87
10784927--10784963	2	18.5	2	100	0	74	48	0	0	51	1.00
10785993--10786087	30	3.2	30	73	18	90	44	2	2	51	1.25
10786301--10786356	24	2.4	22	77	16	58	42	0	1	55	1.10
10786389--10786430	22	1.9	22	85	0	57	47	2	0	50	1.14
10786388--10786445	22	2.7	22	78	2	55	50	1	0	48	1.11
10790323--10790367	19	2.2	21	92	7	76	48	0	0	51	1.00
10790323--10790381	18	3.1	19	87	7	75	49	0	0	50	1.00
10790337--10790390	18	2.9	18	86	8	65	51	0	0	48	1.00
10804780--10804833	26	2.2	24	86	6	72	51	1	0	46	1.11
10805942--10806263	103	3.1	103	85	0	421	37	11	8	41	1.72
10818572--10818643	19	3.9	18	84	12	67	48	0	0	51	1.00
10818583--10818640	19	3.1	19	87	7	82	50	0	0	50	1.00
10822080--10822118	13	2.9	13	85	7	51	58	0	0	41	0.98
10822159--10822190	2	16.0	2	100	0	64	50	0	0	50	1.00
10822619--10822660	22	1.9	22	85	0	57	50	0	2	47	1.14
10822693--10822738	24	2.0	22	87	8	65	56	0	0	43	0.99
10822693--10822748	24	2.4	22	77	16	58	55	1	0	42	1.10
10822948--10823055	28	3.7	29	74	16	91	50	2	1	44	1.27
10833425--10833472	20	2.3	20	79	10	53	25	10	14	50	1.74
10836035--10836080	16	2.8	16	83	3	56	78	4	8	8	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10843667--10843702	3	12.0	3	93	0	63	69	0	0	30	0.89
10843660--10843698	9	4.2	9	93	3	51	74	0	0	25	0.82
10847108--10847180	32	2.4	32	84	8	91	34	5	8	52	1.55
10847252--10847288	9	4.0	9	86	6	56	54	0	2	43	1.14
10851410--10851461	22	2.3	23	80	10	61	17	34	3	44	1.67
10851419--10851460	22	1.9	22	90	0	66	19	30	4	45	1.71
10852325--10852356	16	1.9	17	93	6	57	50	0	0	50	1.00
10854455--10854514	24	2.6	22	75	17	59	43	1	3	51	1.28
10854655--10854695	18	2.3	18	87	4	57	75	4	0	19	0.98
10855188--10855232	22	2.0	22	82	0	54	35	15	17	31	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195