genome.fa.s112.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  56  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11647014--11647073	26	2.3	26	80	8	70	20	3	5	71	1.19
11647031--11647096	26	2.5	26	80	11	82	27	4	4	63	1.33
11647086--11647111	3	8.7	3	100	0	52	30	0	0	69	0.89
11647437--11647505	10	7.4	9	75	9	52	5	0	13	81	0.87
11647458--11647500	16	2.8	15	89	10	61	4	0	16	79	0.90
11647519--11647573	15	3.7	15	85	7	69	9	10	3	76	1.13
11647771--11647833	21	3.0	21	88	6	83	20	25	23	30	1.99
11647935--11648180	32	7.8	32	70	11	132	29	16	17	36	1.92
11647844--11648074	93	2.5	93	80	3	259	31	16	19	32	1.94
11648408--11648449	22	1.9	22	90	0	66	26	16	26	30	1.97
11648990--11649022	13	2.5	13	95	0	57	12	12	24	51	1.73
11649648--11649702	22	2.4	24	84	9	71	43	1	1	52	1.22
11649655--11649703	22	2.2	22	92	0	80	44	2	2	51	1.24
11658859--11658897	20	1.9	21	89	5	62	41	2	0	56	1.13
11658930--11658966	19	1.9	19	89	10	58	24	0	2	72	0.97
11658932--11658960	12	2.3	13	94	5	51	20	0	3	75	0.94
11658929--11658962	13	2.6	14	86	13	54	26	0	2	70	1.01
11664183--11664214	9	3.6	9	91	0	55	37	0	31	31	1.58
11664462--11664515	18	3.1	17	79	10	56	48	3	0	48	1.19
11666039--11666088	21	2.4	21	75	0	55	24	22	22	32	1.98
11666705--11666735	12	2.6	12	94	0	53	61	22	3	12	1.46
11669247--11669297	23	2.3	22	86	10	68	21	0	3	74	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11669214--11669297	35	2.3	35	79	15	91	19	1	4	75	1.05
11670020--11670073	23	2.3	23	100	0	108	38	11	3	46	1.57
11671933--11671960	2	14.0	2	100	0	56	50	0	0	50	1.00
11676227--11676256	3	9.7	3	92	7	51	30	3	0	66	1.07
11677341--11677379	18	2.2	17	86	13	53	71	0	10	17	1.12
11683963--11684000	18	2.3	17	86	13	53	63	7	21	7	1.47
11689746--11689868	49	2.5	49	82	2	138	28	13	21	37	1.90
11690161--11690205	10	4.4	10	88	2	63	0	15	0	84	0.62
11691380--11691419	19	2.1	19	100	0	80	5	25	20	50	1.68
11692364--11692394	2	15.5	2	100	0	62	51	0	0	48	1.00
11692659--11692726	10	6.8	10	73	17	61	52	2	1	42	1.25
11692659--11692705	19	2.5	18	89	6	67	53	4	0	42	1.20
11692869--11692911	17	2.4	18	88	3	61	67	9	0	23	1.19
11692864--11692911	18	2.7	16	84	15	51	62	8	2	27	1.35
11693139--11693196	18	3.2	19	83	13	77	34	0	5	60	1.19
11693139--11693196	9	6.3	9	76	9	55	34	0	5	60	1.19
11693222--11693314	45	2.1	45	81	15	106	33	4	2	60	1.28
11693268--11693369	53	1.9	53	80	11	120	27	1	5	64	1.27
11693338--11693387	25	2.0	26	88	7	77	30	2	2	66	1.14
11693370--11693407	19	2.0	19	89	0	58	47	5	0	47	1.24
11693467--11693508	18	2.3	18	91	4	66	23	2	7	66	1.28
11693459--11693550	10	9.5	10	78	11	61	31	2	6	59	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11693429--11693540	19	5.9	18	73	14	84	32	1	5	60	1.29
11694079--11694128	21	2.3	22	82	6	66	52	4	0	44	1.20
11694084--11694159	20	3.8	20	70	18	59	55	3	0	40	1.18
11694210--11694247	18	2.2	18	85	4	51	63	7	2	26	1.35
11694198--11694289	29	3.2	29	76	14	86	61	7	3	27	1.38
11694301--11694353	21	2.5	22	84	3	72	66	3	0	30	1.10
11694440--11694532	30	3.1	29	76	11	73	24	3	4	67	1.23
11694807--11694871	10	6.6	10	70	10	53	38	3	1	56	1.24
11694783--11694849	19	3.7	17	74	8	53	35	2	1	59	1.22
11694814--11694849	19	1.9	18	88	5	54	41	2	2	52	1.30
11694784--11694874	17	4.8	19	70	17	55	39	3	1	56	1.23
11696534--11696572	15	2.6	15	91	0	60	53	0	0	46	1.00
11696561--11696616	27	2.0	28	90	10	89	33	0	0	66	0.92
11696564--11696624	27	2.2	27	85	8	79	39	0	0	60	0.97
11697172--11697218	9	4.7	10	80	17	53	38	6	2	53	1.39
11697505--11697537	16	1.9	18	88	11	52	33	3	0	63	1.10
11698218--11698260	13	3.1	15	77	19	56	55	30	6	6	1.53
11704106--11704136	15	2.1	15	93	0	53	58	0	0	41	0.98
11704740--11704786	24	2.0	24	86	0	67	31	6	42	19	1.76
11704841--11704892	26	2.1	24	89	7	77	42	9	11	36	1.74
11705445--11705507	23	2.7	23	80	2	81	42	1	4	50	1.32
11705993--11706034	14	2.7	15	82	14	50	50	2	0	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11706039--11706112	27	2.6	29	79	14	82	47	0	0	52	1.00
11706499--11706539	22	1.9	21	85	5	55	51	7	0	41	1.30
11707960--11708027	31	2.2	31	84	5	84	30	5	7	55	1.51
11707960--11708045	30	2.8	30	82	3	82	29	8	8	54	1.58
11713243--11713290	8	5.8	8	83	11	53	77	0	12	10	1.00
11713243--11713281	9	4.3	9	90	9	62	76	0	12	10	1.01
11713243--11713299	27	2.2	26	87	3	78	73	0	14	12	1.09
11713584--11713644	29	2.1	29	84	6	79	72	0	16	11	1.13
11713770--11713865	3	34.3	3	80	14	116	34	1	2	62	1.14
11713717--11713861	39	3.9	37	80	9	152	32	3	4	59	1.35
11713768--11713865	39	2.5	39	95	1	162	33	2	2	62	1.18
11713775--11713876	33	3.1	33	88	5	136	33	2	2	60	1.26
11714247--11714292	20	2.3	20	88	7	67	15	2	23	58	1.48
11714253--11714309	21	2.7	21	75	8	53	21	5	24	49	1.70
11714704--11714743	7	5.6	7	86	13	55	22	0	0	77	0.77
11714704--11714753	14	3.3	15	83	13	59	24	0	0	76	0.80
11714704--11714759	23	2.5	22	83	13	69	21	0	1	76	0.87
11714702--11714762	16	3.8	17	76	22	53	19	0	1	78	0.83
11717697--11718135	86	5.1	86	80	4	422	31	16	12	39	1.85
11717830--11717866	17	2.2	17	90	0	56	35	18	16	29	1.93
11717697--11718123	172	2.5	171	83	2	509	32	16	11	39	1.85
11717995--11718037	16	2.6	17	77	7	52	25	18	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11718065--11718110	17	2.6	18	75	6	58	39	13	8	39	1.75
11718065--11718136	35	2.1	35	86	5	101	34	15	9	40	1.80
11719739--11719830	6	14.3	6	70	20	62	20	1	1	77	0.90
11719733--11719830	5	18.6	5	74	22	69	20	2	1	76	0.95
11719726--11719830	13	8.2	12	72	21	72	19	2	0	77	0.95
11719732--11719830	18	5.5	17	77	13	76	20	2	1	76	0.94
11719738--11719824	9	10.0	9	72	18	69	21	1	1	75	0.93
11722854--11722884	16	1.9	16	100	0	62	32	12	19	35	1.90
11723481--11723531	16	3.1	16	81	15	52	80	5	1	11	0.97
11724300--11724334	17	2.1	17	89	5	54	25	0	0	74	0.82
11725041--11725102	30	2.1	29	82	11	74	32	8	8	51	1.60
11727658--11727682	3	8.3	3	100	0	50	68	0	0	32	0.90
11727697--11727731	3	11.7	3	100	0	70	65	0	34	0	0.93
11728200--11728224	8	3.1	8	100	0	50	52	12	0	36	1.39
11728244--11728287	2	22.0	2	100	0	88	50	0	50	0	1.00
11730471--11730502	6	5.5	6	92	7	57	0	12	0	87	0.54
11730471--11730504	11	3.0	11	95	4	59	0	11	0	88	0.52
11731637--11731687	9	5.7	9	80	13	52	78	1	17	1	0.94
11732218--11732242	2	12.5	2	100	0	50	52	0	0	48	1.00
11733208--11733250	12	3.4	12	75	12	50	30	6	13	48	1.69
11738298--11738547	80	3.1	78	84	5	322	43	25	9	22	1.82
11739593--11739635	22	2.0	22	90	0	68	32	4	20	41	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11739469--11739755	146	2.0	145	91	0	466	40	9	13	36	1.77
11747681--11747745	33	2.0	33	82	11	80	36	16	13	32	1.89
11749405--11749432	2	14.0	2	100	0	56	50	0	0	50	1.00
11749714--11749770	27	2.1	28	90	3	89	24	7	31	36	1.82
11751576--11751615	13	3.3	13	80	13	50	70	7	0	22	1.12
11751622--11751655	10	3.3	10	88	8	50	85	2	2	8	0.80
11751941--11752006	31	2.2	31	86	2	89	51	10	9	28	1.67
11752728--11752925	43	4.6	42	77	13	208	44	13	10	31	1.77
11754780--11754815	13	2.7	14	87	12	58	16	8	19	55	1.66
11756148--11756543	139	2.8	138	87	2	542	25	10	12	51	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195