genome.fa.s112.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  19  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4367910--4368389	59	8.1	58	79	9	375	47	5	9	37	1.60
4367991--4368385	118	3.3	119	82	7	462	48	5	9	36	1.59
4369108--4369153	25	1.9	24	82	8	58	43	8	4	43	1.55
4372504--4372537	16	2.1	17	88	5	52	47	0	0	52	1.00
4377427--4377601	84	2.0	87	91	6	284	44	8	15	32	1.77
4386462--4386487	2	13.0	2	100	0	52	50	0	0	50	1.00
4396252--4396298	23	2.1	22	84	11	60	51	0	0	48	1.00
4396276--4396319	20	2.3	19	80	4	52	52	2	0	45	1.13
4396317--4396347	2	15.5	2	93	0	53	54	0	0	45	0.99
4398679--4398723	2	22.5	2	95	0	81	2	46	0	51	1.13
4403877--4403904	2	14.0	2	100	0	56	50	50	0	0	1.00
4406876--4406906	2	15.5	2	93	0	53	48	3	0	48	1.17
4408451--4408502	25	2.0	26	92	3	88	51	26	1	19	1.57
4409209--4409250	21	2.0	21	85	0	57	66	11	4	16	1.40
4409371--4409419	16	3.1	16	75	21	57	65	14	10	10	1.47
4414802--4414835	18	2.0	17	88	11	52	70	0	2	26	1.01
4418707--4418779	36	1.9	37	86	8	103	32	10	28	27	1.91
4431943--4431997	18	3.1	17	79	7	65	63	1	1	32	1.15
4432383--4432607	111	2.0	111	87	3	319	35	7	4	52	1.50
4433668--4433724	17	3.4	17	78	7	64	35	1	0	63	1.05
4436569--4436593	11	2.3	11	100	0	50	48	0	36	16	1.46
4436596--4436639	24	1.9	23	86	9	63	81	4	11	2	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4436771--4436809	19	2.0	20	85	10	53	48	0	5	46	1.24
4454444--4454475	1	32.0	1	100	0	64	0	0	0	100	0.00
4461501--4461540	21	1.9	21	89	0	62	22	20	17	40	1.92
4465683--4465708	2	13.0	2	100	0	52	50	0	0	50	1.00
4465927--4465981	22	2.5	22	85	8	67	67	3	23	5	1.28
4468015--4468057	16	2.4	18	88	11	63	72	0	0	27	0.85
4468995--4469024	2	15.0	2	100	0	60	50	0	0	50	1.00
4474209--4474255	22	2.1	23	84	11	62	63	0	6	29	1.19
4474230--4474284	25	2.3	25	84	6	69	58	0	1	40	1.09
4474237--4474288	25	2.1	25	89	3	79	57	0	1	40	1.10
4474828--4474860	6	5.5	6	92	0	57	12	15	0	72	1.12
4475174--4475320	75	2.0	75	93	0	249	29	26	23	20	1.99
4488273--4488305	15	2.1	16	88	5	50	27	9	6	57	1.53
4493222--4493350	61	2.1	62	83	2	170	56	3	3	36	1.33
4495368--4495407	16	2.6	15	88	7	62	50	2	0	47	1.14
4495368--4495408	8	5.2	8	80	13	50	48	2	0	48	1.14
4495393--4495457	25	2.7	23	77	13	67	50	1	3	44	1.26
4495421--4495465	17	2.6	18	79	13	58	51	0	4	44	1.21
4495450--4495492	16	2.9	14	80	16	50	58	2	2	37	1.24
4496136--4496168	14	2.4	14	85	14	50	42	0	0	57	0.98
4496184--4496225	6	6.8	6	83	5	57	50	0	0	50	1.00
4497025--4497073	21	2.3	22	89	3	73	51	10	6	32	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4503295--4503348	24	2.3	23	87	3	81	44	1	0	53	1.11
4516803--4516829	2	13.5	2	100	0	54	48	0	0	51	1.00
4520057--4520081	2	12.5	2	100	0	50	0	0	48	52	1.00
4521587--4522071	240	2.0	241	85	4	658	38	10	7	43	1.68
4522155--4522353	72	2.8	72	80	11	196	42	5	5	46	1.48
4524102--4524162	23	2.6	24	87	10	90	62	0	1	36	1.05
4525074--4525377	108	2.8	107	79	10	287	33	15	9	41	1.80
4527968--4528003	14	2.6	14	86	13	56	77	0	0	22	0.76
4527968--4527999	16	1.9	17	93	6	57	78	0	0	21	0.76
4528149--4528197	19	2.5	19	86	6	62	26	8	8	57	1.56
4529519--4529557	17	2.2	19	86	9	55	15	0	7	76	0.99
4529625--4529996	58	6.5	58	79	11	371	51	6	7	35	1.55
4529628--4530079	111	4.0	106	77	13	312	49	6	8	35	1.60
4533988--4534020	8	4.2	8	88	3	50	75	0	9	15	1.03
4534936--4534975	21	1.9	22	90	10	66	40	12	2	45	1.56
4535163--4535252	43	2.1	43	85	0	117	37	7	12	42	1.71
4535186--4535252	23	3.0	23	65	12	59	35	5	13	44	1.68
4535452--4535538	17	5.2	17	77	5	97	36	17	10	35	1.84
4535452--4535540	33	2.7	33	86	6	128	37	16	10	35	1.83
4537381--4537826	56	8.0	56	76	14	293	49	4	9	36	1.57
4537370--4537772	56	7.1	58	78	10	347	49	5	9	36	1.57
4537444--4537840	57	7.1	54	72	17	187	49	5	9	36	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4537762--4537868	55	2.0	53	83	3	133	45	4	7	42	1.53
4540218--4540365	61	2.4	61	82	8	160	39	4	13	43	1.63
4541501--4541828	164	2.0	164	96	0	611	33	17	10	37	1.85
4544460--4544771	11	27.5	11	68	22	123	54	2	0	41	1.19
4544558--4544838	23	11.9	23	67	18	107	54	3	1	40	1.24
4544456--4544850	46	8.1	48	66	23	129	54	3	1	41	1.22
4544437--4544850	18	24.9	17	68	23	196	54	2	0	41	1.21
4544878--4544924	19	2.5	20	82	10	62	40	2	0	57	1.11
4544899--4545002	17	6.6	16	67	25	53	48	1	0	49	1.19
4544947--4545012	26	2.6	26	90	4	100	50	1	0	48	1.10
4545337--4545381	23	2.0	23	86	4	65	31	0	8	60	1.28
4545346--4545388	21	2.0	22	86	9	61	34	0	4	60	1.17
4545797--4545830	2	17.5	2	93	6	61	52	0	0	47	1.00
4547014--4547063	22	2.3	22	85	0	73	34	8	10	48	1.66
4547481--4547623	74	1.9	74	81	2	171	41	8	3	46	1.51
4547766--4547907	45	3.3	43	78	6	126	39	8	2	49	1.48
4547561--4547923	22	16.5	22	73	10	179	39	8	3	48	1.49
4548034--4548068	15	2.4	15	90	4	54	20	0	2	77	0.90
4548032--4548070	6	6.0	6	85	14	51	20	0	2	76	0.90
4548072--4548166	27	3.5	27	80	9	113	32	5	2	60	1.31
4549091--4549125	16	2.2	16	90	5	54	40	5	5	48	1.51
4549057--4549327	118	2.3	117	84	8	349	43	4	11	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4549057--4549327	58	4.7	58	81	7	318	43	4	11	39	1.63
4560849--4561052	43	4.7	43	85	3	275	23	13	18	45	1.85
4560769--4560914	78	1.8	79	85	5	206	23	13	19	43	1.86
4560849--4561044	87	2.3	86	87	2	268	22	13	17	45	1.84
4560780--4561053	130	2.2	123	82	8	329	22	13	17	45	1.84
4561248--4561283	15	2.4	15	95	0	63	19	0	2	77	0.88
4561279--4561317	18	2.3	18	86	8	55	41	2	0	56	1.13
4561298--4561375	27	2.8	28	86	3	113	30	5	2	61	1.31
4561310--4561383	27	2.8	26	86	8	96	28	5	2	63	1.30
4562131--4562200	3	23.0	3	87	8	97	30	1	1	67	1.08
4562127--4562247	15	7.6	16	76	12	99	28	1	3	66	1.16
4562322--4562513	68	3.0	67	79	13	226	38	5	12	43	1.65
4562267--4562513	126	2.0	125	85	6	338	41	4	11	42	1.62
4562390--4562632	58	4.1	58	78	7	213	41	5	12	40	1.66
4563274--4563332	20	2.9	21	76	5	66	37	5	6	50	1.51
4565550--4565602	26	2.0	26	96	0	97	26	7	11	54	1.62
4574548--4574590	18	2.2	21	88	12	65	55	2	0	41	1.12
4575586--4575612	4	6.8	4	100	0	54	0	22	0	77	0.76
4576101--4576275	85	2.1	85	91	2	289	28	9	19	43	1.81
4608787--4608821	15	2.3	15	85	0	52	28	5	22	42	1.76
4614741--4614886	43	3.4	43	81	3	177	27	24	16	31	1.96
4617288--4617375	31	2.8	31	85	0	122	42	14	4	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4618457--4618496	18	2.2	18	86	8	55	55	2	0	42	1.13
4618509--4618590	31	2.6	31	84	0	101	40	9	9	40	1.71
4624071--4624102	2	16.0	2	100	0	64	50	0	0	50	1.00
4624973--4625016	22	2.0	21	83	16	54	40	6	6	45	1.57
4625031--4625101	32	2.2	31	85	5	88	43	2	4	49	1.36
4625251--4625320	29	2.4	29	85	7	97	57	2	0	40	1.14
4625393--4625470	28	2.5	32	78	18	92	51	1	0	47	1.09
4625374--4625471	29	3.4	29	79	8	103	52	1	1	45	1.14
4626043--4626076	13	2.4	15	85	14	54	58	5	0	35	1.22
4626689--4626735	15	3.2	14	84	6	58	61	4	0	34	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195