genome.fa.s112.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  187  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32963240--32963301	26	2.5	24	77	17	63	37	12	4	45	1.64
32964353--32964751	124	3.2	122	87	4	530	47	14	10	28	1.76
32964328--32964748	42	10.1	42	84	4	505	47	14	11	27	1.78
32964849--32964935	41	2.1	41	82	0	102	35	14	6	42	1.73
32964864--32964946	41	2.0	41	90	0	130	36	15	8	39	1.78
32965064--32965122	22	2.7	22	84	2	84	40	13	6	38	1.71
32965351--32965388	20	1.9	20	94	0	67	34	13	21	31	1.91
32966089--32966119	9	3.6	9	91	8	55	9	0	0	90	0.46
32966089--32966119	8	3.8	8	95	4	53	9	0	0	90	0.46
32973738--32974198	59	7.7	59	83	5	575	34	13	6	45	1.69
32973738--32974198	117	3.8	120	86	4	653	34	13	6	45	1.69
32974241--32974307	20	3.1	21	85	14	77	77	2	10	8	1.09
32974328--32974380	24	2.3	22	83	6	61	79	5	3	11	1.03
32974899--32974952	25	2.2	25	86	6	74	35	18	5	40	1.74
32975395--32975514	6	19.7	6	69	27	51	61	5	0	33	1.17
32975404--32975516	39	2.9	39	77	11	110	61	6	0	32	1.21
32975396--32975510	42	2.7	41	76	17	110	60	5	0	33	1.19
32975395--32975511	20	6.6	16	71	23	67	61	5	0	33	1.18
32977809--32977900	46	2.0	46	86	0	130	44	7	19	28	1.78
32979098--32979148	25	2.0	26	81	11	61	39	11	5	43	1.66
32979348--32979393	7	6.7	7	78	14	51	26	0	0	73	0.83
32979604--32979642	13	3.1	13	88	3	53	76	5	0	17	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32983658--32984224	188	3.0	188	98	0	1100	41	14	18	25	1.89
32986183--32986214	2	16.5	2	93	6	57	0	50	0	50	1.00
32989552--32989858	158	1.9	157	85	5	424	30	19	18	31	1.96
32997118--32997274	52	3.0	52	87	0	224	26	22	7	42	1.80
32997558--32997660	25	4.2	24	73	7	75	20	32	9	37	1.85
32997578--32997683	50	2.1	50	79	6	117	18	33	10	37	1.85
32998122--32998278	52	3.0	51	81	7	190	25	21	8	44	1.80
32998303--32998344	11	3.8	11	83	0	57	50	28	0	21	1.49
32998303--32998345	22	2.0	22	90	0	68	48	27	0	23	1.51
33015851--33015916	25	2.6	27	79	13	77	54	0	0	45	0.99
33020475--33020545	27	2.5	29	84	13	94	35	1	4	59	1.26
33020475--33020545	29	2.5	26	82	17	81	35	1	4	59	1.26
33038209--33038235	2	13.5	2	100	0	54	51	0	48	0	1.00
33038808--33038873	19	3.3	20	71	25	52	40	3	0	56	1.15
33038802--33038861	31	1.9	30	87	12	86	38	1	0	60	1.07
33041782--33041815	16	2.1	16	88	0	50	58	0	0	41	0.98
33046676--33046724	20	2.5	19	83	9	64	38	14	10	36	1.80
33047270--33047314	17	2.7	17	82	3	56	26	8	13	51	1.70
33047730--33047900	66	2.6	65	83	1	200	22	18	12	47	1.81
33047923--33048064	43	3.3	42	76	13	146	30	11	10	47	1.73
33047923--33048102	43	4.2	43	75	4	139	26	12	11	48	1.75
33047923--33048115	86	2.2	86	82	7	223	26	12	11	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33051052--33051078	2	13.5	2	100	0	54	51	0	0	48	1.00
33051808--33051891	22	3.8	22	75	0	78	48	7	8	35	1.61
33051808--33051893	44	2.0	44	85	0	118	48	6	8	36	1.60
33051793--33051912	22	5.5	22	69	9	66	48	6	9	35	1.61
33051793--33051900	44	2.4	43	75	6	117	49	7	9	34	1.63
33051945--33052259	22	14.4	22	71	10	182	51	5	7	35	1.53
33051963--33052259	65	4.5	66	73	8	194	50	5	8	36	1.54
33051942--33052139	87	2.3	88	77	9	217	49	6	7	36	1.56
33052201--33052237	12	3.2	12	77	14	51	62	0	5	32	1.18
33052262--33052316	22	2.5	22	87	0	74	54	12	0	32	1.38
33052418--33052531	22	5.2	22	80	4	106	48	9	7	35	1.63
33052419--33052532	43	2.6	43	78	6	113	48	9	7	35	1.63
33052450--33052606	22	7.2	22	78	3	122	46	8	7	38	1.61
33052875--33053379	22	22.9	21	70	11	131	47	5	9	37	1.58
33053010--33053099	46	2.0	45	83	10	114	47	2	7	42	1.44
33053078--33053114	11	3.4	11	85	14	58	56	5	0	37	1.22
33052877--33053315	44	9.9	44	70	9	153	48	5	8	37	1.57
33053171--33053300	66	2.0	66	81	6	156	53	4	8	33	1.52
33053401--33053500	22	4.6	22	69	6	69	50	5	5	40	1.46
33053404--33053499	44	2.2	44	78	0	102	50	5	5	39	1.47
33053492--33053572	22	3.7	21	78	6	90	44	6	7	41	1.57
33053483--33053577	44	2.2	44	82	3	120	45	6	6	42	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33053492--33053584	11	8.5	11	66	4	53	46	6	6	40	1.55
33053557--33053615	11	5.4	11	79	0	55	54	3	3	38	1.34
33053933--33053983	21	2.4	21	90	0	75	50	7	1	39	1.42
33053937--33053979	10	4.2	10	76	5	50	48	9	2	39	1.48
33053952--33054021	21	3.3	20	80	7	77	50	11	4	34	1.58
33054067--33054118	22	2.2	22	83	10	59	51	5	1	40	1.37
33066032--33066069	20	1.9	20	100	0	76	44	15	23	15	1.85
33068665--33068698	2	17.0	2	100	0	68	50	0	0	50	1.00
33073253--33073277	2	12.5	2	100	0	50	52	0	0	48	1.00
33084399--33084471	29	2.5	29	100	0	146	42	5	23	28	1.76
33086138--33086166	9	3.2	9	100	0	58	24	10	0	65	1.23
33099916--33099953	19	2.0	20	89	5	60	68	5	15	10	1.36
33102604--33102646	3	14.0	3	90	4	68	32	30	2	34	1.71
33108072--33108107	18	2.0	18	88	0	54	61	0	0	38	0.96
33108674--33108858	102	1.8	101	91	1	307	45	12	9	31	1.75
33109157--33109204	15	2.8	18	76	23	59	62	0	0	37	0.95
33109165--33109210	15	3.1	15	84	6	67	65	2	0	32	1.05
33109165--33109210	14	3.1	14	81	6	56	65	2	0	32	1.05
33112644--33112669	3	8.7	3	100	0	52	65	0	0	34	0.93
33113238--33113308	24	3.0	23	75	6	70	49	1	1	47	1.18
33113286--33113343	30	2.0	29	82	3	71	56	1	1	39	1.19
33113318--33113360	16	2.6	17	88	3	61	55	2	2	39	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33113318--33113354	8	4.5	8	89	3	56	51	0	2	45	1.15
33122648--33122690	18	2.4	17	82	17	52	27	4	2	65	1.25
33123348--33123410	20	3.2	21	84	8	71	36	0	0	63	0.95
33123353--33123425	25	3.0	25	67	18	64	35	1	0	63	1.04
33123353--33123419	26	2.5	27	80	11	75	34	1	0	64	1.03
33133941--33134101	82	2.0	82	97	1	306	40	14	7	37	1.74
33140626--33141166	275	2.0	265	92	3	893	40	11	15	32	1.83
33154156--33154188	17	1.9	17	88	11	50	30	15	6	48	1.69
33160436--33160472	16	2.2	18	90	9	60	56	0	0	43	0.99
33172201--33172252	21	2.4	22	75	18	56	13	11	5	69	1.35
33173328--33173371	21	2.1	21	83	8	54	22	34	4	38	1.75
33181522--33181566	12	3.8	12	87	0	63	60	2	28	8	1.39
33191247--33191279	4	8.2	4	93	0	57	72	0	27	0	0.85
33196358--33196481	65	1.9	65	91	0	203	29	31	8	29	1.88
33196716--33196757	13	3.2	13	86	6	59	30	0	2	66	1.04
33201128--33201184	29	1.9	30	85	3	80	35	3	5	56	1.39
33204229--33204271	22	2.0	22	85	0	59	53	0	4	41	1.21
33209201--33209241	19	2.2	19	100	0	82	14	14	9	60	1.57
33210744--33210778	18	2.1	17	89	10	54	54	0	0	45	0.99
33212865--33212905	20	2.0	20	86	9	57	56	2	4	36	1.34
33213521--33213570	23	2.0	25	88	11	77	46	0	10	44	1.37
33213526--33213584	23	2.4	23	83	13	66	50	1	6	40	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33213574--33213613	14	2.9	14	88	7	55	72	0	0	27	0.85
33215694--33215776	29	2.8	30	78	12	91	48	1	6	44	1.35
33215848--33215882	19	1.9	19	88	11	56	42	0	0	57	0.99
33216206--33217573	371	3.7	371	83	2	1661	20	30	21	27	1.98
33219465--33219500	2	18.5	2	94	5	65	52	0	0	47	1.00
33223889--33223922	12	2.8	12	81	0	50	38	0	0	61	0.96
33223964--33224035	22	3.2	22	77	16	69	52	0	0	47	1.00
33223966--33224025	21	2.9	21	74	18	63	51	0	0	48	1.00
33224821--33224863	18	2.3	19	84	4	52	41	2	6	48	1.43
33224860--33224941	36	2.2	39	82	8	98	46	3	1	48	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195