genome.fa.s112.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  18  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4119715--4119768	24	2.2	24	96	0	99	62	7	1	27	1.32
4120298--4120340	17	2.6	16	85	10	59	67	0	0	32	0.91
4121122--4121235	23	5.0	23	70	13	67	46	0	2	50	1.15
4121133--4121235	42	2.4	42	81	12	113	46	0	2	50	1.16
4122539--4122632	46	2.0	46	93	0	161	23	14	24	37	1.93
4127814--4127876	21	3.0	20	73	11	56	55	3	3	38	1.32
4127916--4127984	19	3.7	19	76	20	65	56	0	0	43	0.99
4132358--4132384	14	1.9	14	100	0	54	18	7	7	66	1.40
4133445--4133493	20	2.5	21	86	6	59	69	0	2	28	1.00
4133444--4133468	7	3.6	7	100	0	50	76	0	0	24	0.80
4133600--4133631	9	3.6	9	91	0	55	65	12	0	21	1.25
4133655--4133719	10	7.0	10	76	13	59	29	0	0	70	0.87
4133679--4133798	9	13.4	9	69	11	52	36	2	1	59	1.21
4133671--4133726	17	3.2	17	73	14	51	30	0	0	69	0.89
4133658--4133699	19	2.2	20	86	4	59	23	0	0	76	0.79
4133655--4133726	18	3.9	19	77	12	69	30	0	0	69	0.89
4133704--4133749	24	1.9	25	86	8	69	30	2	2	65	1.16
4133746--4133794	19	2.5	19	87	9	64	46	4	2	46	1.33
4133952--4134018	33	2.0	33	88	5	100	67	4	7	20	1.34
4134243--4134267	13	1.9	13	100	0	50	80	0	4	16	0.87
4138345--4138369	11	2.3	11	100	0	50	16	28	8	48	1.74
4148872--4148910	19	2.1	19	90	0	60	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4148878--4148916	19	2.1	19	85	0	51	56	0	0	43	0.99
4149274--4149322	20	2.5	19	81	15	55	34	2	2	61	1.19
4149274--4149321	19	2.5	20	83	12	57	35	2	2	60	1.20
4155614--4155649	17	2.1	18	89	5	56	55	0	2	41	1.14
4173468--4173523	24	2.3	25	81	3	60	53	1	5	39	1.34
4175355--4175382	14	2.0	14	100	0	56	42	7	14	35	1.73
4176028--4176109	40	2.0	40	95	0	146	39	0	24	36	1.56
4179087--4179128	15	2.6	16	82	17	52	38	4	9	47	1.57
4186422--4186467	24	2.0	23	91	4	74	69	0	2	28	1.00
4195991--4196032	21	2.0	21	86	13	61	28	19	4	47	1.69
4198577--4198610	15	2.2	16	89	5	52	61	0	0	38	0.96
4214637--4214686	24	2.1	24	85	7	66	46	0	0	54	1.00
4214624--4214682	29	2.1	29	87	6	86	44	0	1	54	1.10
4217100--4217130	14	2.2	14	94	0	53	74	0	0	25	0.82
4218173--4218393	63	3.5	59	75	11	167	38	9	9	41	1.72
4218498--4218551	28	1.9	28	92	0	90	37	7	5	50	1.54
4218959--4219135	88	2.0	88	92	2	293	35	19	10	34	1.86
4227879--4227970	47	2.0	46	86	2	130	40	9	7	42	1.66
4235274--4235523	125	2.0	126	92	3	416	35	11	5	47	1.63
4235670--4235750	21	4.0	20	80	9	85	77	2	1	18	0.94
4235654--4235739	12	6.8	12	72	15	66	76	3	1	18	0.99
4238830--4238859	2	15.0	2	92	0	51	46	0	3	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4242673--4242735	21	3.0	20	75	13	56	38	3	3	55	1.32
4242938--4242976	15	2.5	15	83	4	51	7	7	2	82	0.94
4244102--4244161	29	2.1	29	85	11	81	45	0	1	53	1.10
4244107--4244171	29	2.3	30	79	15	75	46	0	1	52	1.10
4244318--4244349	16	2.1	15	94	5	55	25	0	3	71	1.00
4244720--4244749	3	10.0	3	100	0	60	66	0	0	33	0.92
4259369--4259409	21	2.0	21	85	0	55	53	0	0	46	1.00
4261617--4261660	23	2.0	23	82	13	56	31	9	11	47	1.71
4263428--4263474	10	4.6	10	77	15	51	34	0	4	61	1.15
4263439--4263485	17	2.5	19	83	10	62	31	0	4	63	1.13
4263488--4263556	21	3.3	20	78	6	75	49	5	2	42	1.41
4264370--4264412	2	22.0	2	90	4	70	53	0	0	46	1.00
4267806--4267881	27	2.8	26	96	4	134	26	5	31	36	1.79
4276899--4276933	16	2.2	16	90	5	54	22	2	0	74	0.95
4280130--4280216	38	2.3	38	95	0	156	21	8	32	37	1.83
4283629--4283655	2	13.5	2	100	0	54	48	0	0	51	1.00
4285351--4285384	3	11.3	3	100	0	68	32	0	0	67	0.91
4294128--4294173	21	2.2	21	84	0	56	39	2	2	56	1.24
4294424--4294464	20	2.0	20	86	9	57	14	24	0	60	1.34
4295517--4295541	2	12.5	2	100	0	50	52	0	0	48	1.00
4298441--4298543	51	2.0	51	90	3	163	26	14	17	41	1.88
4298917--4298982	29	2.3	29	78	5	71	53	3	15	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4299073--4299097	3	8.3	3	100	0	50	32	0	0	68	0.90
4299233--4299270	10	4.0	10	83	13	53	52	0	0	47	1.00
4301657--4301777	62	2.0	62	94	0	215	29	16	22	31	1.96
4304040--4304086	23	2.0	23	100	0	94	31	12	12	42	1.81
4305259--4305318	21	3.0	20	81	16	70	58	1	0	40	1.08
4305276--4305334	25	2.3	24	82	11	64	66	1	0	32	1.02
4305267--4305328	21	3.1	20	77	13	65	61	0	0	38	0.96
4306774--4306952	16	11.5	16	71	16	108	46	34	1	18	1.57
4306896--4306955	14	4.1	14	81	8	66	51	35	0	13	1.41
4306951--4307006	14	3.9	14	75	13	51	50	32	0	17	1.47
4306900--4307009	51	2.2	51	85	9	145	48	35	0	16	1.47
4312334--4312386	26	2.0	26	85	0	70	28	1	3	66	1.20
4319648--4319709	22	2.8	20	81	13	70	32	27	16	24	1.96
4319774--4319847	23	3.2	23	80	5	87	29	21	17	31	1.96
4319648--4320217	133	4.3	133	80	5	640	24	19	17	38	1.93
4320039--4320100	23	2.7	23	90	2	90	27	27	16	29	1.97
4320281--4320362	22	3.6	22	85	4	85	26	21	17	34	1.95
4320436--4320509	23	3.2	23	86	0	103	24	17	22	35	1.95
4320304--4320750	133	3.2	132	73	16	342	24	18	17	39	1.92
4320171--4320641	155	3.0	156	85	0	640	23	18	18	38	1.93
4320591--4320658	23	3.0	23	80	2	66	26	20	20	32	1.97
4320459--4320768	132	2.3	133	83	2	383	25	18	17	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4320635--4320860	110	2.1	110	83	3	285	25	19	15	39	1.90
4321111--4321170	21	3.0	20	81	16	70	58	0	0	41	0.98
4321128--4321191	27	2.5	26	80	12	69	68	0	0	31	0.90
4321119--4321180	21	3.1	20	77	13	65	61	0	0	38	0.96
4321178--4321207	15	2.0	15	93	0	51	83	3	6	6	0.90
4322601--4322780	17	11.2	16	75	8	134	51	28	1	17	1.55
4322601--4322780	32	5.6	31	77	14	170	51	28	1	17	1.55
4322617--4322780	8	20.2	8	68	15	61	51	28	1	17	1.56
4322801--4322911	14	8.1	14	70	20	74	51	31	0	17	1.45
4322801--4322860	30	2.1	28	84	6	75	53	30	0	16	1.44
4322814--4322914	51	2.0	50	88	7	150	49	31	0	18	1.48
4322869--4322900	16	2.0	16	93	0	55	43	34	0	21	1.53
4324030--4324054	4	6.2	4	100	0	50	52	24	0	24	1.48
4329349--4329374	13	2.0	13	100	0	52	46	7	15	30	1.74
4329639--4329687	25	1.9	26	83	4	64	48	0	0	51	1.00
4333301--4333345	24	1.9	23	90	4	72	37	15	13	33	1.86
4335827--4335881	28	2.0	28	85	7	76	34	1	3	60	1.25
4336260--4336296	2	18.5	2	100	0	74	51	0	0	48	1.00
4337181--4337244	6	10.5	6	73	15	51	56	1	1	40	1.18
4343680--4343779	50	2.0	50	100	0	200	30	20	18	32	1.96
4347029--4347080	24	2.2	24	82	0	59	26	1	7	63	1.32
4352112--4352139	1	28.0	1	100	0	56	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4352512--4352545	2	17.0	2	87	0	50	44	0	5	50	1.26
4353636--4353685	2	25.5	2	82	11	59	46	4	2	48	1.32
4354761--4355014	119	2.1	122	80	11	310	47	4	9	38	1.57
4354787--4355059	60	4.6	59	84	4	327	46	5	10	38	1.60
4354787--4355059	119	2.3	120	86	5	367	46	5	10	38	1.60
4358310--4358346	15	2.5	15	86	0	56	21	21	5	51	1.68
4365896--4366507	79	7.5	79	74	9	350	23	19	12	45	1.84
4366062--4366355	86	3.4	86	83	0	363	24	21	11	42	1.86
4366056--4366713	86	7.9	85	73	9	257	22	19	12	45	1.83
4367910--4368389	60	8.1	58	78	9	260	47	5	9	37	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195