genome.fa.s112.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  115  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20040475--20040529	27	2.1	26	83	6	67	54	10	5	29	1.57
20040904--20040956	26	2.0	26	96	0	97	26	24	22	26	2.00
20041795--20041848	26	2.1	26	96	0	99	25	25	20	27	1.99
20044481--20044533	26	2.0	26	100	0	106	26	26	20	26	1.99
20045375--20045427	26	2.0	26	88	0	79	35	24	13	26	1.92
20046277--20046327	26	2.0	26	100	0	102	27	29	15	27	1.96
20047179--20047231	26	2.0	26	96	0	97	28	26	18	26	1.98
20048977--20049029	26	2.0	26	92	0	88	28	26	16	28	1.97
20049873--20049925	26	2.0	26	96	0	97	28	26	20	24	1.99
20050773--20050825	26	2.0	26	88	0	79	26	26	16	30	1.97
20051669--20051721	26	2.0	26	85	0	70	28	24	20	26	1.99
20052554--20052606	26	2.0	26	92	0	88	26	22	20	30	1.98
20040157--20055064	894	16.6	899	86	2	19552	26	24	23	25	2.00
20053455--20053507	26	2.0	26	96	0	97	26	24	20	28	1.99
20054361--20054411	26	2.0	26	88	0	75	31	21	15	31	1.95
20055121--20055170	26	2.0	24	92	7	82	26	26	16	32	1.96
20054323--20055820	760	2.0	750	88	4	2215	26	24	22	26	2.00
20056001--20056051	26	1.9	27	92	4	86	23	27	19	29	1.98
20057633--20057685	26	2.0	26	96	0	97	28	24	20	26	1.99
20058519--20058571	26	2.0	26	96	0	97	28	24	20	26	1.99
20056712--20061526	886	5.4	891	88	3	6461	25	25	24	24	2.00
20059412--20059464	26	2.0	26	96	0	97	24	24	20	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20061187--20061239	26	2.0	26	96	0	97	26	24	22	26	2.00
20061981--20062033	26	2.0	26	92	0	88	28	24	20	26	1.99
20062874--20062926	26	2.0	26	92	0	88	30	26	16	26	1.97
20065422--20065474	26	2.0	26	96	0	97	28	26	15	30	1.96
20066324--20066376	26	2.0	26	92	0	88	30	26	16	26	1.97
20064563--20067846	902	3.7	894	84	5	4214	26	24	24	24	2.00
20067212--20067264	26	2.0	26	92	0	88	28	24	18	28	1.98
20067238--20068484	641	2.0	636	87	3	1797	28	20	23	26	1.99
20067844--20071744	879	4.4	879	86	3	5169	25	24	24	25	2.00
20071382--20071435	26	2.1	26	92	0	90	22	29	20	27	1.98
20072051--20072103	26	2.0	26	88	0	79	24	22	22	30	1.99
20072840--20072892	26	2.0	26	100	0	106	26	26	20	26	1.99
20072050--20073622	786	2.0	789	88	1	2336	27	24	22	25	2.00
20074575--20074627	26	2.0	26	96	0	97	32	26	15	26	1.95
20077127--20077182	26	2.2	26	86	0	76	28	26	19	25	1.99
20078008--20078060	26	2.0	26	96	0	97	28	26	18	26	1.98
20078903--20078954	26	2.0	26	100	0	104	34	23	15	26	1.94
20076254--20079868	894	4.1	895	85	4	4692	25	24	24	25	2.00
20079796--20079848	26	2.0	26	96	0	97	28	26	18	26	1.98
20080138--20080188	26	2.0	26	100	0	102	27	25	19	27	1.99
20079950--20083862	901	4.3	898	87	1	5350	25	25	24	25	2.00
20082834--20082886	26	2.0	26	96	0	97	24	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20083740--20083792	26	2.0	26	85	7	72	32	22	16	28	1.96
20086399--20086478	26	3.1	26	100	0	160	27	26	20	26	1.99
20088166--20088216	26	2.0	26	96	0	93	33	25	13	27	1.94
20089839--20089891	26	2.0	26	88	0	79	32	24	16	26	1.97
20090711--20090789	26	3.0	26	94	0	131	27	26	18	26	1.98
20088979--20092384	895	3.8	885	85	4	4367	26	24	23	25	2.00
20091631--20091683	26	2.0	26	88	0	79	26	24	18	30	1.98
20094120--20094172	26	2.0	26	96	0	97	28	26	18	26	1.98
20092356--20095779	878	3.8	891	86	3	4489	25	24	24	25	2.00
20097518--20097570	26	2.0	26	96	0	97	26	24	20	28	1.99
20098401--20098453	26	2.0	26	92	0	88	28	24	18	28	1.98
20095758--20099344	898	4.0	890	86	3	4757	26	25	23	25	2.00
20099164--20099523	179	2.0	179	86	2	499	21	26	28	23	1.99
20099484--20099536	26	2.0	26	88	0	79	30	24	16	28	1.97
20100375--20100427	26	2.0	26	100	0	106	26	26	20	26	1.99
20099343--20102943	896	4.0	898	86	4	4877	25	24	24	25	2.00
20102180--20103637	715	2.0	708	88	2	2170	26	23	24	25	2.00
20103763--20103815	26	2.0	26	92	7	90	30	26	16	26	1.97
20103789--20105277	715	2.1	717	90	1	2344	26	24	23	25	2.00
20105381--20105433	26	2.0	26	85	0	70	30	22	16	30	1.96
20106287--20106339	26	2.0	26	92	0	88	28	24	18	28	1.98
20104507--20112385	867	8.9	902	87	3	10575	25	25	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20108056--20108108	26	2.0	26	96	0	97	26	24	20	28	1.99
20107180--20118390	884	12.6	884	77	9	9694	25	24	23	25	2.00
20108932--20108984	26	2.0	26	88	0	79	24	22	20	32	1.98
20109799--20109851	26	2.0	26	92	0	88	24	24	20	30	1.99
20110694--20110743	26	1.9	26	95	0	91	26	24	20	30	1.98
20111593--20111645	26	2.0	26	96	0	97	26	26	18	28	1.98
20113194--20113246	26	2.0	26	85	0	70	24	24	18	32	1.97
20113429--20113485	26	2.1	27	93	3	98	28	24	19	28	1.98
20114340--20114392	26	2.0	26	92	0	88	28	24	18	28	1.98
20116089--20116141	26	2.0	26	88	0	79	28	26	16	28	1.97
20116992--20117044	26	2.0	26	96	0	97	28	26	18	26	1.98
20104507--20118014	903	15.1	883	78	9	10816	25	25	24	25	2.00
20119553--20119605	26	2.0	26	100	0	106	26	26	20	26	1.99
20121309--20124444	858	3.6	872	81	8	3568	26	24	22	25	2.00
20122745--20122797	26	2.0	26	96	0	97	28	26	18	26	1.98
20123611--20123663	26	2.0	26	92	7	90	30	26	16	26	1.97
20124261--20124642	171	2.2	171	76	8	375	18	33	26	21	1.96
20124686--20124735	26	1.9	26	91	0	82	30	26	18	26	1.98
20125579--20125631	26	2.0	26	96	0	97	26	20	20	32	1.98
20124491--20128108	896	4.1	892	87	4	4829	25	24	24	25	2.00
20127346--20127398	26	2.0	26	96	0	97	28	26	18	26	1.98
20127341--20128844	737	2.0	736	88	1	2240	26	24	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20128108--20130033	975	2.0	976	86	3	2703	25	24	23	26	2.00
20132603--20132655	26	2.0	26	96	0	97	28	26	18	26	1.98
20133494--20133546	26	2.0	26	96	0	97	28	26	18	26	1.98
20134395--20134447	26	2.0	26	92	0	88	26	26	18	28	1.98
20131728--20138888	901	8.0	900	85	4	9362	25	25	24	24	2.00
20136193--20136243	26	2.0	26	92	0	84	27	25	17	29	1.98
20137960--20138017	26	2.2	26	90	3	89	31	24	18	25	1.98
20139657--20139709	26	2.0	26	96	0	97	30	28	16	24	1.97
20139256--20142213	902	3.3	894	85	4	3715	25	24	23	25	2.00
20142177--20160624	902	20.4	874	70	14	8276	25	24	24	25	2.00
20143938--20143990	26	2.0	26	92	0	88	28	24	18	28	1.98
20142200--20160624	877	20.3	885	70	13	8451	25	24	24	25	2.00
20149257--20149309	26	2.0	26	96	0	97	26	28	20	24	1.99
20149099--20149523	185	2.3	185	83	2	530	23	30	26	20	1.98
20149442--20149492	26	2.0	26	96	0	93	25	27	17	29	1.98
20150337--20150389	26	2.0	26	88	0	79	28	22	20	28	1.99
20151242--20151294	26	2.0	26	92	0	88	28	24	18	28	1.98
20149283--20160624	905	12.6	900	75	9	7599	25	24	24	25	2.00
20153635--20153686	26	2.0	26	92	7	88	28	26	15	28	1.96
20155861--20155913	26	2.0	26	88	0	79	26	24	20	28	1.99
20156310--20156366	26	2.3	25	84	6	71	47	22	5	24	1.72
20156752--20156804	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20155887--20163126	902	8.2	868	81	7	7529	25	24	24	25	2.00
20159375--20159427	26	2.0	26	96	0	97	28	26	18	26	1.98
20160280--20160332	26	2.0	26	89	7	81	32	26	15	26	1.95
20161134--20161186	26	2.0	26	100	0	106	26	26	20	26	1.99
20160622--20163126	877	2.8	877	85	4	3067	25	24	24	25	2.00
20162560--20163677	565	2.0	566	84	3	1462	21	27	28	22	1.99
20164356--20164407	26	2.0	25	88	3	77	26	23	21	28	1.99
20165256--20165323	26	2.6	26	81	4	84	23	22	23	30	1.99
20166168--20166220	26	2.0	26	96	0	97	28	26	18	26	1.98
20166301--20166330	11	2.7	11	100	0	60	23	30	26	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195