genome.fa.s112.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  129  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21894941--21894984	19	2.3	18	82	17	54	36	0	2	61	1.09
21895019--21895093	18	3.4	21	74	23	66	22	5	4	68	1.28
21895940--21895964	13	1.9	13	100	0	50	16	0	4	80	0.87
21895941--21896050	21	5.1	21	69	18	75	20	3	3	72	1.15
21896005--21896063	17	3.6	16	73	15	57	13	8	1	76	1.09
21895992--21896073	39	2.1	39	82	8	96	14	8	1	75	1.09
21896033--21896074	22	1.9	22	90	9	68	16	11	0	71	1.14
21896081--21896376	59	5.0	59	86	6	395	46	7	11	34	1.69
21896081--21896376	119	2.5	116	87	4	416	46	7	11	34	1.69
21898524--21898571	10	4.8	10	78	19	55	83	12	0	4	0.79
21898536--21898576	11	3.5	11	83	9	55	85	12	0	2	0.70
21898526--21898578	19	2.8	18	86	8	63	84	11	0	3	0.73
21898527--21898584	16	3.7	16	76	19	68	81	12	1	5	0.94
21898814--21898843	14	2.1	14	93	6	51	33	0	0	66	0.92
21898902--21898936	18	1.9	18	88	0	52	17	11	5	65	1.43
21899871--21899931	18	3.5	17	72	18	54	13	8	1	77	1.07
21899901--21899942	22	1.9	22	85	9	59	14	11	2	71	1.24
21899956--21900345	57	6.6	57	80	12	400	46	8	12	32	1.72
21901753--21901802	26	1.9	26	91	0	82	32	16	22	30	1.95
21902184--21902239	27	2.1	27	83	6	71	25	8	16	50	1.74
21903551--21903603	26	2.0	26	85	7	72	26	20	22	30	1.98
21900830--21916877	899	18.1	900	83	5	18922	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21904453--21904502	26	1.9	26	95	0	91	28	20	26	26	1.99
21905345--21905397	26	2.0	26	100	0	106	26	20	26	26	1.99
21908015--21908093	26	3.0	26	96	0	140	26	20	25	27	1.99
21910710--21910762	26	2.0	26	92	0	88	26	18	24	30	1.98
21915063--21915115	26	2.0	26	88	0	79	26	22	24	26	2.00
21916804--21916856	26	2.0	26	88	0	79	26	16	24	32	1.97
21918376--21918428	26	2.0	26	96	0	97	26	18	26	28	1.98
21919286--21919336	26	2.0	26	100	0	102	27	15	27	29	1.96
21916896--21919584	895	3.0	903	91	2	4450	25	25	24	25	2.00
21919858--21919913	26	2.2	26	96	0	103	26	17	25	30	1.97
21920729--21920783	26	2.1	27	96	3	103	30	20	27	21	1.98
21921624--21921676	26	2.0	26	92	0	88	28	22	22	26	1.99
21920432--21922623	898	2.4	896	86	2	3023	25	25	24	24	2.00
21922430--21922454	11	2.3	11	100	0	50	20	32	28	20	1.97
21922535--21922587	26	2.0	26	100	0	106	26	16	26	30	1.97
21923571--21924133	286	2.0	286	90	1	880	23	17	22	35	1.95
21927342--21927394	26	2.0	26	92	0	88	24	18	26	30	1.98
21928239--21928290	26	2.0	26	92	0	86	28	17	26	26	1.97
21931797--21931849	26	2.0	26	88	0	79	30	18	24	26	1.98
21932700--21932752	26	2.0	26	92	0	88	28	18	24	28	1.98
21933610--21933659	26	1.9	26	95	0	91	30	20	26	24	1.98
21936277--21936329	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21937168--21937219	26	2.0	26	92	0	86	30	19	23	26	1.98
21926178--21947007	903	23.4	896	85	4	25719	25	24	24	25	2.00
21941582--21941633	26	2.0	26	96	0	95	28	19	25	26	1.98
21942481--21942533	26	2.0	26	92	0	88	28	18	24	28	1.98
21943383--21943435	26	2.0	26	85	7	72	26	22	20	30	1.98
21945158--21945210	26	2.0	26	96	0	97	26	18	26	28	1.98
21945846--21945876	12	2.6	12	100	0	62	38	19	29	12	1.89
21946046--21946096	26	2.0	26	96	0	93	27	17	27	27	1.98
21946928--21946980	26	2.0	26	89	7	81	28	18	24	28	1.98
21953172--21953224	26	2.0	26	96	0	97	26	15	26	32	1.95
21954902--21954954	26	2.0	26	96	0	97	26	18	26	28	1.98
21955797--21955849	26	2.0	26	100	0	106	26	20	26	26	1.99
21956692--21956744	26	2.0	26	92	0	88	24	18	26	30	1.98
21957593--21957645	26	2.0	26	92	0	88	26	18	26	28	1.98
21954832--21958704	895	4.3	895	88	1	5449	25	24	24	25	2.00
21958493--21958545	26	2.0	26	92	0	88	26	20	24	28	1.99
21958678--21958730	26	2.0	26	88	0	79	26	18	24	30	1.98
21958490--21958889	185	2.2	185	85	1	525	24	28	26	21	1.99
21959586--21959638	26	2.0	26	92	0	88	26	20	22	30	1.98
21960463--21960514	26	2.0	26	92	0	86	28	17	25	28	1.97
21961188--21961240	26	2.0	26	92	0	88	30	16	24	28	1.97
21962103--21962155	26	2.0	26	92	0	88	26	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21960489--21963731	915	3.6	893	87	4	4493	26	23	24	26	2.00
21963627--21963835	104	2.0	104	96	0	382	29	18	29	22	1.97
21964006--21964058	26	2.0	26	96	0	97	26	18	26	28	1.98
21964899--21964951	26	2.0	26	92	7	90	28	16	26	28	1.97
21965681--21965733	26	2.0	26	92	7	90	28	16	26	28	1.97
21964608--21966967	782	3.0	775	88	4	3351	24	25	24	25	2.00
21966182--21970945	902	5.3	896	85	4	5930	25	24	24	25	2.00
21968252--21968311	26	2.4	26	86	5	79	30	20	23	26	1.98
21969161--21969211	26	2.0	26	96	0	93	27	17	27	27	1.98
21970055--21970105	25	2.0	26	92	3	86	25	17	27	29	1.98
21972527--21972577	26	2.0	26	92	0	84	29	17	23	29	1.97
21970918--21977230	903	7.1	899	85	5	8027	25	24	25	25	2.00
21976077--21976129	26	2.0	26	85	7	72	32	18	20	28	1.97
21976980--21977032	26	2.0	26	96	0	97	28	20	24	26	1.99
21977058--21977394	166	2.0	167	82	4	403	19	31	31	17	1.95
21978039--21978091	26	2.0	26	96	0	97	28	20	24	26	1.99
21980659--21980711	26	2.0	26	89	7	81	30	16	24	28	1.97
21981549--21981599	26	2.0	26	92	0	84	31	19	21	27	1.97
21979337--21985463	890	6.9	895	83	6	7257	25	24	25	25	2.00
21985068--21985120	26	2.0	26	89	7	81	32	20	22	24	1.98
21985841--21985893	26	2.0	26	89	7	81	28	16	24	30	1.97
21986723--21986775	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21987621--21987673	26	2.0	26	96	0	97	26	18	26	28	1.98
21989368--21989420	26	2.0	26	92	7	90	28	20	24	26	1.99
21990267--21990319	26	2.0	26	92	0	88	28	18	24	28	1.98
21988829--21995188	899	7.1	899	85	2	8104	25	24	24	26	2.00
21985458--21995188	900	11.0	886	85	4	11852	25	24	24	25	2.00
21992942--21992994	26	2.0	26	96	0	97	28	20	24	26	1.99
21993844--21993894	26	2.0	26	92	0	84	29	17	23	29	1.97
21994738--21994790	26	2.0	26	92	0	88	30	20	24	24	1.99
21997350--21997402	26	2.0	26	92	0	88	28	18	24	28	1.98
21998237--21998289	26	2.0	26	92	0	88	28	18	24	28	1.98
21999418--21999465	25	1.9	25	95	0	87	25	18	29	27	1.98
21999057--21999614	285	1.9	288	86	2	793	24	28	25	21	1.99
22000293--22000344	26	2.0	25	85	10	70	28	13	26	30	1.94
22001192--22001243	25	2.0	26	96	3	97	26	21	25	26	1.99
21999437--22005586	879	7.0	873	84	5	7190	25	23	24	26	2.00
22003816--22003868	26	2.0	26	96	0	97	28	20	24	26	1.99
22004708--22004760	26	2.0	26	96	0	97	26	18	26	28	1.98
22005615--22005667	26	2.0	26	88	0	79	28	18	22	30	1.98
22006209--22006260	26	2.0	26	96	0	95	26	17	26	28	1.97
22007118--22007170	26	2.0	26	100	0	106	26	20	26	26	1.99
22009782--22009837	26	2.2	26	96	0	103	26	17	25	30	1.97
22010674--22010729	26	2.2	26	90	6	87	26	16	23	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22006137--22023745	873	19.4	892	75	11	8663	25	24	24	25	2.00
22013840--22013918	26	3.0	26	90	0	122	26	20	24	29	1.99
22017225--22017277	26	2.0	26	100	0	106	26	20	26	26	1.99
22014141--22023745	873	10.8	898	87	3	11923	25	24	24	25	2.00
22022556--22022608	26	2.0	26	92	0	88	26	20	24	28	1.99
22023443--22023495	26	2.0	26	100	0	106	26	20	26	26	1.99
22024130--22024179	26	1.9	26	100	0	100	28	22	26	24	1.99
22025030--22025079	26	1.9	26	100	0	100	28	22	26	24	1.99
22027018--22027248	118	2.0	118	90	2	367	34	13	8	43	1.75
22027018--22027242	58	3.9	57	86	6	308	34	13	8	43	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195