genome.fa.s112.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  89  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16598730--16598782	26	2.0	26	92	0	88	24	24	20	30	1.99
16600425--16600476	26	2.0	26	88	3	79	28	23	19	28	1.98
16602178--16602253	26	2.9	26	94	0	125	26	25	18	30	1.98
16603109--16603158	26	1.9	26	87	0	73	28	28	16	28	1.97
16601320--16606354	891	5.6	890	84	5	6197	25	24	24	25	2.00
16603999--16604051	26	2.0	26	96	0	97	26	28	20	24	1.99
16605350--16605398	25	1.9	26	87	4	73	59	10	10	20	1.59
16605766--16605818	26	2.0	26	96	0	97	28	22	20	28	1.99
16607451--16607499	19	2.6	19	80	3	55	67	4	8	20	1.34
16607640--16607681	3	14.0	3	81	18	52	69	2	0	28	1.01
16607690--16607718	15	1.9	15	100	0	58	82	0	17	0	0.66
16607683--16607718	7	4.9	7	90	10	54	83	0	16	0	0.65
16609145--16612082	725	4.1	705	82	8	3252	26	24	23	26	2.00
16612186--16612264	26	3.0	26	92	0	131	27	25	18	27	1.98
16612238--16614411	706	3.1	691	83	9	2692	26	23	23	26	2.00
16616292--16616344	26	2.0	26	92	0	88	24	24	18	32	1.97
16613657--16618220	895	5.1	889	85	7	5585	25	24	24	25	2.00
16618880--16618932	26	2.0	26	92	0	88	28	24	18	28	1.98
16620632--16620707	26	2.9	26	94	0	125	26	25	18	30	1.98
16621562--16621612	26	2.0	26	88	0	75	29	27	15	27	1.96
16619767--16624996	892	5.8	893	84	5	6322	25	24	23	25	2.00
16622453--16622505	26	2.0	26	96	0	97	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16623805--16623853	25	1.9	26	87	4	73	59	10	10	20	1.59
16624230--16624282	26	2.0	26	96	0	97	28	24	20	26	1.99
16624970--16625022	26	2.0	26	92	0	88	30	26	16	26	1.97
16625854--16625907	26	2.1	26	89	6	83	27	29	20	22	1.98
16624995--16627529	877	2.9	865	81	9	2983	25	24	23	25	2.00
16628103--16628155	26	2.0	26	96	0	97	26	24	20	28	1.99
16629006--16629058	26	2.0	26	92	0	88	26	24	24	24	2.00
16628102--16634680	904	7.4	893	82	5	7618	25	24	24	26	2.00
16630741--16630791	26	2.0	26	96	0	93	29	25	15	29	1.96
16631639--16631691	26	2.0	26	92	0	88	28	26	20	24	1.99
16632518--16632568	26	2.0	26	96	0	93	25	25	19	29	1.99
16633413--16633465	26	2.0	26	88	0	79	28	18	18	33	1.95
16635123--16635173	26	2.0	26	96	0	93	27	27	19	25	1.99
16634676--16637487	890	3.2	874	85	5	3582	26	24	23	25	2.00
16637050--16637976	489	1.9	489	91	1	1527	30	21	20	27	1.98
16638275--16638326	26	1.9	27	88	7	79	23	26	19	30	1.98
16638303--16641198	715	4.1	711	87	3	3894	26	23	22	26	2.00
16641301--16645635	905	4.8	885	85	4	5360	26	24	24	25	2.00
16643967--16644016	26	1.9	26	100	0	100	28	26	20	26	1.99
16644859--16644911	26	2.0	26	96	0	97	28	26	18	26	1.98
16647310--16647360	26	2.0	26	100	0	102	25	27	19	27	1.99
16648211--16648263	26	2.0	26	85	0	70	26	18	20	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16646436--16649876	901	3.8	896	86	3	4725	25	24	24	25	2.00
16649156--16650594	708	2.0	699	88	3	2156	27	23	23	25	2.00
16649826--16657171	862	8.3	878	84	6	8298	25	25	24	25	2.00
16654231--16654283	26	2.0	26	96	0	97	28	26	18	26	1.98
16655786--16655815	8	3.8	8	95	0	51	0	63	26	10	1.26
16655997--16656047	26	2.0	26	84	7	68	27	25	17	29	1.98
16660966--16661018	26	2.0	26	92	0	88	26	22	20	30	1.98
16657413--16662432	873	5.6	894	86	4	6547	25	24	23	25	2.00
16661839--16661891	26	2.0	26	96	0	97	24	28	20	26	1.99
16664237--16664288	26	2.0	26	88	0	77	28	19	23	28	1.98
16665134--16665186	26	2.0	26	92	0	88	26	18	24	30	1.98
16665928--16665957	14	2.1	14	93	0	51	23	23	30	23	1.99
16667104--16667165	16	3.9	16	97	0	115	11	12	64	11	1.50
16667813--16667865	26	2.0	26	96	0	97	28	20	24	26	1.99
16663645--16669604	872	6.7	896	83	6	7087	25	24	24	26	2.00
16668700--16668752	26	2.0	26	92	0	88	30	22	20	26	1.98
16669137--16669161	10	2.5	10	100	0	50	32	0	0	68	0.90
16668863--16670867	712	2.8	713	89	2	3035	26	22	23	27	2.00
16671112--16675453	718	6.1	716	85	3	5463	25	22	24	27	2.00
16678638--16678687	26	1.9	26	91	0	82	32	22	24	22	1.98
16679545--16679594	26	1.9	26	100	0	100	28	20	30	22	1.98
16681436--16681734	159	1.9	157	83	4	366	21	28	31	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16682327--16682723	184	2.2	186	79	4	444	23	26	28	21	1.99
16684261--16684313	26	2.0	26	92	0	88	22	20	30	26	1.98
16682747--16685212	901	2.8	879	85	5	2919	25	24	24	25	2.00
16685315--16685367	26	2.0	26	89	7	81	28	26	18	26	1.98
16686057--16686109	26	2.0	26	96	0	97	26	24	20	28	1.99
16687797--16687849	26	2.0	26	92	7	90	28	28	16	26	1.97
16688626--16688679	26	2.1	26	89	0	81	33	24	16	25	1.96
16689431--16689483	26	2.0	26	92	0	88	30	24	18	26	1.98
16690305--16690360	26	2.2	26	96	0	103	28	23	19	28	1.98
16692104--16692156	26	2.0	26	85	7	72	28	22	22	26	1.99
16692989--16693041	27	2.0	27	96	3	99	30	22	18	28	1.98
16693892--16693944	26	2.0	26	96	0	97	24	26	22	26	2.00
16697457--16697509	26	2.0	26	96	0	97	26	24	20	28	1.99
16698346--16710007	898	13.1	896	82	6	12993	25	24	24	25	2.00
16701017--16701068	26	2.0	26	96	0	95	26	25	19	28	1.98
16701923--16710007	895	9.1	901	80	8	7103	26	24	23	25	2.00
16707163--16707215	26	2.0	26	96	0	97	28	26	18	26	1.98
16708067--16708120	27	2.0	27	85	3	74	24	24	18	33	1.97
16708962--16709014	26	2.0	26	92	0	88	28	24	18	28	1.98
16709423--16709495	21	3.5	20	90	7	110	57	6	6	28	1.51
16709425--16709495	11	6.6	11	80	6	83	59	5	7	28	1.47
16709859--16709910	26	2.0	26	88	0	77	26	25	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16710290--16710342	26	2.0	26	96	0	97	26	24	20	28	1.99
16710758--16710830	11	6.9	11	78	12	55	58	12	4	24	1.51
16710760--16710819	20	2.9	21	85	5	86	60	15	3	21	1.49
16710804--16710853	21	2.4	21	86	6	66	62	10	4	24	1.44
16710815--16710861	21	2.2	21	92	0	76	63	6	6	23	1.41
16711237--16711289	26	2.0	26	92	0	88	30	24	18	26	1.98
16712130--16712182	25	2.1	26	89	3	81	30	24	15	30	1.95
16713924--16713976	26	2.0	26	88	0	79	28	22	18	30	1.98
16710815--16714758	891	4.4	898	86	3	5029	26	24	23	25	2.00
16716391--16716452	23	2.5	25	74	15	65	29	22	20	27	1.99
16714769--16716833	902	2.3	895	80	8	2237	26	23	23	25	2.00
16717992--16718886	454	2.0	452	85	2	1233	27	26	23	22	1.99
16718445--16723446	898	5.7	861	84	5	6086	25	24	24	25	2.00
16720576--16720628	26	2.0	26	92	0	88	28	24	20	26	1.99
16722129--16722158	4	7.5	4	100	0	60	0	73	26	0	0.84
16726575--16726625	26	2.0	26	92	0	84	25	27	17	29	1.98
16726943--16726983	20	2.0	21	85	4	57	26	26	24	21	2.00
16727056--16727100	3	15.0	3	90	9	74	31	0	0	68	0.89
16727146--16727188	17	2.3	19	84	11	54	32	2	4	60	1.30
16728304--16728379	11	7.7	10	78	15	52	14	5	1	78	0.98
16728303--16728384	6	13.7	6	74	13	62	14	4	1	79	0.96
16728303--16728371	17	4.2	17	71	18	58	13	4	1	81	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16728303--16728384	27	3.0	25	80	16	83	14	4	1	79	0.96
16728343--16728389	17	2.8	16	87	6	58	17	4	0	78	0.90
16728427--16728684	58	4.5	56	88	6	390	44	8	15	32	1.75
16728392--16728684	59	5.0	58	86	7	371	45	8	13	32	1.73
16732600--16732638	11	3.6	11	82	6	53	84	0	15	0	0.62
16732602--16732638	10	3.6	10	89	7	56	86	0	13	0	0.57
16732601--16732648	18	2.7	18	84	12	64	83	0	14	2	0.74
16733862--16734242	41	9.1	42	86	9	516	23	17	22	35	1.95
16733862--16734242	81	4.6	83	90	7	564	23	17	22	35	1.95
16734249--16734313	12	5.5	12	79	15	64	84	15	0	0	0.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195