genome.fa.s112.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  90  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16734256--16734314	9	6.3	9	85	14	68	86	13	0	0	0.57
16734249--16734312	21	3.0	20	84	13	83	84	15	0	0	0.63
16734250--16734314	24	2.8	24	86	11	98	86	13	0	0	0.58
16734249--16734312	33	1.9	34	90	9	105	84	15	0	0	0.63
16734249--16734314	11	6.0	11	79	16	75	84	15	0	0	0.61
16734251--16734314	14	4.8	14	77	16	73	85	14	0	0	0.59
16734477--16734519	17	2.5	17	76	0	50	4	11	4	79	1.04
16734587--16734630	19	2.3	18	82	17	54	36	0	2	61	1.09
16734572--16734622	15	3.4	16	79	10	56	35	0	5	58	1.22
16734690--16734734	18	2.4	18	81	3	54	22	8	4	64	1.40
16734661--16734720	24	2.4	25	81	13	61	21	5	3	70	1.22
16735520--16735666	5	29.0	5	71	19	65	19	4	3	72	1.18
16735520--16735613	14	6.8	14	72	10	77	23	1	4	71	1.10
16735521--16735556	18	1.9	19	94	5	65	16	0	2	80	0.83
16735585--16735666	33	2.6	32	77	14	89	13	8	2	75	1.13
16736794--16745603	902	9.8	900	84	4	10746	25	24	24	25	2.00
16741941--16741993	26	2.0	26	89	7	81	26	24	20	28	1.99
16743708--16743760	26	2.0	26	92	0	88	30	26	16	26	1.97
16744612--16744664	26	2.0	26	88	0	79	24	24	18	32	1.97
16745508--16745560	26	2.0	26	92	0	88	28	24	18	28	1.98
16746317--16746368	26	2.0	26	96	0	95	28	26	17	26	1.97
16747203--16747263	21	2.9	21	80	7	70	60	11	4	22	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16747203--16747303	11	9.6	10	71	7	58	59	9	5	24	1.52
16747204--16747274	32	2.2	32	87	2	99	60	11	4	23	1.48
16747246--16747304	21	2.8	20	85	10	73	59	8	6	25	1.51
16747680--16747732	26	2.0	26	85	7	72	30	20	18	30	1.97
16748582--16748634	26	2.0	26	92	0	88	28	24	18	28	1.98
16747289--16749508	902	2.5	899	87	3	3146	26	25	23	25	2.00
16749830--16749882	26	2.0	26	96	0	97	26	18	26	28	1.98
16749509--16753783	898	4.9	864	83	6	4664	25	24	24	25	2.00
16751600--16751652	26	2.0	26	96	0	97	28	20	24	26	1.99
16756080--16756143	26	2.5	26	89	0	101	29	20	21	28	1.98
16756973--16757025	26	2.0	26	92	0	88	24	18	26	30	1.98
16755523--16757762	890	2.5	894	85	4	2987	25	23	23	27	2.00
16758548--16758600	26	2.0	26	92	0	88	28	18	24	28	1.98
16759467--16762094	873	3.0	863	83	6	3031	25	24	23	25	2.00
16762279--16762341	17	3.7	17	75	22	53	31	1	3	63	1.19
16762292--16762334	17	2.3	19	84	11	54	32	2	2	62	1.20
16763437--16763504	17	3.9	17	70	16	59	13	4	1	80	0.92
16763445--16763505	11	5.9	10	75	12	61	13	3	1	81	0.88
16763477--16763518	7	6.1	7	81	15	52	16	2	0	80	0.81
16763437--16763518	6	13.7	6	76	13	71	14	4	1	79	0.96
16763526--16763947	58	7.0	60	83	9	463	45	9	13	31	1.75
16763610--16763947	65	5.5	63	85	7	432	43	9	14	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16767833--16767868	16	2.4	15	90	9	56	75	0	16	8	1.04
16767857--16767894	10	3.7	10	89	6	58	84	0	15	0	0.63
16767861--16767904	7	6.1	7	80	15	54	81	0	15	2	0.78
16767861--16767904	18	2.4	18	85	10	63	81	0	15	2	0.78
16767840--16767906	26	2.6	25	79	15	66	77	0	17	4	0.93
16769118--16769458	41	8.1	41	88	5	461	24	17	21	35	1.95
16769118--16769458	83	4.1	83	89	6	474	24	17	21	35	1.95
16769465--16769527	1	63.0	1	74	0	54	87	12	0	0	0.55
16769465--16769525	9	6.7	9	87	9	72	86	13	0	0	0.56
16769465--16769527	13	5.1	12	84	11	74	87	12	0	0	0.55
16769465--16769527	21	3.0	21	90	6	92	87	12	0	0	0.55
16769465--16769527	14	4.3	14	82	9	81	87	12	0	0	0.55
16769690--16769732	17	2.5	17	76	0	50	4	11	4	79	1.04
16769772--16769861	31	2.8	32	72	16	87	28	2	5	63	1.29
16769802--16769845	19	2.3	18	82	17	54	36	0	2	61	1.09
16769787--16769837	15	3.4	16	79	10	56	35	0	5	58	1.22
16769904--16769948	18	2.4	18	81	3	54	22	8	4	64	1.40
16769875--16769934	24	2.4	25	81	13	61	21	5	3	70	1.22
16770748--16770821	4	17.8	4	81	10	69	25	1	4	68	1.15
16770747--16770779	17	1.9	17	100	0	66	18	0	3	78	0.87
16770746--16770863	25	4.7	24	71	15	80	20	3	3	72	1.13
16770795--16770886	5	17.6	5	70	16	53	17	7	1	73	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16770846--16770887	22	1.9	22	90	9	68	16	11	0	71	1.14
16770894--16771248	59	6.0	59	87	5	488	45	8	12	34	1.71
16770894--16771248	119	3.0	118	88	5	497	45	8	12	34	1.71
16773011--16773063	26	2.0	26	96	0	97	28	24	20	26	1.99
16773867--16773919	26	2.0	26	92	0	88	28	20	22	28	1.99
16774760--16774812	26	2.0	26	92	0	88	28	24	20	26	1.99
16772141--16776402	901	4.8	890	84	6	5147	25	24	24	25	2.00
16776383--16776435	26	2.0	26	92	0	88	30	24	18	26	1.98
16775591--16777825	733	3.0	730	82	6	2218	27	24	22	26	2.00
16776590--16778080	747	2.0	750	87	2	2161	27	25	20	26	1.99
16778035--16778087	26	2.0	26	92	0	88	28	24	16	30	1.97
16777337--16779100	904	2.0	903	88	2	2626	26	25	22	25	2.00
16780213--16780265	26	2.0	26	96	0	97	28	26	18	26	1.98
16782898--16782950	26	2.0	26	96	0	97	28	24	20	26	1.99
16783786--16783838	26	2.0	26	88	0	79	32	24	16	26	1.97
16784690--16784742	26	2.0	26	92	0	88	30	26	16	26	1.97
16785589--16785641	26	2.0	26	92	0	88	30	26	16	26	1.97
16786481--16786533	26	2.0	26	92	0	88	28	28	18	24	1.98
16787384--16787434	26	2.0	26	88	0	75	29	25	17	27	1.98
16779635--16800961	901	23.7	889	79	8	19329	25	24	23	25	2.00
16789156--16789205	26	1.9	26	91	0	82	24	28	20	28	1.99
16790053--16790103	26	2.0	26	96	0	93	31	25	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16790839--16791209	185	2.0	185	86	1	510	21	26	28	23	1.99
16791128--16791180	26	2.0	26	88	0	79	28	22	20	28	1.99
16793774--16793826	26	2.0	26	96	0	97	28	26	18	26	1.98
16796463--16796515	26	2.0	26	92	0	88	26	22	20	30	1.98
16797351--16797403	26	2.0	26	92	0	88	30	26	16	26	1.97
16798250--16798300	26	2.0	26	92	0	84	27	25	13	33	1.94
16800917--16800987	26	2.7	26	91	0	106	29	25	16	28	1.97
16802488--16802539	26	2.0	26	96	0	95	30	25	15	28	1.96
16803362--16803414	26	2.0	26	96	0	97	24	26	22	26	2.00
16804261--16804313	26	2.0	26	96	0	97	26	22	22	28	1.99
16801609--16812442	888	12.2	900	83	5	12794	25	24	24	25	2.00
16806047--16806099	26	2.0	26	96	0	97	28	22	18	30	1.98
16808674--16808726	26	2.0	26	96	0	97	26	24	20	28	1.99
16809562--16809614	26	2.0	26	88	0	79	28	26	15	30	1.96
16810022--16810080	26	2.2	27	81	3	66	57	11	10	20	1.63
16810622--16810654	17	1.9	17	93	0	57	15	21	42	21	1.89
16814134--16814186	26	2.0	26	92	7	90	26	28	16	28	1.97
16815033--16815085	26	2.0	26	85	0	70	30	22	16	30	1.96
16817697--16817749	26	2.0	26	92	0	88	30	24	18	26	1.98
16813452--16818664	902	5.8	892	82	7	5650	25	24	24	25	2.00
16818590--16818641	25	2.0	26	92	3	88	26	23	21	28	1.99
16819086--16819522	244	1.8	240	89	2	685	20	24	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16819322--16824458	845	5.9	849	85	6	5463	24	24	24	25	2.00
16820895--16824521	897	4.1	899	85	4	4929	25	24	24	25	2.00
16822664--16822716	26	2.0	26	92	0	88	28	24	18	28	1.98
16823527--16823579	26	2.0	26	96	0	97	24	26	22	26	2.00
16822806--16824521	889	1.9	889	86	4	2349	25	24	23	25	2.00
16824432--16824484	26	2.0	26	96	0	97	28	26	18	26	1.98
16826296--16826348	26	2.0	26	88	0	79	28	24	15	32	1.95
16826685--16827473	416	1.9	420	87	3	1176	30	23	20	25	1.98
16828511--16828563	26	2.0	26	96	0	97	24	26	22	26	2.00
16828542--16830010	709	2.1	711	88	1	2176	26	24	23	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195