genome.fa.s112.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  118  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20456770--20459698	902	3.3	893	85	4	3888	25	24	25	25	2.00
20460615--20460665	26	2.0	26	96	0	93	29	25	17	27	1.98
20460911--20460962	26	2.0	26	88	0	77	26	17	25	30	1.97
20462712--20462763	26	2.0	26	96	0	95	26	17	26	28	1.97
20463597--20463649	26	2.0	26	92	0	88	32	18	22	26	1.97
20460870--20464530	903	4.1	901	86	3	5008	24	24	25	25	2.00
20464577--20464628	26	2.0	26	84	0	68	28	21	23	26	1.99
20466161--20466213	26	2.0	26	96	0	97	28	20	24	26	1.99
20466260--20466311	26	2.0	26	84	0	68	28	19	25	26	1.98
20466139--20466320	99	1.8	99	90	0	292	27	23	22	26	2.00
20464504--20471329	842	7.8	846	79	9	5848	25	23	24	26	2.00
20466997--20467055	26	2.3	26	88	5	95	25	18	27	28	1.98
20467896--20467953	26	2.2	27	96	3	109	25	20	25	27	1.99
20466286--20471329	885	5.6	891	87	3	6927	25	23	24	26	2.00
20469685--20469737	26	2.0	26	96	0	97	26	18	26	28	1.98
20470570--20470625	26	2.2	26	90	0	85	28	19	23	28	1.98
20471346--20472814	801	1.8	788	88	3	2266	25	21	25	27	1.99
20473017--20473070	26	2.1	26	92	0	90	29	20	24	25	1.99
20473889--20473941	26	2.0	26	96	0	97	26	18	26	28	1.98
20479194--20479246	26	2.0	26	92	0	88	28	18	24	28	1.98
20480099--20480149	26	2.0	26	88	0	75	31	17	21	29	1.96
20481001--20481056	26	2.2	26	96	0	103	26	21	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20479194--20483677	902	5.0	896	85	4	5522	25	24	24	25	2.00
20481907--20481958	26	2.0	26	96	0	95	28	19	25	26	1.98
20484094--20485158	533	2.0	533	96	0	1963	26	18	24	30	1.98
20486182--20486233	26	2.0	26	96	0	95	28	19	25	26	1.98
20487082--20487134	26	2.0	26	96	0	97	24	20	28	26	1.99
20484649--20488207	905	4.0	902	87	3	4905	24	23	25	26	2.00
20488015--20488361	159	2.2	159	87	0	487	20	29	30	19	1.97
20490161--20490212	26	2.0	26	96	0	95	26	17	26	28	1.97
20491065--20491117	26	2.1	25	89	3	79	30	20	26	22	1.98
20489421--20497820	903	9.4	898	85	4	10734	24	23	25	26	2.00
20494625--20494681	26	2.2	27	90	6	91	26	21	24	28	1.99
20495521--20495573	26	2.0	26	96	0	97	28	20	24	26	1.99
20499145--20499200	26	2.2	26	96	0	103	26	21	25	26	1.99
20500049--20500100	26	2.0	26	96	0	95	28	19	25	26	1.98
20498821--20501376	900	2.9	896	85	4	3412	25	24	24	24	2.00
20502244--20502297	26	2.0	27	96	3	101	25	22	25	25	2.00
20504009--20504060	26	2.0	26	96	0	95	28	19	25	26	1.98
20504907--20504959	26	2.0	26	96	0	97	24	20	28	26	1.99
20501376--20506031	903	5.2	903	86	4	6148	24	24	25	25	2.00
20505836--20506185	159	2.2	159	85	0	466	20	28	30	20	1.98
20507115--20507167	26	2.0	26	96	0	97	26	20	24	28	1.99
20508020--20508071	26	2.0	26	96	0	95	26	17	26	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20507002--20512727	900	6.4	903	87	3	7711	24	24	25	25	2.00
20508922--20508974	26	2.1	25	89	3	79	30	20	26	22	1.98
20512484--20512541	26	2.2	27	93	3	100	25	18	25	29	1.98
20513766--20513818	26	2.0	26	100	0	106	26	20	26	26	1.99
20515545--20515597	26	2.0	26	88	0	79	30	18	26	24	1.98
20517157--20517209	26	2.0	26	92	0	88	28	22	22	26	1.99
20518049--20518101	26	2.0	26	96	0	97	28	20	22	28	1.99
20516418--20520022	892	4.1	891	86	3	4777	25	24	24	25	2.00
20518946--20518998	26	2.0	26	96	0	97	28	20	24	26	1.99
20519812--20519864	26	2.0	26	96	0	97	26	18	26	28	1.98
20519988--20523014	883	3.4	888	85	3	3989	24	24	25	25	2.00
20522658--20522708	26	2.0	26	92	0	84	27	19	23	29	1.98
20524106--20524156	26	2.0	26	96	0	93	27	17	27	27	1.98
20526683--20526735	26	2.0	26	96	0	97	26	18	26	28	1.98
20527364--20527416	26	2.0	26	96	0	97	28	20	24	26	1.99
20528197--20528249	26	2.0	26	100	0	106	26	20	26	26	1.99
20529591--20529641	26	2.0	26	92	0	84	29	17	25	27	1.98
20532069--20532121	26	2.0	26	92	7	90	28	20	22	28	1.99
20532412--20534767	870	2.7	876	83	7	2675	26	24	23	25	2.00
20534685--20534737	26	2.0	26	88	0	79	30	16	22	30	1.96
20534799--20539566	858	5.5	855	84	7	5761	25	24	24	26	2.00
20537029--20537081	26	2.0	26	92	0	88	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20538975--20540115	598	1.9	597	90	1	1811	25	21	23	28	1.99
20540258--20540310	26	2.0	26	88	0	79	30	22	24	22	1.99
20542738--20542790	26	2.0	26	96	0	97	26	18	26	28	1.98
20545430--20545480	26	2.0	26	96	0	93	29	19	25	25	1.99
20542007--20554599	887	14.1	900	86	3	15805	25	24	24	25	2.00
20546329--20546407	26	3.0	26	100	0	158	30	20	22	26	1.98
20548112--20548162	26	2.0	26	92	0	84	31	19	23	25	1.98
20549895--20549947	26	2.0	26	96	0	97	26	18	26	28	1.98
20550784--20550834	26	2.0	26	96	0	93	29	19	23	27	1.98
20552562--20552614	26	2.0	26	96	0	97	28	16	24	30	1.97
20554776--20554828	26	2.0	26	89	7	81	24	16	28	30	1.97
20554802--20558255	876	4.0	869	85	2	4611	25	24	24	25	2.00
20559052--20559104	26	2.0	26	92	0	88	24	20	26	28	1.99
20558274--20560743	904	2.7	899	87	3	3457	25	23	25	25	2.00
20562233--20562285	26	2.0	26	100	0	106	26	16	26	30	1.97
20563918--20563970	26	2.0	26	100	0	106	26	20	26	26	1.99
20563133--20566377	897	3.6	890	86	3	4412	25	23	24	26	2.00
20565708--20565760	26	2.0	26	92	0	88	28	18	24	28	1.98
20567160--20567212	26	2.0	26	88	0	79	26	22	24	26	2.00
20568056--20568134	26	3.0	26	96	0	149	26	21	25	26	1.99
20568982--20569033	25	2.0	26	96	3	97	26	21	25	26	1.99
20569885--20569936	26	2.0	26	92	0	86	30	19	23	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20566376--20573159	903	7.5	901	84	4	8243	25	24	24	26	2.00
20570793--20570870	25	3.1	25	96	1	138	28	21	24	25	1.99
20571712--20571764	26	2.0	26	96	0	97	28	20	24	26	1.99
20572542--20572581	17	2.4	17	95	0	71	27	45	22	5	1.73
20572613--20572665	26	2.0	26	96	0	97	26	18	26	28	1.98
20573442--20573494	26	2.0	26	96	0	97	26	18	26	28	1.98
20575179--20575231	26	2.0	26	96	0	97	28	20	24	26	1.99
20576052--20576104	26	2.0	26	92	0	88	28	18	24	28	1.98
20576946--20576998	26	2.0	26	92	0	88	30	20	22	26	1.98
20577841--20577893	26	2.0	26	88	0	79	28	16	24	30	1.97
20574276--20578390	895	4.7	891	85	5	5247	24	24	25	26	2.00
20578657--20578709	26	2.0	26	96	0	97	28	20	24	26	1.99
20579554--20579605	26	2.0	26	92	0	86	26	19	25	28	1.98
20579812--20580311	252	2.0	253	91	1	824	24	16	23	36	1.95
20580293--20581652	689	2.0	689	88	1	2053	26	24	24	25	2.00
20582786--20582838	26	2.0	26	100	0	106	26	20	26	26	1.99
20583685--20583737	26	2.0	26	92	0	88	28	16	26	28	1.97
20581910--20588131	868	7.0	889	85	4	7767	25	24	24	25	2.00
20584562--20584614	26	2.0	26	85	7	72	24	20	24	30	1.99
20585462--20585514	26	2.0	26	92	0	88	28	20	22	28	1.99
20586336--20586388	26	2.0	26	92	0	88	28	18	24	28	1.98
20587204--20587256	26	2.0	26	88	0	79	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20588821--20588871	26	2.0	26	88	0	75	31	17	23	27	1.97
20590400--20590452	26	2.0	26	96	0	97	26	20	24	28	1.99
20591250--20591302	26	2.0	26	85	0	70	30	16	24	28	1.97
20592153--20592202	26	1.9	26	95	0	91	30	20	26	24	1.98
20592994--20593046	26	2.0	26	96	0	97	28	20	24	26	1.99
20593899--20593951	26	2.0	26	96	0	97	26	22	24	26	2.00
20595677--20595728	26	2.0	26	96	0	95	28	15	25	30	1.96
20596567--20596619	26	2.0	26	92	7	90	28	20	22	28	1.99
20597469--20597520	26	2.0	25	92	3	86	26	15	28	28	1.96
20592568--20598394	890	6.5	903	86	3	7701	25	24	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195