genome.fa.s112.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  116  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20163483--20166970	911	3.9	904	86	5	4690	25	24	24	25	2.00
20166194--20169398	715	4.5	714	90	2	4735	26	24	24	25	2.00
20171878--20171930	26	2.0	26	92	0	88	28	22	20	28	1.99
20171161--20174430	905	3.6	900	87	2	4554	26	24	23	25	2.00
20173466--20173497	4	8.0	4	92	0	55	3	75	21	0	0.95
20173679--20173731	26	2.0	26	92	0	88	28	24	18	28	1.98
20174964--20175013	26	1.9	26	87	0	73	30	26	18	26	1.98
20175863--20175915	26	2.0	26	85	0	70	26	26	16	30	1.97
20177206--20177258	26	2.0	26	92	0	88	30	26	16	26	1.97
20178106--20178158	26	2.0	26	92	0	88	28	24	20	26	1.99
20178391--20181730	895	3.8	888	86	4	4383	25	24	23	25	2.00
20180966--20182440	706	2.1	709	87	2	2147	26	24	22	26	2.00
20182574--20182624	26	2.0	26	100	0	102	25	27	19	27	1.99
20183474--20183526	26	2.0	26	88	0	79	28	24	20	26	1.99
20181812--20184407	899	2.9	899	86	2	3591	26	24	23	25	2.00
20184555--20184607	26	2.0	26	88	0	79	26	24	20	28	1.99
20186893--20186945	26	2.0	26	92	0	88	26	24	20	28	1.99
20187792--20187844	26	2.0	26	92	0	88	28	24	18	28	1.98
20186874--20189758	900	3.2	891	84	5	3723	25	24	24	25	2.00
20189158--20189215	26	2.2	26	81	9	64	62	8	6	22	1.48
20190346--20190403	25	2.3	25	94	5	100	25	25	22	25	2.00
20191247--20191299	26	2.0	26	92	0	88	30	24	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20191380--20191412	11	3.0	11	95	0	57	18	30	36	15	1.91
20192676--20193788	556	2.0	554	83	2	1419	21	26	28	23	1.99
20195369--20195420	26	2.0	26	92	0	86	28	25	17	28	1.97
20196272--20196322	26	2.0	26	84	0	66	27	27	15	29	1.96
20193231--20217165	903	26.1	903	75	10	15838	25	24	24	25	2.00
20200716--20200768	26	2.0	26	89	7	81	30	24	18	26	1.98
20200961--20201012	26	2.0	26	92	0	86	28	21	17	32	1.96
20200726--20201203	244	2.0	244	83	3	604	19	23	32	24	1.98
20203838--20203869	12	2.7	12	95	0	55	12	34	18	34	1.89
20206294--20206346	26	2.0	26	88	0	79	24	22	22	30	1.99
20207381--20207433	26	2.0	26	96	0	97	26	24	20	28	1.99
20210256--20210311	26	2.2	26	100	0	112	28	25	19	26	1.99
20211161--20211213	26	2.0	26	88	0	79	28	26	18	26	1.98
20212945--20212997	26	2.0	26	88	0	79	22	24	24	28	2.00
20216477--20216529	26	2.0	26	96	0	97	32	26	15	26	1.95
20216568--20217755	590	2.0	594	89	1	1841	28	22	22	26	1.99
20217972--20218050	26	3.0	26	100	0	158	26	26	20	26	1.99
20219791--20219841	26	2.0	26	92	0	84	29	27	13	29	1.94
20217163--20220794	926	4.0	886	85	5	4536	25	24	24	26	2.00
20221123--20221173	26	2.0	26	88	7	77	29	25	15	29	1.96
20221810--20221842	16	2.1	16	94	0	57	3	66	24	6	1.28
20222020--20222072	26	2.0	26	88	0	79	30	24	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20222907--20222956	26	1.9	26	87	0	73	22	22	22	34	1.97
20223046--20223628	291	2.0	292	89	3	888	23	21	25	29	1.99
20224100--20224153	26	2.1	26	85	0	72	27	18	24	29	1.98
20223338--20228471	876	5.8	875	85	3	6135	26	24	23	25	2.00
20227622--20227674	26	2.0	26	88	0	79	30	24	13	32	1.93
20226745--20228471	901	1.9	904	87	1	2509	26	24	23	25	2.00
20227879--20229036	588	2.0	588	88	2	1707	30	24	19	25	1.98
20230840--20230892	26	2.0	26	96	0	97	26	26	18	28	1.98
20231743--20231795	26	2.0	26	88	0	79	28	22	18	30	1.98
20229968--20233451	889	3.9	888	86	3	4579	26	24	24	25	2.00
20233321--20233650	171	1.9	171	83	1	419	20	30	27	20	1.98
20234587--20234637	26	2.0	26	96	0	93	27	27	17	27	1.98
20234851--20234903	26	2.0	26	96	0	97	28	26	18	26	1.98
20234406--20234901	260	1.9	260	84	3	654	20	28	26	24	1.99
20237545--20237594	26	1.9	26	95	0	91	24	24	22	30	1.99
20234638--20240876	909	7.0	896	84	5	7656	25	24	23	25	2.00
20240213--20240263	26	2.0	26	92	0	84	31	27	11	29	1.92
20248292--20248342	26	2.0	26	92	0	84	23	27	19	29	1.98
20249872--20249925	26	2.1	26	85	0	72	22	25	22	29	1.99
20250754--20250806	26	2.0	26	96	0	97	26	20	22	30	1.98
20250076--20251702	857	1.9	855	88	1	2490	26	24	23	24	2.00
20251611--20251662	25	2.0	26	96	3	97	26	26	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20252120--20252172	26	2.0	26	96	0	97	28	26	18	26	1.98
20252154--20254820	874	3.0	869	85	5	3567	26	24	23	25	2.00
20253895--20253944	26	1.9	26	95	0	91	32	26	14	28	1.94
20253028--20254986	897	2.2	899	87	3	2762	26	24	23	25	2.00
20254794--20254846	26	2.0	26	92	0	88	28	24	18	28	1.98
20255097--20262079	893	7.8	897	85	4	8823	26	24	23	25	2.00
20257776--20257828	26	2.0	26	88	0	79	28	22	18	30	1.98
20260452--20260504	26	2.0	26	96	0	97	26	28	20	24	1.99
20261337--20261386	26	1.9	26	100	0	100	26	26	20	28	1.99
20263191--20266557	878	3.8	871	84	5	4358	25	25	23	25	2.00
20264757--20264814	26	2.2	26	90	3	89	27	25	20	25	1.99
20266534--20266583	25	2.0	26	92	4	84	34	24	12	30	1.91
20270056--20270108	26	2.0	26	92	0	88	26	22	22	28	1.99
20269196--20275496	904	7.1	900	84	4	7847	25	24	23	25	2.00
20274522--20274574	26	2.0	26	96	0	97	26	24	18	30	1.98
20275259--20275666	185	2.2	184	84	3	518	21	26	28	22	1.99
20275602--20275654	26	2.0	26	92	0	88	26	24	22	26	2.00
20276923--20277049	67	1.9	67	95	0	227	14	25	29	29	1.95
20277815--20277867	26	2.0	26	92	0	88	28	24	18	28	1.98
20278712--20278764	26	2.0	26	92	0	88	28	24	16	30	1.97
20276990--20283060	902	6.7	902	74	11	4924	26	24	23	25	2.00
20280237--20280287	26	2.0	26	96	0	93	25	25	19	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20280421--20280473	26	2.0	26	92	0	88	30	20	18	30	1.97
20280078--20280678	185	3.3	184	83	1	729	22	26	27	23	1.99
20280606--20280658	26	2.0	26	96	0	97	26	24	20	28	1.99
20283193--20283244	26	2.0	25	88	3	77	26	25	19	28	1.98
20283111--20285938	899	3.2	895	84	4	3664	25	25	23	25	2.00
20286265--20286315	26	2.0	26	92	0	84	25	21	23	29	1.99
20285564--20286318	394	1.9	390	84	4	993	22	29	24	23	1.99
20285954--20288133	894	2.4	894	85	4	2923	25	25	23	24	2.00
20288462--20288514	26	2.0	26	96	0	97	24	26	22	26	2.00
20287756--20288535	402	2.0	393	83	4	1001	22	29	24	23	1.99
20291115--20291167	26	2.0	26	96	0	97	28	22	18	30	1.98
20289358--20297262	903	8.7	900	73	11	5511	26	24	24	25	2.00
20293164--20293216	26	2.0	26	96	0	97	24	26	22	26	2.00
20293242--20294707	770	1.9	769	89	1	2242	27	23	22	25	2.00
20295690--20295742	26	2.0	26	85	0	70	26	22	18	32	1.97
20299008--20299060	26	2.0	26	92	0	88	28	24	20	26	1.99
20299483--20299539	25	2.2	26	81	6	62	57	7	10	24	1.56
20297261--20300826	892	4.0	895	85	3	4630	25	24	24	25	2.00
20301304--20301356	26	2.0	26	85	0	70	28	24	18	28	1.98
20302204--20302256	26	2.0	26	88	0	79	28	26	18	26	1.98
20303103--20303155	26	2.0	26	96	0	97	30	26	15	28	1.96
20300869--20304207	899	3.7	893	84	3	4212	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20303998--20304050	26	2.0	26	85	0	70	30	20	18	30	1.97
20304482--20304534	26	2.0	26	100	0	106	26	26	20	26	1.99
20305382--20305434	26	2.0	26	88	0	79	30	24	16	28	1.97
20307184--20307236	26	2.0	26	92	0	88	28	24	18	28	1.98
20304203--20312324	900	9.0	903	80	7	8496	25	25	24	25	2.00
20309698--20310086	186	2.1	184	85	1	519	22	27	26	23	2.00
20310853--20310904	26	2.0	26	88	7	79	26	25	17	30	1.97
20311919--20312728	404	2.0	404	87	1	1176	32	19	19	29	1.96
20313024--20313076	26	2.0	26	100	0	106	26	26	20	26	1.99
20313930--20313982	26	2.0	26	85	0	70	28	20	20	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195