Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  47  of  195  ( 23297 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9763841--9764108
145
1.9
142
88
3
403
43
8
9
38
1.68
9768074--9768337
145
1.8
144
83
2
350
44
7
8
39
1.64
9768107--9768376
145
1.9
145
80
6
323
43
8
7
40
1.63
9768994--9769021
2
14.0
2
100
0
56
50
0
0
50
1.00
9770046--9770077
2
16.0
2
100
0
64
50
0
0
50
1.00
9776180--9776246
33
2.0
33
94
0
116
38
22
13
25
1.90
9779166--9779379
108
2.0
108
99
0
419
44
8
5
41
1.58
9788627--9788698
18
3.8
20
83
14
107
40
5
9
44
1.61
9788050--9789275
615
2.0
613
95
0
2195
33
18
12
36
1.88
9786920--9789820
577
5.0
577
91
4
4733
32
18
12
35
1.89
9793366--9793410
2
22.5
2
90
0
72
44
4
0
51
1.21
9793506--9793552
13
3.5
13
82
8
58
51
0
2
46
1.13
9793657--9793700
12
3.5
12
84
6
52
50
4
2
43
1.35
9795014--9795069
29
1.9
29
88
0
85
37
5
0
57
1.22
9797613--9797646
2
17.0
2
100
0
68
0
50
0
50
1.00
9799085--9799352
145
1.9
142
88
3
403
43
8
9
38
1.68
9803319--9803601
145
2.0
144
82
3
354
44
7
8
39
1.63
9805279--9805312
2
17.0
2
100
0
68
50
0
0
50
1.00
9811415--9811481
33
2.0
33
94
0
116
38
22
13
25
1.90
9814066--9814179
57
2.0
57
81
6
133
62
6
6
25
1.42
9817711--9817757
22
2.2
22
85
7
62
74
0
17
8
1.05
9818150--9818174
12
2.1
12
100
0
50
24
44
16
16
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9833323--9833389
34
2.0
34
96
0
125
43
8
13
34
1.75
9843194--9843221
11
2.5
11
100
0
56
46
0
10
42
1.38
9843475--9843512
20
2.0
19
85
10
51
60
10
0
28
1.30
9844917--9844987
37
1.9
36
85
2
97
35
14
8
42
1.75
9846316--9846400
34
2.5
34
94
0
143
49
20
12
17
1.79
9846953--9847020
31
2.2
31
82
7
84
52
16
16
14
1.74
9846973--9847137
66
2.5
66
81
2
188
46
15
20
16
1.84
9849992--9850022
16
2.0
16
93
6
55
61
0
32
6
1.21
9850393--9850753
58
6.0
59
74
14
265
46
5
12
35
1.65
9854635--9854716
9
8.9
9
77
15
60
74
0
14
10
1.07
9854631--9854706
10
8.0
10
81
14
72
71
0
15
13
1.16
9854636--9854714
19
4.2
19
78
12
83
75
0
12
11
1.04
9855677--9855887
21
9.3
21
67
16
100
38
8
13
39
1.76
9855682--9856136
46
10.0
46
77
11
397
37
9
14
38
1.78
9855733--9856090
71
5.3
71
74
16
283
37
9
14
39
1.78
9855907--9856140
25
9.8
25
74
12
197
36
8
15
39
1.79
9856360--9856408
21
2.3
21
89
6
73
38
10
14
36
1.80
9856603--9856724
42
2.9
42
75
6
129
24
9
20
45
1.79
9856593--9856889
89
3.4
88
81
6
336
27
10
19
42
1.85
9856691--9856832
44
3.2
44
68
11
119
26
9
17
46
1.78
9857698--9857727
11
2.7
11
94
0
51
43
0
6
50
1.28
9858363--9858541
60
3.1
57
81
7
209
50
5
10
34
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9858342--9858534
58
3.3
59
82
7
232
47
6
10
36
1.63
9858531--9858663
60
2.2
63
78
13
152
46
9
14
30
1.75
9858551--9858715
61
2.8
60
77
14
162
43
7
13
35
1.72
9875477--9875541
3
22.7
3
83
9
82
33
3
0
63
1.10
9875442--9875541
21
4.6
21
75
13
69
35
5
1
59
1.26
9876406--9876443
14
2.7
14
91
0
58
10
5
0
84
0.77
9876450--9876493
13
3.4
12
81
12
52
20
2
2
75
1.03
9876561--9876593
15
2.2
15
94
0
57
51
15
0
33
1.43
9876540--9876593
16
3.4
16
79
5
56
57
11
1
29
1.44
9876654--9876775
60
2.0
60
91
0
199
39
13
10
36
1.80
9877398--9877477
37
2.2
38
78
13
96
20
12
6
61
1.52
9887215--9887248
10
3.4
10
92
8
52
82
0
14
2
0.79
9888019--9888567
118
4.6
118
75
5
410
21
19
12
46
1.83
9888998--9889104
5
20.2
5
76
12
81
37
3
2
56
1.32
9889050--9889108
3
21.7
3
79
19
67
35
0
1
62
1.05
9888980--9889108
15
9.1
14
69
17
70
35
3
3
56
1.36
9890085--9890119
17
2.1
17
89
10
54
57
8
0
34
1.29
9890139--9890173
17
2.1
17
100
0
70
54
11
0
34
1.37
9894937--9894970
2
17.0
2
93
0
59
2
50
0
47
1.16
9900043--9900075
6
5.5
6
100
0
66
15
48
18
18
1.81
9918304--9918358
21
2.8
20
84
10
69
60
1
1
36
1.18
9918555--9918605
19
2.8
19
75
13
54
41
0
0
58
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9923504--9923533
4
7.5
4
100
0
60
50
0
0
50
1.00
9923842--9923897
24
2.5
24
86
13
68
30
14
10
44
1.79
9923853--9923900
24
2.0
24
100
0
96
29
16
12
41
1.85
9924610--9924691
24
3.5
24
76
15
73
40
4
2
52
1.36
9924817--9924863
21
2.2
22
92
3
78
34
4
2
59
1.29
9925041--9925111
28
2.5
28
76
13
74
56
2
1
39
1.23
9925094--9925129
18
1.9
19
88
5
56
66
0
2
30
1.06
9925367--9925408
9
4.7
9
80
11
50
54
2
0
42
1.13
9942417--9942488
30
2.4
31
85
2
110
30
6
6
55
1.53
9942749--9942797
19
2.4
20
86
10
64
46
4
4
44
1.41
9953442--9953502
32
1.9
32
100
0
122
21
11
8
59
1.58
9953448--9953500
16
3.3
16
72
27
58
22
11
7
58
1.57
9953448--9953509
16
3.9
16
72
16
56
20
11
8
59
1.57
9954425--9954476
25
2.1
25
96
0
95
50
0
34
15
1.45
9956065--9956094
2
15.0
2
92
0
51
46
0
3
50
1.18
9958459--9959008
269
2.0
269
90
1
870
45
8
5
41
1.57
9959124--9959672
271
2.0
271
90
4
863
45
8
4
41
1.55
9959421--9960746
657
2.0
668
87
5
1939
39
8
6
45
1.60
9960425--9960500
32
2.4
31
86
6
100
32
7
13
46
1.72
9962586--9962974
58
6.7
58
90
3
529
38
12
5
42
1.68
9964867--9964911
10
4.4
10
94
2
72
17
2
0
80
0.82
9965159--9965367
44
4.7
45
87
4
300
44
19
16
20
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9965237--9965578
41
8.1
42
78
6
264
44
20
12
22
1.85
9965395--9965578
84
2.2
84
86
2
255
45
19
10
23
1.82
9965855--9965957
43
2.4
45
79
9
115
34
16
10
37
1.83
9966593--9966733
63
2.2
63
87
0
210
29
24
10
34
1.89
9967410--9967445
11
3.0
12
88
12
56
5
11
0
83
0.80
9971426--9971641
58
3.7
58
88
6
296
37
12
5
44
1.65
9971426--9971644
59
3.8
59
86
7
295
38
11
5
43
1.65
9974363--9974412
17
2.9
17
82
11
66
54
4
0
42
1.19
9974926--9974970
21
2.1
21
91
0
72
35
8
0
55
1.31
9978195--9978226
15
2.1
15
94
0
55
34
6
12
46
1.67
9986410--9986485
10
7.4
10
76
4
53
59
3
2
34
1.30
9986410--9986461
20
2.5
20
81
9
61
53
3
3
38
1.37
9986412--9986462
21
2.5
20
80
3
57
54
3
3
37
1.37
9986653--9986692
16
2.4
16
87
4
53
40
0
2
57
1.12
9986624--9986704
18
4.4
18
68
18
51
34
2
2
60
1.23
9986666--9986704
17
2.4
16
86
4
51
33
0
2
64
1.08
9986817--9986860
21
2.1
21
83
4
54
27
0
11
61
1.30
10004078--10004138
30
2.0
31
83
3
79
18
24
19
37
1.94
10023397--10023435
19
2.0
20
85
9
55
51
2
0
46
1.14
10032393--10032431
19
2.2
18
86
9
53
41
12
7
38
1.72
10033411--10033479
35
2.0
35
100
0
138
36
20
11
31
1.88
10041316--10041380
31
2.1
32
85
8
89
52
10
4
32
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10042764--10042867
7
15.7
7
67
15
60
71
11
0
16
1.20
10042764--10042840
20
3.8
20
74
15
70
68
10
1
19
1.25
10042768--10042851
40
2.2
38
82
18
102
69
11
1
17
1.25
10042825--10042860
18
2.0
18
88
0
54
77
11
0
11
0.99
10045200--10045251
11
4.5
11
75
15
52
82
11
1
3
0.88
10056045--10056144
52
1.9
51
88
6
148
26
17
22
35
1.95
10056091--10056267
95
1.9
96
83
5
234
29
14
19
36
1.91
10056055--10056614
48
11.4
50
77
12
361
28
13
20
37
1.90
10056293--10056683
49
8.0
49
78
9
358
28
10
19
40
1.86
10056302--10056586
141
2.0
140
85
4
376
28
11
21
39
1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195