genome.fa.s112.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  103  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18399306--18399362	18	3.1	18	68	12	53	70	0	8	21	1.14
18399464--18399606	27	5.1	27	68	23	100	66	2	2	28	1.17
18399440--18399606	38	4.6	35	72	19	121	67	2	2	26	1.17
18401636--18401687	25	2.0	26	92	3	88	28	19	25	26	1.98
18402479--18402531	26	2.0	26	92	0	88	28	18	24	28	1.98
18403345--18403397	26	2.0	26	92	0	88	28	15	24	32	1.95
18403780--18403831	26	2.0	26	96	0	95	28	17	23	30	1.97
18405560--18405617	26	2.2	27	90	3	91	25	17	25	31	1.97
18407356--18407408	26	2.0	26	92	0	88	30	20	24	24	1.99
18403584--18409703	905	6.8	902	85	3	7614	25	24	24	25	2.00
18409942--18409994	26	2.0	26	92	0	88	26	16	24	32	1.97
18414807--18414911	52	2.0	52	100	0	210	24	13	25	36	1.92
18415298--18415377	26	3.1	26	96	0	142	27	20	26	26	1.99
18409711--18424139	872	16.3	895	82	7	15324	25	24	24	25	2.00
18419302--18419355	26	2.1	25	86	3	72	20	5	18	55	1.62
18420627--18420679	26	2.0	26	85	0	70	26	18	22	32	1.97
18425694--18425746	26	2.0	26	96	0	97	28	20	24	26	1.99
18425989--18427467	499	3.0	495	75	10	1572	27	21	21	30	1.98
18429395--18429447	26	2.0	26	96	0	97	26	20	24	28	1.99
18426987--18432157	893	5.8	901	87	3	7003	25	23	24	26	2.00
18430299--18430351	26	2.0	26	96	0	97	28	20	24	26	1.99
18432362--18432408	20	2.3	21	88	3	69	23	4	8	63	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18432361--18432419	20	2.7	22	79	10	68	22	3	10	64	1.39
18433605--18433655	26	2.0	26	92	0	84	29	17	23	29	1.97
18435362--18435412	26	2.0	26	96	0	93	27	13	29	29	1.94
18436246--18436298	26	2.0	26	88	0	79	26	16	26	30	1.97
18433011--18439017	885	6.8	884	88	3	7983	25	24	24	26	2.00
18437130--18437182	26	2.0	26	85	7	72	26	16	24	32	1.97
18440267--18440319	26	2.0	26	92	7	90	26	16	28	28	1.97
18441106--18441139	15	2.3	15	100	0	68	26	38	26	8	1.85
18441167--18441218	26	2.0	26	92	0	86	28	19	26	25	1.98
18439620--18444542	869	5.6	880	84	5	6056	25	23	24	25	2.00
18443805--18445298	769	2.0	753	87	4	2149	25	22	25	25	2.00
18445429--18445481	26	2.0	26	92	0	88	24	22	28	24	2.00
18448129--18448179	26	2.0	26	96	0	93	27	19	23	29	1.98
18449897--18449949	26	2.0	26	92	0	88	26	13	26	33	1.93
18450808--18450861	27	2.0	26	89	10	83	25	22	24	27	2.00
18452580--18452632	26	2.0	26	88	0	79	26	22	26	24	2.00
18444558--18459250	903	16.3	896	81	7	15459	25	24	25	25	2.00
18454354--18454406	26	2.0	26	88	0	79	28	20	24	26	1.99
18455354--18455404	26	2.0	26	96	0	93	25	15	27	31	1.96
18455579--18455603	4	6.2	4	100	0	50	0	24	76	0	0.80
18456249--18456307	26	2.3	26	85	5	86	27	18	25	28	1.98
18454885--18459250	902	4.9	900	85	4	5757	24	24	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18457157--18457207	26	2.0	26	92	0	84	31	19	21	27	1.97
18458931--18458981	26	2.0	26	92	0	84	31	13	25	29	1.94
18459670--18459722	26	2.0	26	92	0	88	28	18	24	28	1.98
18458503--18460001	740	2.0	740	85	5	2000	25	24	26	23	2.00
18460586--18460636	26	1.9	27	96	4	95	29	19	27	23	1.98
18462668--18462746	26	3.0	26	89	7	124	26	18	25	29	1.98
18461839--18463827	904	2.2	897	85	5	2686	24	25	25	24	2.00
18463598--18463653	26	2.2	26	90	0	85	28	17	21	32	1.96
18464157--18464209	26	2.0	26	100	0	106	26	20	26	26	1.99
18463301--18464372	559	1.9	560	87	1	1592	24	28	27	20	1.99
18466394--18466446	26	2.0	26	85	0	70	30	20	20	28	1.98
18466637--18468122	732	2.0	731	87	0	2157	25	22	24	27	2.00
18468023--18468073	26	2.0	26	92	7	86	27	17	27	27	1.98
18468915--18468967	26	2.0	26	96	0	97	28	20	24	26	1.99
18469813--18469876	26	2.5	26	100	0	128	25	20	25	29	1.99
18470734--18470786	26	2.0	26	92	0	88	26	16	28	28	1.97
18467369--18471595	904	4.7	903	86	3	5582	24	23	25	26	2.00
18472999--18475198	716	3.1	716	89	1	3242	26	23	23	26	2.00
18476060--18476110	26	2.0	26	100	0	102	27	19	27	25	1.99
18474423--18479290	919	5.4	895	84	5	5845	25	23	24	26	2.00
18476827--18476861	17	2.1	17	94	0	61	25	42	17	14	1.86
18478786--18478837	26	2.0	25	96	3	95	26	19	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18479663--18479715	26	2.0	26	100	0	106	26	20	26	26	1.99
18480202--18480254	26	2.0	26	100	0	106	26	20	26	26	1.99
18479329--18480349	539	1.9	539	86	0	1477	25	26	26	21	2.00
18481094--18481151	26	2.3	26	90	3	91	24	25	22	27	2.00
18479851--18482924	904	3.4	894	86	2	4188	25	24	24	25	2.00
18481996--18482055	26	2.4	26	88	5	88	30	20	23	26	1.98
18483611--18483663	26	2.0	26	92	0	88	28	18	24	28	1.98
18484515--18484567	26	2.0	26	96	0	97	30	20	24	24	1.99
18485410--18485481	26	2.8	26	91	0	117	30	18	23	27	1.97
18482897--18489165	902	6.9	897	84	5	7480	25	24	24	25	2.00
18488135--18488211	26	3.0	26	96	0	145	27	18	25	28	1.98
18486337--18489082	895	3.0	904	81	6	2946	26	23	23	25	2.00
18489030--18489082	26	2.0	26	96	0	97	28	20	24	26	1.99
18489841--18489891	26	2.0	26	96	0	93	33	19	21	25	1.97
18490995--18491047	26	2.0	26	92	0	88	28	18	24	28	1.98
18491432--18491490	26	2.4	24	80	5	64	25	6	18	49	1.72
18492750--18492802	26	2.0	26	96	0	97	26	18	26	28	1.98
18490904--18493677	877	3.1	876	82	8	3396	25	24	25	25	2.00
18494368--18494418	26	2.0	26	92	0	84	31	15	25	27	1.96
18496135--18496188	26	2.0	27	96	3	101	27	20	25	25	1.99
18497040--18497092	26	2.0	26	96	0	97	26	18	26	28	1.98
18495260--18497443	904	2.4	898	86	2	3177	25	23	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18497735--18497787	26	2.0	26	92	0	88	30	20	22	26	1.98
18497813--18498140	171	1.9	171	83	3	428	20	30	31	17	1.96
18499698--18499750	26	2.0	26	96	0	97	28	20	24	26	1.99
18497920--18500625	904	3.0	895	87	3	3651	25	23	25	25	2.00
18500025--18501803	586	3.0	587	89	2	2670	27	23	20	28	1.99
18501783--18501835	26	2.0	26	100	0	106	26	20	26	26	1.99
18503518--18503570	26	2.0	26	92	0	88	30	18	20	30	1.97
18504375--18504429	26	2.1	26	100	0	110	25	20	27	27	1.99
18506694--18506745	26	2.0	25	89	10	79	28	17	23	30	1.97
18507596--18507648	26	2.0	26	96	0	97	26	15	26	32	1.95
18509362--18509414	26	2.0	26	88	0	79	26	20	22	30	1.98
18510241--18510293	26	2.0	26	96	0	97	28	20	24	26	1.99
18505198--18512928	892	8.7	882	83	6	9060	25	24	24	25	2.00
18511127--18511178	26	2.0	26	92	0	86	26	17	25	30	1.97
18511893--18511931	17	2.3	18	82	13	55	23	41	20	15	1.90
18513588--18513640	26	2.0	26	96	0	97	26	18	28	26	1.98
18514496--18514548	26	2.0	26	92	0	88	30	20	24	24	1.99
18512890--18515362	896	2.8	895	87	4	3474	25	23	25	25	2.00
18514726--18516047	669	2.0	669	90	1	2116	25	22	24	26	2.00
18516064--18516116	26	2.0	26	88	0	79	26	18	26	28	1.98
18516964--18517014	26	2.0	26	96	0	93	33	19	19	27	1.96
18515400--18518784	902	3.8	895	88	2	4861	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18517862--18517914	26	2.0	26	92	0	88	28	18	24	28	1.98
18519668--18519697	4	7.5	4	92	0	51	0	30	70	0	0.88
18519616--18522334	719	3.8	714	85	4	3505	26	22	24	27	2.00
18524126--18524166	16	2.6	16	78	17	50	24	0	7	68	1.15
18524197--18524240	19	2.3	18	82	17	54	36	0	2	61	1.09
18524182--18524232	15	3.4	16	79	10	56	35	0	5	58	1.22
18524669--18524736	31	2.2	31	83	0	82	25	16	22	36	1.94
18525205--18525229	13	1.9	13	100	0	50	16	0	4	80	0.87
18525263--18525342	22	3.6	21	77	15	81	15	7	1	76	1.07
18525248--18525320	17	4.6	16	72	17	53	17	5	1	75	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195