genome.fa.s112.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  117  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20314818--20314870	26	2.0	26	92	0	88	28	24	18	28	1.98
20315710--20315762	26	2.0	26	92	0	88	30	26	16	26	1.97
20312334--20316171	906	4.3	901	86	4	5158	25	25	23	25	2.00
20315516--20316817	668	2.0	662	86	3	1816	21	26	25	25	2.00
20317270--20317322	26	2.0	26	96	0	97	26	28	18	26	1.98
20316181--20323603	892	8.2	889	86	4	9372	25	25	24	24	2.00
20318180--20318232	26	2.0	26	92	0	88	26	24	18	30	1.98
20319066--20319118	26	2.0	26	96	0	97	28	26	20	24	1.99
20319948--20320026	26	3.0	26	100	0	158	26	26	20	26	1.99
20320878--20320931	26	2.0	27	92	3	92	27	25	18	27	1.98
20322681--20322732	25	2.0	26	96	3	97	26	26	21	25	1.99
20325594--20325658	25	2.5	26	97	2	123	26	24	20	29	1.99
20326089--20326146	27	2.2	26	81	3	62	56	12	5	25	1.56
20326508--20326560	26	2.0	26	96	0	97	26	20	20	32	1.98
20329217--20329269	26	2.0	26	85	7	72	30	24	15	30	1.95
20325613--20333578	903	8.9	899	86	2	10561	25	24	24	25	2.00
20330120--20330172	26	2.0	26	85	7	72	28	24	18	28	1.98
20331015--20331070	26	2.2	26	93	0	94	28	21	19	30	1.98
20331906--20331958	26	2.0	26	96	0	97	26	26	18	28	1.98
20332808--20332860	26	2.0	26	92	0	88	32	24	15	28	1.95
20333552--20333604	26	2.0	26	92	0	88	30	26	18	24	1.98
20332777--20334304	730	2.1	730	86	4	2146	26	23	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20334437--20334487	26	2.0	26	96	0	93	27	27	17	27	1.98
20335340--20335392	26	2.0	26	96	0	97	24	26	20	28	1.99
20338424--20338476	26	2.0	26	88	0	79	30	20	22	26	1.98
20339323--20339687	186	2.0	185	86	4	513	22	27	28	21	1.99
20340370--20340422	26	2.0	26	92	0	88	32	15	22	30	1.94
20341275--20341327	26	2.0	26	96	0	97	28	20	26	24	1.99
20339480--20343951	901	5.0	902	87	2	5921	25	24	24	25	2.00
20342176--20342228	26	2.0	26	92	0	88	30	16	24	28	1.97
20343882--20344016	67	2.0	67	95	0	243	26	28	28	16	1.97
20344416--20344468	26	2.0	26	96	0	97	28	20	24	26	1.99
20345302--20345354	26	2.0	26	85	7	72	28	20	22	28	1.99
20345290--20345697	185	2.2	184	84	3	518	21	27	27	23	1.99
20345460--20349101	903	4.1	898	86	4	4741	25	24	24	25	2.00
20347292--20347344	26	2.0	26	92	0	88	26	20	26	26	1.99
20349291--20349343	26	2.0	26	96	0	97	28	20	24	26	1.99
20351423--20351475	26	2.0	26	88	0	79	24	22	22	30	1.99
20352104--20352156	26	2.0	26	92	0	88	28	28	18	24	1.98
20351109--20352489	697	2.0	677	85	6	1837	22	26	26	24	2.00
20354553--20354605	26	2.0	26	100	0	106	26	26	20	26	1.99
20355569--20355621	26	2.0	26	96	0	97	26	24	22	26	2.00
20357645--20357697	26	2.0	26	100	0	106	26	26	20	26	1.99
20355886--20360843	885	5.5	900	86	4	6469	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20359422--20359474	26	2.0	26	96	0	97	26	24	20	28	1.99
20360813--20360879	17	3.9	17	76	7	73	47	20	10	20	1.79
20362042--20362120	26	3.0	26	98	0	149	26	24	20	29	1.99
20363678--20364026	159	2.2	158	85	1	466	18	29	29	21	1.97
20364879--20364957	26	3.0	26	94	0	140	26	22	20	30	1.98
20366665--20366743	26	3.0	26	84	0	113	26	21	18	32	1.97
20366828--20366853	11	2.4	11	100	0	52	15	38	38	7	1.76
20367403--20367432	4	7.5	4	100	0	60	0	73	26	0	0.84
20368334--20368386	26	2.0	26	92	7	90	30	26	16	26	1.97
20368360--20369835	727	2.0	720	88	2	2188	26	24	23	25	2.00
20373163--20373214	26	2.0	26	96	3	97	26	25	21	26	1.99
20372430--20378276	902	6.5	905	87	3	8049	25	24	24	25	2.00
20379523--20381493	897	2.2	898	86	3	2714	25	23	24	25	2.00
20380738--20382243	768	2.0	772	87	2	2170	26	22	24	26	2.00
20382379--20382430	25	2.0	26	96	3	97	25	21	26	26	1.99
20384161--20384213	26	2.0	26	96	0	97	28	20	24	26	1.99
20381511--20387597	901	6.8	892	86	3	8027	25	24	24	25	2.00
20385943--20385995	26	2.0	26	96	0	97	28	20	24	26	1.99
20386844--20386896	26	2.0	26	88	0	79	26	22	22	28	1.99
20387192--20388001	404	2.0	404	89	0	1246	29	19	19	32	1.96
20389913--20389960	25	1.9	25	91	0	78	29	20	25	25	1.99
20390094--20390146	26	2.0	26	88	0	79	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20389903--20390299	186	2.1	184	86	4	532	23	27	26	22	1.99
20390986--20391038	26	2.0	26	92	0	88	28	20	22	28	1.99
20391877--20391929	26	2.0	26	88	0	79	26	20	24	28	1.99
20391865--20392272	185	2.2	183	83	5	484	21	28	27	23	1.99
20392951--20393003	26	2.0	26	88	0	79	26	20	24	28	1.99
20392939--20393346	185	2.2	183	83	4	500	21	28	27	22	1.99
20394940--20394992	26	2.0	26	92	0	88	26	20	26	26	1.99
20393116--20396743	902	4.1	898	86	3	4951	25	24	24	25	2.00
20396929--20397007	26	3.0	26	98	0	149	29	20	24	26	1.99
20399094--20399146	26	2.0	26	88	0	79	24	22	22	30	1.99
20399774--20399826	26	2.0	26	92	0	88	28	28	18	24	1.98
20398773--20400159	697	2.0	685	85	5	1869	22	26	26	24	2.00
20399800--20401280	712	2.1	712	89	1	2304	26	24	23	25	2.00
20401351--20401403	26	2.0	26	96	0	97	28	26	18	26	1.98
20402368--20402420	26	2.0	26	92	0	88	26	26	22	24	2.00
20405035--20405087	26	2.0	26	100	0	106	26	26	20	26	1.99
20402341--20408224	907	6.6	900	83	5	6990	25	24	23	25	2.00
20406810--20406862	26	2.0	26	96	0	97	26	24	20	28	1.99
20402341--20408224	884	6.6	878	83	6	6620	25	24	23	25	2.00
20407676--20407728	26	2.0	26	88	0	79	26	24	18	30	1.98
20408197--20408263	17	3.9	17	78	7	82	49	19	10	20	1.77
20408197--20408263	34	2.0	34	88	5	100	49	19	10	20	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20407773--20409843	810	2.6	810	96	0	3772	25	25	23	25	2.00
20409007--20409073	17	3.9	17	78	7	82	49	19	10	20	1.77
20409007--20409073	34	2.0	34	88	5	100	49	19	10	20	1.77
20411192--20411396	112	1.8	112	86	2	295	17	25	31	25	1.97
20411971--20412319	159	2.2	158	88	2	504	20	30	28	20	1.98
20413176--20413254	26	3.0	26	90	0	122	27	21	18	31	1.97
20414980--20415058	26	3.0	26	92	0	131	27	22	18	30	1.98
20415150--20416527	717	1.9	718	89	0	2141	26	24	23	25	2.00
20416674--20418129	719	2.0	720	89	0	2200	26	24	23	25	2.00
20418262--20418312	26	2.0	26	96	0	93	29	25	17	27	1.98
20421476--20421527	26	2.0	25	92	3	86	26	25	19	28	1.98
20424155--20424206	26	2.0	25	85	3	68	28	25	19	26	1.98
20426797--20426849	26	2.0	26	92	0	88	28	24	20	26	1.99
20425928--20444722	901	20.9	898	77	9	15598	25	25	24	25	2.00
20430434--20430486	26	2.0	26	92	0	88	24	20	20	33	1.97
20431339--20431405	26	2.6	26	90	0	107	25	23	22	28	1.99
20433141--20433192	26	2.0	26	96	0	95	28	26	17	26	1.97
20438614--20438666	26	2.0	26	88	0	79	28	22	18	30	1.98
20443946--20445429	711	2.1	713	89	2	2244	26	24	24	25	2.00
20448134--20448186	26	2.0	26	92	0	88	28	22	20	28	1.99
20447397--20452557	878	5.9	878	85	5	6446	25	24	24	25	2.00
20449690--20449715	4	6.5	4	100	0	52	0	73	26	0	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20449899--20449948	26	1.9	26	92	8	84	26	28	22	24	1.99
20452375--20452798	184	2.3	185	82	1	519	22	26	27	23	2.00
20452717--20452769	26	2.0	26	89	7	81	32	26	15	26	1.95
20454469--20454521	26	2.0	26	96	0	97	26	24	20	28	1.99
20452564--20455627	869	3.5	864	81	8	3130	25	24	24	25	2.00
20455311--20455361	26	2.0	26	92	0	84	27	23	15	33	1.95
20456052--20457537	718	2.1	718	87	1	2098	27	23	22	26	2.00
20457647--20457699	26	2.0	26	92	0	88	26	22	20	30	1.98
20458539--20458590	26	2.0	26	88	0	77	28	23	17	30	1.97
20459442--20459492	26	2.0	26	88	0	75	27	21	17	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195