genome.fa.s112.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  82  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15580053--15580113	10	6.2	10	78	16	65	13	1	1	83	0.79
15580043--15580116	27	2.8	26	84	11	96	13	2	1	82	0.84
15580043--15580131	26	3.3	27	80	11	69	13	4	2	79	0.97
15580136--15580310	59	3.0	58	86	6	262	48	6	10	33	1.65
15581189--15581241	26	2.0	26	96	0	97	28	26	18	26	1.98
15582088--15582138	26	2.0	26	92	0	84	25	23	19	31	1.98
15580783--15585492	899	5.3	875	85	4	5688	25	25	23	25	2.00
15583827--15583879	26	2.0	26	88	0	79	30	24	18	26	1.98
15584724--15584776	26	2.0	26	96	0	97	28	26	18	26	1.98
15585466--15585517	26	2.0	25	92	3	86	26	25	23	25	2.00
15586349--15586401	26	2.0	26	85	0	70	30	26	18	24	1.98
15587240--15587292	26	2.0	26	96	0	97	28	26	18	26	1.98
15585463--15588936	891	3.9	889	83	6	4066	26	24	23	25	2.00
15587373--15587405	11	3.0	11	100	0	66	18	27	36	18	1.94
15588171--15588222	26	2.0	27	88	3	79	26	19	19	34	1.95
15588910--15588962	26	2.0	26	100	0	106	26	26	20	26	1.99
15588168--15590367	731	3.0	726	88	4	3103	26	24	23	26	2.00
15590506--15590558	26	2.0	26	96	0	97	26	24	20	28	1.99
15591936--15591988	26	2.0	26	96	0	97	28	26	18	26	1.98
15592821--15592873	26	2.0	26	92	0	88	28	24	18	28	1.98
15591064--15600905	893	11.0	889	87	4	12248	25	25	23	25	2.00
15594607--15594658	26	2.0	26	96	0	95	26	25	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15597262--15597314	26	2.0	26	100	0	106	26	26	20	26	1.99
15598157--15598209	26	2.0	26	92	0	88	28	28	18	24	1.98
15600845--15600898	26	2.1	26	100	0	108	25	27	20	25	1.99
15601577--15601629	26	2.0	26	92	0	88	28	24	20	26	1.99
15601332--15601819	245	2.0	243	86	2	674	19	23	32	23	1.97
15602479--15602531	26	2.0	26	88	0	79	26	20	22	30	1.98
15604100--15604153	26	2.1	26	100	0	108	24	25	22	27	2.00
15605683--15607188	711	2.1	711	87	3	2127	26	23	23	26	2.00
15607298--15607350	26	2.0	26	92	0	88	28	24	18	28	1.98
15608201--15608253	26	2.0	26	96	0	97	28	26	18	26	1.98
15606428--15608978	903	2.8	895	86	3	3523	25	24	23	25	2.00
15610279--15610328	26	1.9	26	95	0	91	24	20	22	34	1.97
15611173--15611225	26	2.0	26	92	0	88	28	24	18	28	1.98
15609431--15615452	915	6.7	901	84	4	7405	25	24	24	25	2.00
15612977--15613029	26	2.0	26	92	0	88	28	24	18	28	1.98
15613453--15613479	11	2.5	11	100	0	54	77	0	0	22	0.76
15614756--15614807	26	2.0	26	96	0	95	26	25	19	28	1.98
15615489--15615567	26	3.0	26	94	0	140	26	25	20	27	1.99
15614756--15616193	756	1.9	759	88	1	2202	27	23	23	26	2.00
15616416--15616468	26	2.0	26	92	0	88	28	24	20	26	1.99
15617319--15617371	26	2.0	26	88	0	79	32	22	18	26	1.97
15615515--15620858	901	5.9	901	85	4	6899	25	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15619124--15619205	26	3.2	26	94	0	137	29	23	18	29	1.97
15620054--15620106	26	2.0	26	96	0	97	26	22	22	28	1.99
15620080--15622241	704	3.0	704	85	5	2864	26	24	22	25	2.00
15622404--15623871	714	2.1	712	90	1	2321	26	24	23	25	2.00
15625754--15625806	26	2.0	26	96	0	97	26	24	20	28	1.99
15626889--15626941	26	2.0	26	85	0	70	28	24	20	26	1.99
15627069--15627126	26	2.2	26	93	3	98	27	24	20	27	1.99
15626500--15627313	429	1.9	429	84	2	1105	19	25	32	22	1.98
15627945--15627997	26	2.0	26	96	0	97	24	26	22	26	2.00
15627052--15629525	870	2.8	869	93	0	4110	26	23	24	25	2.00
15628815--15628867	26	2.0	26	96	0	97	24	26	22	26	2.00
15629200--15629851	326	2.0	328	88	1	959	34	23	17	24	1.95
15630047--15630099	26	2.0	26	96	0	97	26	24	20	28	1.99
15630774--15630806	17	1.9	17	93	0	57	15	24	39	21	1.91
15630784--15633212	886	2.7	887	87	3	3426	26	24	23	26	2.00
15632446--15634647	717	3.1	716	87	2	3121	26	23	23	26	2.00
15633874--15637236	896	3.8	882	85	4	4173	26	24	23	25	2.00
15635626--15635677	26	2.0	26	96	0	95	28	25	19	26	1.98
15636521--15636573	26	2.0	26	96	0	97	26	24	20	28	1.99
15636563--15637875	663	2.0	668	88	4	1950	28	23	22	25	1.99
15638080--15638132	26	2.0	26	92	0	88	28	24	18	28	1.98
15638459--15638493	12	2.9	12	100	0	70	22	8	17	51	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15638836--15638886	26	2.0	26	100	0	102	27	27	15	29	1.96
15639733--15639785	26	2.0	26	92	0	88	26	24	18	30	1.98
15638567--15651522	903	14.3	901	83	5	14976	25	25	24	25	2.00
15642440--15642492	26	2.0	26	96	0	97	28	26	20	24	1.99
15643444--15643496	26	2.0	26	88	0	79	24	22	22	30	1.99
15644349--15644400	26	2.0	26	100	0	104	30	23	19	26	1.98
15642986--15651522	891	9.5	901	86	3	10986	25	25	24	25	2.00
15647015--15647067	26	2.0	26	96	0	97	26	24	20	28	1.99
15648812--15648861	26	1.9	26	91	0	82	28	24	20	28	1.99
15649707--15649757	26	2.0	26	96	0	93	29	23	19	27	1.98
15654862--15654913	26	2.0	26	92	0	86	25	26	19	28	1.98
15654941--15654973	15	2.3	15	94	5	59	9	27	36	27	1.87
15655765--15655817	26	2.0	26	96	0	97	26	28	18	26	1.98
15658397--15658449	26	2.0	26	85	0	70	30	24	16	28	1.97
15653989--15661676	880	8.7	881	85	5	9399	26	24	23	25	2.00
15659282--15659334	26	2.0	26	88	0	79	30	26	16	26	1.97
15662295--15662353	21	2.9	21	80	12	77	61	11	3	23	1.46
15662584--15662636	26	2.0	26	85	0	70	26	22	22	28	1.99
15661000--15663286	769	3.0	749	83	7	2569	27	24	22	25	2.00
15663473--15663525	26	2.0	26	96	0	97	26	24	20	28	1.99
15664376--15664428	26	2.0	26	92	0	88	26	22	22	28	1.99
15662554--15670640	904	8.9	903	77	8	7481	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15665280--15665332	26	2.0	26	88	0	79	28	24	20	26	1.99
15666182--15666234	26	2.0	26	89	7	81	32	26	16	24	1.97
15667076--15667128	26	2.0	26	100	0	106	26	26	20	26	1.99
15668985--15669037	26	2.0	26	96	0	97	26	24	20	28	1.99
15670560--15685002	868	16.3	867	84	6	16117	25	24	24	25	2.00
15674071--15674123	26	2.0	26	85	0	70	28	24	20	26	1.99
15675424--15675477	26	2.1	26	86	3	74	55	18	5	20	1.62
15677611--15677663	26	2.0	26	92	0	88	26	26	22	24	2.00
15679413--15679465	26	2.0	26	96	0	97	28	26	18	26	1.98
15683813--15683864	26	2.0	26	96	0	95	26	25	21	26	1.99
15686406--15686476	26	2.7	26	91	0	115	28	25	15	30	1.96
15688232--15688284	26	2.0	26	92	0	88	26	22	20	30	1.98
15689117--15689174	26	2.2	26	90	3	89	31	25	17	25	1.97
15686451--15691800	874	6.0	873	88	3	6846	25	24	23	25	2.00
15691774--15691825	26	2.0	26	88	0	77	28	25	17	28	1.97
15692203--15692255	26	2.0	26	92	0	88	32	24	15	28	1.95
15692666--15692722	26	2.2	26	84	6	71	61	10	5	22	1.48
15693093--15693145	26	2.0	26	96	0	97	26	24	20	28	1.99
15695552--15697044	719	2.1	714	89	1	2319	27	24	22	25	2.00
15697148--15697200	26	2.0	26	92	0	88	30	26	16	26	1.97
15697587--15697628	17	2.6	16	80	3	57	4	9	4	80	0.99
15697623--15697775	3	47.3	3	70	24	50	28	1	3	66	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15697649--15697768	28	4.5	26	68	21	70	28	1	4	65	1.20
15697669--15697763	4	22.5	4	69	18	50	27	1	4	67	1.16
15698795--15698934	22	6.2	21	68	18	77	18	4	3	73	1.14
15698849--15698906	17	3.4	17	72	13	57	13	5	1	79	0.98
15698861--15698929	26	2.6	25	70	20	52	14	4	1	79	0.95
15698861--15698915	17	3.2	17	84	5	76	12	3	1	81	0.89
15698946--15699512	55	9.9	57	85	9	707	45	8	12	33	1.72
15703405--15703446	19	2.3	19	84	8	61	76	0	16	7	1.00
15703405--15703471	17	3.9	18	74	12	61	77	0	16	5	0.95
15703414--15703462	22	2.3	21	82	10	55	79	0	16	4	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195