genome.fa.s112.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  161  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26831737--26831777	20	2.1	20	90	4	66	26	7	9	56	1.58
26831823--26831927	20	5.3	20	75	13	103	35	3	10	50	1.55
26831823--26831946	19	6.4	18	76	12	86	34	4	9	51	1.54
26831823--26831946	39	3.2	38	81	13	146	34	4	9	51	1.54
26833011--26833064	15	3.5	15	80	9	63	68	0	16	14	1.21
26837187--26837217	2	15.0	2	93	6	53	48	0	3	48	1.17
26839427--26839480	16	3.5	16	66	19	51	51	11	0	37	1.37
26839433--26839492	30	2.0	30	100	0	120	50	10	0	40	1.36
26839888--26839967	32	2.5	32	81	2	88	66	8	1	23	1.27
26839977--26840027	21	2.4	21	93	0	84	56	9	3	29	1.49
26847373--26847413	13	3.2	13	80	13	57	39	2	7	51	1.43
26849064--26849112	21	2.3	21	78	0	53	14	30	14	40	1.85
26853586--26853630	21	2.1	21	83	0	54	37	22	11	28	1.88
26856164--26857199	239	4.3	237	80	4	1023	34	12	12	40	1.81
26856164--26857197	477	2.2	475	80	4	1159	35	12	12	40	1.81
26858042--26858101	25	2.5	24	80	2	66	26	10	23	40	1.86
26861356--26861623	125	2.1	125	83	8	323	32	14	16	36	1.88
26863936--26864016	20	4.2	20	81	9	105	51	9	3	34	1.53
26863942--26864037	37	2.5	39	88	8	142	53	10	5	31	1.57
26863937--26864099	61	2.7	60	84	7	183	54	9	7	28	1.59
26863943--26864138	20	9.9	19	71	13	101	53	10	7	29	1.61
26864276--26864304	4	7.2	4	100	0	58	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26877513--26877561	24	2.0	24	88	0	71	44	16	18	20	1.86
26877403--26877681	151	1.8	155	82	7	356	49	10	19	20	1.77
26878754--26878951	36	5.5	36	69	5	105	12	13	15	58	1.63
26878693--26878916	106	2.1	108	81	5	276	12	14	16	56	1.68
26878793--26878990	73	2.8	72	79	8	215	12	14	16	57	1.65
26878933--26879017	37	2.3	37	79	2	100	12	14	12	60	1.60
26878997--26879066	36	1.9	36	88	5	106	14	8	15	61	1.56
26879041--26879320	110	2.5	109	79	4	251	17	14	13	55	1.70
26879192--26879387	75	2.7	73	78	7	168	14	13	14	57	1.65
26879267--26879603	109	3.1	106	80	4	347	14	13	15	55	1.70
26879114--26879603	36	13.5	36	70	9	183	15	14	15	54	1.71
26880850--26880923	30	2.5	29	83	14	98	77	6	12	4	1.11
26880851--26880923	29	2.5	31	89	8	109	76	6	12	4	1.12
26880849--26880924	31	2.5	31	85	10	104	76	6	13	3	1.12
26881979--26882037	3	19.7	3	100	0	118	66	0	0	33	0.92
26882953--26883002	24	2.0	26	84	7	68	44	2	4	50	1.32
26883463--26883495	16	2.0	17	88	5	50	78	3	18	0	0.87
26884575--26884616	15	2.7	16	81	3	50	21	2	11	64	1.38
26884684--26884722	3	13.0	3	94	0	69	66	2	0	30	1.05
26886114--26886170	3	19.0	3	100	0	114	66	0	0	33	0.92
26887072--26887127	13	4.4	13	77	4	60	53	17	7	21	1.67
26887106--26887159	19	2.8	19	78	10	65	44	22	11	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26887144--26887189	19	2.4	19	81	0	56	50	26	8	15	1.73
26888549--26888594	20	2.2	21	81	14	51	63	6	0	30	1.20
26888628--26888660	14	2.3	15	90	10	52	57	6	6	30	1.47
26896238--26896366	42	3.1	42	83	0	177	35	7	34	22	1.83
26896669--26896752	31	2.7	31	80	7	98	35	15	21	27	1.94
26898618--26898725	52	2.1	51	84	3	137	28	14	19	37	1.92
26898971--26899029	13	4.6	13	89	2	75	13	1	5	79	0.97
26899080--26899130	24	2.1	24	85	7	68	76	1	3	17	1.03
26899263--26899303	19	2.1	19	90	4	64	78	0	0	21	0.76
26911244--26911276	17	1.9	17	93	0	57	27	15	15	42	1.86
26911450--26912319	39	22.5	40	73	9	287	24	11	21	42	1.86
26911688--26911748	32	1.9	32	96	0	113	21	14	16	47	1.82
26911606--26911827	111	2.0	111	86	1	311	24	12	19	43	1.85
26911450--26912286	190	4.3	187	80	7	813	24	11	21	42	1.86
26911845--26911955	33	3.2	33	75	7	96	24	17	22	36	1.95
26911727--26912319	78	7.6	77	79	9	367	24	11	22	41	1.86
26911458--26912319	117	7.4	116	77	8	663	25	11	21	41	1.86
26913351--26913393	21	2.0	22	82	13	54	16	0	11	72	1.13
26913387--26913423	3	13.0	3	83	11	51	29	0	2	67	1.04
26913444--26913488	4	10.8	4	84	13	56	75	0	4	20	0.97
26913444--26913488	17	2.7	16	83	16	56	75	0	4	20	0.97
26913620--26913661	21	2.1	19	86	8	57	78	0	0	21	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26916686--26916734	21	2.3	21	85	3	62	44	4	0	51	1.20
26919461--26919485	13	1.9	13	100	0	50	88	0	8	4	0.64
26920185--26920228	18	2.4	19	81	11	56	22	2	0	75	0.92
26920310--26920369	26	2.3	27	80	8	70	61	3	1	33	1.22
26920846--26921229	193	2.0	193	92	1	644	38	11	12	38	1.79
26922634--26923021	194	2.0	195	88	4	577	38	10	13	38	1.79
26923865--26923942	38	2.1	36	86	9	104	62	3	1	32	1.21
26923905--26923957	23	2.3	22	87	9	79	67	1	0	30	1.01
26926001--26926033	12	2.6	13	85	9	50	63	3	0	33	1.10
26926167--26926196	2	15.0	2	92	0	51	53	0	0	46	1.00
26927526--26927552	2	13.5	2	100	0	54	51	0	0	48	1.00
26929140--26929203	28	2.3	27	80	17	69	60	1	6	31	1.30
26933896--26933921	11	2.4	11	100	0	52	26	0	7	65	1.20
26934096--26934167	35	2.1	35	84	10	94	75	6	8	9	1.20
26935440--26935647	43	4.8	43	69	15	124	52	11	6	29	1.63
26938096--26938256	87	1.9	83	82	7	198	55	11	6	26	1.59
26938233--26938333	43	2.3	43	81	6	107	52	8	3	34	1.51
26941356--26941381	3	8.7	3	100	0	52	30	0	0	69	0.89
26942412--26942446	17	2.0	17	94	5	61	57	0	5	37	1.23
26958796--26958853	3	19.0	3	92	3	98	31	0	3	65	1.09
26963617--26963682	34	1.9	34	96	0	123	28	15	22	33	1.94
26963725--26963861	43	3.2	43	82	5	168	29	11	16	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26963858--26963952	43	2.2	43	87	7	140	31	21	13	33	1.92
26967935--26967975	3	13.7	3	100	0	82	31	0	0	68	0.90
26974790--26974923	40	3.2	40	65	19	112	33	11	16	38	1.85
26974746--26974930	84	2.2	84	97	0	345	32	15	15	36	1.89
26981733--26981832	37	2.5	38	85	9	121	21	12	21	46	1.83
26985317--26985366	20	2.5	20	78	12	57	26	4	12	58	1.51
26986781--26986848	6	11.8	6	86	9	52	20	0	13	66	1.25
26986810--26986844	3	11.7	3	100	0	70	31	0	0	68	0.90
26988391--26988495	36	2.9	36	85	2	149	42	7	18	31	1.78
27006614--27007180	58	9.8	59	86	6	714	38	11	5	43	1.65
27006614--27007180	172	3.2	171	83	7	714	38	11	5	43	1.65
27006614--27007180	290	2.0	291	87	5	826	38	11	5	43	1.65
27006614--27007179	114	4.9	115	85	6	718	38	11	5	43	1.66
27007248--27007328	11	7.6	10	72	16	65	79	7	1	12	1.00
27007249--27007328	20	3.8	21	75	12	83	78	7	1	12	1.01
27007248--27007327	41	1.9	44	85	10	114	78	7	1	12	1.01
27008577--27008631	23	2.4	22	79	11	58	69	7	5	18	1.32
27008845--27009006	44	3.6	45	82	2	202	45	19	15	19	1.86
27008858--27009081	44	5.2	44	76	8	176	44	20	13	21	1.86
27008844--27009010	89	1.9	88	88	1	253	46	19	14	19	1.84
27009038--27009206	41	4.1	41	82	3	205	41	19	16	22	1.90
27011005--27011067	8	7.9	8	76	16	60	7	14	0	77	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27015044--27015444	58	6.9	58	87	8	541	38	12	6	42	1.68
27016834--27016896	23	2.7	24	76	14	69	69	6	7	15	1.33
27017745--27017772	2	14.0	2	100	0	56	50	0	0	50	1.00
27021935--27021977	20	2.2	20	86	0	59	30	6	11	51	1.65
27022636--27022702	25	2.7	23	80	11	71	11	2	5	79	1.03
27022854--27022956	20	5.3	20	76	5	104	36	8	8	45	1.66
27022863--27022956	39	2.4	38	87	1	134	35	8	9	46	1.67
27024116--27024160	10	4.3	10	78	10	54	82	0	15	2	0.77
27024115--27024160	23	2.1	22	84	11	60	82	0	15	2	0.76
27024115--27024162	24	2.0	23	84	4	60	81	0	16	2	0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195