genome.fa.s112.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  179  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30310643--30311019	199	1.9	200	95	1	686	52	11	5	29	1.60
30310752--30311038	158	1.8	159	89	3	454	51	11	6	30	1.63
30310907--30311073	21	7.8	21	77	12	121	50	11	7	30	1.65
30310894--30311149	24	11.5	24	70	20	116	52	9	5	32	1.56
30310757--30311081	158	2.1	155	84	8	354	52	11	5	30	1.60
30311096--30311138	21	2.1	20	86	4	59	53	11	2	32	1.50
30311170--30311212	20	2.4	19	82	17	56	41	11	11	34	1.78
30312144--30312307	43	3.9	43	79	9	176	38	18	13	29	1.89
30312132--30312308	85	2.1	85	83	8	218	37	18	13	31	1.89
30313666--30313713	20	2.4	18	78	18	51	12	4	2	81	0.93
30318969--30319002	18	1.9	17	88	5	50	50	8	5	35	1.58
30319039--30319077	20	2.0	20	85	10	53	56	12	7	23	1.62
30319333--30319547	21	10.1	20	70	18	114	51	11	4	33	1.57
30319338--30319436	41	2.4	41	93	0	171	50	11	6	32	1.62
30319414--30319530	47	2.6	45	84	9	150	52	10	2	34	1.49
30320138--30320172	13	2.6	13	86	4	52	48	8	0	42	1.33
30321617--30321690	30	2.5	30	75	4	78	40	0	1	58	1.07
30321657--30321708	22	2.5	22	93	6	90	50	0	0	50	1.00
30323598--30323643	23	2.0	24	82	4	58	50	2	6	41	1.40
30328772--30328799	2	14.0	2	100	0	56	50	0	0	50	1.00
30332266--30332308	13	3.2	13	83	9	52	67	2	2	27	1.15
30333962--30334018	27	2.2	26	81	15	64	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30334050--30334108	27	2.2	27	82	11	68	50	0	0	49	1.00
30334146--30334215	31	2.3	31	82	9	81	32	4	0	62	1.14
30338966--30338994	3	9.7	3	100	0	58	34	0	0	65	0.93
30340078--30340157	41	2.0	41	89	0	124	47	20	13	18	1.82
30342279--30342315	15	2.4	17	82	17	53	62	0	21	16	1.33
30344693--30344722	4	7.2	4	92	7	51	76	0	0	23	0.78
30344692--30344725	13	2.5	13	95	4	59	76	0	0	23	0.79
30351377--30351406	15	2.0	15	93	0	51	33	6	10	50	1.62
30354372--30354427	15	3.5	16	78	7	69	16	1	35	46	1.57
30354376--30354444	33	2.2	30	82	15	77	23	2	27	46	1.66
30354701--30354730	3	10.0	3	100	0	60	33	0	0	66	0.92
30354807--30354857	22	2.3	22	100	0	102	47	13	0	39	1.43
30354861--30354913	17	2.9	18	73	15	56	67	5	0	26	1.12
30356007--30356045	20	2.0	20	89	0	60	51	2	2	43	1.29
30356381--30356662	87	3.3	86	81	4	318	38	18	21	21	1.93
30357241--30357679	33	13.5	32	85	2	414	34	15	20	29	1.93
30357241--30357679	65	6.7	64	80	7	422	34	15	20	29	1.93
30371740--30371794	27	2.1	26	82	3	65	45	7	1	45	1.41
30373255--30373299	18	2.5	18	85	0	54	37	4	11	46	1.60
30373347--30373436	31	2.9	31	83	6	94	33	10	8	47	1.68
30374865--30374943	7	10.6	7	80	10	68	15	12	0	72	1.13
30374894--30374937	9	5.3	9	81	15	51	13	6	0	79	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30374880--30374943	23	2.7	23	90	2	92	15	10	0	73	1.09
30374887--30374922	16	2.2	17	90	5	56	13	11	0	75	1.06
30374865--30374943	15	5.3	15	70	8	54	15	12	0	72	1.13
30375347--30375376	15	2.0	15	93	0	51	13	10	0	76	1.01
30380632--30380656	13	1.9	13	100	0	50	76	0	0	24	0.80
30381404--30381450	24	1.9	24	86	4	67	48	12	2	36	1.53
30381543--30381659	21	5.7	21	78	11	143	49	12	7	29	1.69
30381526--30381905	41	9.4	41	80	9	399	51	11	6	31	1.62
30381475--30381866	199	2.0	199	95	1	714	52	11	5	30	1.59
30381722--30381899	21	8.7	21	74	14	158	51	11	6	30	1.63
30381709--30382025	20	14.5	24	70	20	127	52	9	4	33	1.55
30381921--30382025	47	2.3	45	86	6	140	54	8	1	35	1.42
30381534--30382028	240	2.1	238	82	7	592	51	10	5	32	1.58
30382046--30382088	20	2.4	19	82	17	56	41	11	11	34	1.78
30382637--30382680	23	1.9	23	86	9	63	13	9	2	75	1.14
30383025--30383177	42	3.6	43	78	8	161	38	15	12	33	1.85
30389912--30389950	20	2.0	20	84	0	51	51	15	10	23	1.73
30390207--30390310	20	5.1	20	73	20	81	51	9	4	33	1.56
30390212--30390310	41	2.4	41	85	6	146	51	10	5	33	1.57
30390232--30390304	21	3.5	20	76	10	76	52	12	5	30	1.61
30392621--30392694	30	2.5	30	75	4	78	40	0	1	58	1.07
30392661--30392712	22	2.5	22	93	6	90	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30393250--30393293	23	1.9	23	81	9	54	54	13	0	31	1.39
30394498--30394543	23	2.0	24	82	4	58	50	2	6	41	1.40
30399486--30399518	16	2.1	16	94	0	57	36	0	18	45	1.49
30400686--30400735	13	3.6	13	78	10	55	68	2	0	30	1.01
30400686--30400764	24	3.0	26	72	16	74	64	2	0	32	1.07
30407980--30408061	42	2.0	42	90	0	128	48	19	13	18	1.80
30410192--30410229	15	2.4	16	83	16	53	60	0	21	18	1.36
30411830--30411863	17	1.9	18	88	5	52	32	29	0	38	1.58
30412595--30412624	4	7.2	4	92	7	51	76	0	0	23	0.78
30412594--30412627	9	3.8	9	88	11	52	76	0	0	23	0.79
30419950--30419979	15	2.0	15	93	0	51	33	6	10	50	1.62
30422948--30423003	15	3.5	15	78	7	58	16	3	33	46	1.64
30423269--30423320	3	17.7	3	92	4	88	32	1	0	65	1.04
30423433--30423482	18	2.8	19	75	22	54	70	4	0	26	1.05
30424593--30424628	18	2.0	18	88	0	54	52	2	2	41	1.30
30424829--30424922	37	2.5	37	77	0	107	43	19	22	14	1.87
30424972--30425230	85	3.0	85	84	5	333	38	18	21	22	1.94
30425812--30426185	33	11.5	33	83	7	426	34	15	20	29	1.93
30425877--30426185	163	1.9	163	90	1	494	33	14	21	30	1.93
30425812--30426185	130	2.9	131	85	4	474	34	15	20	29	1.93
30427178--30427207	4	7.5	4	100	0	60	23	0	0	76	0.78
30432494--30432531	18	2.1	19	85	5	51	31	2	7	57	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30434236--30434296	16	3.8	16	82	6	79	13	1	36	49	1.52
30434219--30434265	24	2.0	24	82	0	58	10	2	38	48	1.50
30434293--30434323	16	2.0	16	93	6	55	51	3	6	38	1.44
30434707--30434775	35	2.0	34	83	13	88	73	2	0	23	0.96
30435454--30435492	18	2.2	18	85	0	51	12	7	46	33	1.71
30438825--30438872	18	3.0	16	79	17	55	45	4	2	47	1.33
30439341--30439372	2	16.0	2	93	0	55	3	46	0	50	1.17
30444376--30444438	23	2.6	24	80	19	69	44	3	1	50	1.27
30445547--30445577	14	2.2	14	100	0	62	35	0	64	0	0.94
30446266--30446296	2	15.5	2	100	0	62	0	48	0	51	1.00
30454326--30454367	20	2.0	20	82	17	50	35	0	4	59	1.19
30454365--30454414	17	2.9	17	80	16	59	48	0	4	48	1.20
30454358--30454417	18	3.3	18	78	19	54	46	0	5	48	1.24
30457546--30457623	35	2.2	35	84	8	97	46	8	6	38	1.61
30460408--30460447	2	20.0	2	100	0	80	50	0	0	50	1.00
30465700--30465751	22	2.4	22	80	6	61	28	21	0	50	1.49
30466396--30466474	38	2.0	42	85	12	112	54	0	2	43	1.14
30471768--30471815	2	24.0	2	100	0	96	50	0	50	0	1.00
30481355--30481396	3	14.0	3	100	0	84	33	0	0	66	0.92
30483228--30483378	78	1.9	78	91	0	248	31	23	21	23	1.99
30489710--30489808	34	2.9	34	79	8	103	34	14	9	42	1.77
30495402--30495471	33	2.1	33	94	0	122	42	17	14	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30496733--30496805	37	2.0	37	84	12	98	43	4	0	52	1.20
30496781--30496825	23	1.9	24	81	4	56	55	0	0	44	0.99
30496805--30496855	21	2.3	22	80	10	59	64	0	0	35	0.94
30497826--30497872	24	2.0	24	83	8	60	40	4	0	55	1.19
30506760--30506867	55	2.0	55	94	0	189	34	13	16	35	1.89
30510680--30510730	21	2.3	21	83	12	59	25	27	3	43	1.72
30515529--30515704	89	2.0	88	96	1	325	39	5	9	45	1.60
30515867--30515903	17	2.2	17	90	9	58	70	2	0	27	1.01
30528605--30528629	7	3.6	7	100	0	50	16	16	0	68	1.22
30534316--30534340	7	3.6	7	100	0	50	40	28	16	16	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195