genome.fa.s112.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  25  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5767942--5767986	21	2.2	20	84	7	56	46	0	4	48	1.22
5767986--5768040	17	2.9	19	76	17	62	49	0	0	50	1.00
5770626--5770652	2	13.5	2	100	0	54	48	0	0	51	1.00
5771965--5772026	18	3.4	19	73	6	65	58	0	3	38	1.15
5773793--5773817	2	12.5	2	100	0	50	52	0	0	48	1.00
5774413--5774452	11	3.6	11	83	12	55	17	0	30	52	1.45
5774410--5774452	22	2.0	22	95	0	77	20	0	30	48	1.50
5774476--5774632	52	3.0	51	82	5	172	42	6	21	29	1.78
5774745--5774895	76	2.0	76	92	0	248	28	4	32	34	1.78
5776628--5776773	72	2.0	72	97	0	274	41	13	17	28	1.87
5777648--5777676	7	4.1	7	100	0	58	41	0	58	0	0.98
5778768--5778825	9	6.3	9	78	9	55	15	13	13	56	1.67
5778768--5778825	18	3.2	18	78	11	64	15	13	13	56	1.67
5783416--5783451	2	18.0	2	100	0	72	50	0	0	50	1.00
5784371--5784395	9	2.8	9	100	0	50	72	20	0	8	1.10
5789794--5789819	3	8.7	3	100	0	52	69	0	0	30	0.89
5790114--5790153	18	2.2	19	86	13	57	42	0	10	47	1.37
5792247--5792296	2	25.0	2	87	0	73	46	2	2	50	1.24
5793766--5793797	10	3.0	11	90	9	57	34	0	37	28	1.57
5798302--5798361	26	2.3	27	81	16	81	55	0	8	36	1.30
5799889--5800017	68	1.9	69	93	1	224	54	13	15	16	1.72
5804217--5804265	2	24.5	2	100	0	98	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5806244--5806300	19	3.1	18	77	7	60	29	0	0	70	0.88
5806239--5806296	17	3.3	17	80	7	71	29	0	0	70	0.87
5806235--5806298	25	2.5	26	78	19	80	29	0	0	70	0.88
5808421--5808460	6	6.7	6	97	0	71	55	27	17	0	1.43
5815631--5815674	19	2.4	19	84	3	54	25	15	2	56	1.51
5827919--5828289	187	2.0	188	96	0	690	36	13	9	40	1.78
5828343--5828382	20	2.0	20	95	4	73	70	0	0	30	0.88
5832242--5832316	19	3.8	19	73	13	62	54	1	1	42	1.17
5832400--5832489	41	2.1	43	82	10	114	47	4	0	47	1.22
5832413--5832607	15	11.5	17	68	26	89	53	2	1	43	1.19
5832481--5832532	16	3.1	17	81	10	63	50	3	0	46	1.20
5832546--5832607	19	3.2	20	84	8	67	59	0	1	38	1.07
5841990--5842066	38	2.0	39	89	2	120	48	0	0	51	1.00
5842019--5842088	27	2.6	26	86	6	86	45	0	0	54	0.99
5842920--5842952	2	17.0	2	93	6	59	48	0	0	51	1.00
5845769--5845830	27	2.3	27	84	10	83	46	0	0	53	1.00
5845780--5845832	28	1.9	27	92	3	88	47	0	0	52	1.00
5845769--5845832	14	4.8	14	73	7	53	46	0	0	53	1.00
5856285--5856334	12	4.2	12	77	15	50	66	2	0	32	1.03
5857474--5857529	27	2.1	27	100	0	112	25	17	12	44	1.84
5859442--5859918	254	1.8	261	84	7	664	44	3	7	44	1.49
5866958--5867003	3	15.3	3	100	0	92	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5867100--5867147	21	2.3	21	85	3	62	39	4	6	50	1.47
5867226--5867276	21	2.4	21	80	3	57	25	13	13	47	1.80
5867639--5867682	22	2.0	22	90	0	70	38	11	6	43	1.67
5868003--5868164	22	7.4	22	70	10	91	38	8	4	48	1.54
5867935--5868164	43	5.3	44	74	6	157	39	10	3	46	1.56
5867995--5868164	65	2.6	64	75	9	171	38	9	4	47	1.55
5868558--5868656	22	4.5	22	81	0	81	39	10	6	44	1.63
5868561--5868646	44	2.0	44	85	0	118	38	10	6	44	1.66
5868586--5868688	22	4.7	22	83	4	118	43	6	1	47	1.41
5868691--5868734	22	2.0	22	82	8	54	34	2	13	50	1.55
5868791--5868949	22	7.4	22	70	9	103	33	6	7	52	1.55
5868774--5868831	30	1.9	30	82	6	73	37	5	5	51	1.46
5868791--5868946	44	3.6	43	76	10	149	33	5	7	53	1.53
5868790--5868946	85	1.8	85	81	8	194	33	5	7	52	1.54
5869039--5869109	22	3.3	22	78	11	67	39	14	4	42	1.65
5869344--5869404	22	2.8	21	85	7	86	32	11	6	49	1.65
5869408--5869487	42	1.9	42	82	5	99	31	6	13	48	1.67
5869372--5869489	22	5.5	23	69	14	72	33	5	11	49	1.64
5872808--5872867	29	2.2	29	82	8	72	61	1	5	31	1.27
5872827--5872881	23	2.4	23	84	6	67	58	0	7	34	1.26
5872825--5872881	26	2.3	23	85	8	69	59	0	7	33	1.24
5872891--5872948	29	2.1	28	81	9	66	58	0	5	36	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5872928--5872954	14	1.9	14	100	0	54	66	0	3	29	1.09
5879052--5879085	17	1.9	18	88	5	52	55	0	0	44	0.99
5879050--5879115	22	3.0	23	78	14	68	51	0	0	48	1.00
5884453--5885852	322	4.3	319	78	7	1240	35	7	12	44	1.70
5884453--5885868	161	8.8	158	75	10	861	35	7	12	44	1.71
5886808--5886839	8	3.8	9	88	12	50	40	0	9	50	1.35
5892120--5892417	151	2.0	151	91	0	490	38	8	7	45	1.62
5893076--5893104	12	2.5	12	94	5	51	44	0	0	55	0.99
5893713--5893833	61	2.0	63	88	3	183	32	6	21	39	1.79
5894740--5894774	17	2.1	17	89	5	54	68	2	0	28	1.04
5901031--5901076	12	3.8	12	75	18	51	23	0	15	60	1.34
5908402--5908689	142	2.0	142	95	0	513	34	19	6	39	1.77
5911992--5912034	14	3.1	14	77	9	52	39	0	0	60	0.97
5920542--5920582	12	3.5	12	75	18	50	73	2	0	24	0.96
5920751--5920776	8	3.2	8	100	0	52	65	0	0	34	0.93
5926477--5926651	88	2.0	88	95	0	314	48	10	9	32	1.69
5931718--5931761	21	2.2	21	84	8	56	54	4	2	38	1.33
5931828--5931869	19	2.2	19	86	0	57	7	19	2	71	1.20
5932122--5932155	12	2.7	13	90	4	52	82	0	17	0	0.67
5932128--5932201	33	2.2	32	79	11	87	75	2	20	1	1.00
5932448--5932495	17	2.8	17	82	17	55	58	2	16	22	1.49
5935352--5935376	3	8.3	3	100	0	50	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5944051--5944081	15	2.0	16	93	6	55	16	0	0	83	0.64
5944897--5944957	19	3.2	19	80	15	63	14	4	1	78	0.99
5944910--5944957	5	9.8	5	82	13	64	16	2	2	79	0.93
5956098--5956544	118	3.8	117	78	6	411	17	21	16	44	1.87
5956088--5956544	237	1.9	236	81	2	540	17	21	16	44	1.87
5956695--5956748	25	2.1	26	89	3	83	24	25	18	31	1.97
5957619--5957668	11	4.4	11	90	7	64	14	2	0	84	0.72
5957618--5957663	13	3.8	13	78	21	55	13	2	0	84	0.71
5957618--5957668	18	2.9	17	86	11	68	13	1	0	84	0.71
5957618--5957668	6	8.7	6	78	20	54	13	1	0	84	0.71
5959177--5959201	7	3.6	7	100	0	50	24	16	0	60	1.36
5968446--5968516	35	2.0	35	100	0	142	42	21	16	19	1.89
5968493--5968768	138	2.0	138	97	0	516	34	31	13	20	1.91
5973827--5973884	29	2.0	30	83	6	75	36	8	3	51	1.49
5974523--5974551	15	2.0	15	93	6	51	48	0	0	51	1.00
5991857--5991897	20	2.0	20	85	4	55	31	0	0	68	0.90
5992132--5992176	21	2.1	22	91	4	74	51	2	6	40	1.41
5992029--5992277	126	2.0	125	94	0	435	42	7	8	40	1.63
5993636--5993677	17	2.5	17	76	3	50	35	0	0	64	0.94
5999453--5999519	23	2.9	22	86	10	89	64	1	0	34	1.03
6001984--6002095	58	1.9	58	88	0	170	30	11	19	38	1.87
6030811--6030884	4	17.2	4	75	10	58	50	0	4	45	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6030811--6030884	9	8.6	8	74	12	58	50	0	4	45	1.20
6030807--6030884	38	2.0	39	90	2	122	47	0	3	48	1.20
6030811--6030880	13	5.5	13	79	3	61	50	0	4	45	1.21
6032233--6032269	19	2.0	18	89	5	56	48	0	0	51	1.00
6032530--6032578	24	2.0	26	84	8	66	42	4	6	46	1.47
6033269--6033499	114	2.0	114	90	1	365	32	9	10	47	1.71
6034775--6034809	18	1.9	18	100	0	70	22	17	14	45	1.84
6043983--6044021	10	3.9	10	87	12	62	41	0	7	51	1.31
6043982--6044020	20	2.0	20	100	0	78	41	0	7	51	1.31
6044388--6044430	17	2.3	19	76	19	54	48	6	2	41	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195