genome.fa.s112.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  26  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6044908--6044969	20	2.9	22	78	11	65	54	0	0	45	0.99
6052668--6052707	3	13.7	3	89	5	64	65	2	32	0	1.06
6055768--6055834	16	4.4	16	67	17	52	31	1	13	53	1.49
6062538--6062562	3	8.3	3	100	0	50	32	36	0	32	1.58
6063125--6063207	40	2.1	40	100	0	166	37	9	9	43	1.70
6064494--6064522	13	2.1	14	93	6	51	20	0	6	72	1.07
6064535--6064567	2	16.5	2	100	0	66	0	48	0	51	1.00
6066917--6066955	21	2.0	20	85	14	55	46	10	23	20	1.81
6080055--6080133	29	2.6	29	86	8	86	62	6	1	30	1.28
6080070--6080148	30	2.7	29	88	4	104	65	3	1	29	1.17
6080868--6080973	53	2.0	53	85	1	142	34	16	20	28	1.94
6082285--6082319	17	2.1	17	88	0	52	57	2	0	40	1.14
6085431--6085522	44	2.1	44	83	0	112	52	5	6	35	1.51
6085462--6085522	22	2.8	22	79	0	68	52	4	8	34	1.53
6085759--6085860	22	4.7	21	78	7	87	53	2	8	34	1.47
6085757--6085889	44	3.1	44	76	11	123	52	5	8	33	1.54
6085828--6085926	22	4.6	22	76	9	80	49	9	6	35	1.59
6085757--6085937	85	2.1	88	79	7	192	50	6	8	34	1.59
6086295--6086336	13	3.7	11	82	14	50	23	7	0	69	1.13
6086305--6086334	13	2.3	13	100	0	60	23	6	0	70	1.11
6086961--6087134	80	2.2	80	93	0	294	23	27	20	29	1.99
6088897--6089093	56	3.4	56	84	6	234	47	4	11	36	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6089004--6089093	29	3.1	29	68	17	87	42	4	14	38	1.66
6090257--6090291	15	2.3	15	90	9	54	48	8	5	37	1.58
6090224--6090343	22	5.5	22	76	5	93	53	6	8	31	1.57
6090277--6090333	11	5.2	11	71	0	51	54	7	5	33	1.50
6090224--6090343	44	2.8	44	75	12	122	53	6	8	31	1.57
6090637--6090715	22	3.6	22	71	10	72	49	7	6	36	1.57
6090681--6090731	22	2.3	22	79	0	57	47	3	7	41	1.51
6090647--6090734	44	2.0	44	84	0	113	47	5	5	40	1.51
6090760--6090997	22	10.8	22	73	8	144	42	8	8	39	1.66
6091386--6091441	21	2.7	21	85	0	76	51	5	8	33	1.56
6091386--6091467	10	8.3	10	73	15	55	53	6	7	32	1.53
6091496--6091537	22	1.9	22	90	0	66	38	2	19	40	1.64
6091557--6091640	22	3.8	22	76	14	75	47	8	7	36	1.61
6091498--6091602	52	2.0	52	80	7	115	41	4	15	38	1.68
6091567--6091771	22	9.3	22	71	10	123	46	6	8	38	1.61
6092181--6092226	21	2.2	20	81	11	56	43	8	13	34	1.74
6092189--6092229	21	2.0	21	95	0	73	41	4	12	41	1.64
6092266--6092397	40	3.3	39	76	16	126	54	6	0	38	1.31
6092263--6092433	80	2.1	78	82	8	209	53	6	0	39	1.31
6093838--6093907	29	2.4	30	83	7	90	60	8	1	30	1.35
6094535--6094563	7	4.3	7	95	4	51	0	10	0	89	0.48
6097686--6097727	13	3.2	13	83	9	50	16	0	2	80	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6097687--6097731	19	2.4	18	92	3	72	17	0	2	80	0.82
6108904--6109211	123	2.6	119	81	7	347	20	21	14	42	1.88
6109688--6109743	3	18.7	3	100	0	112	32	0	0	67	0.91
6110185--6110223	21	1.9	20	89	5	60	20	0	12	66	1.24
6112314--6112339	2	13.0	2	100	0	52	50	0	0	50	1.00
6117805--6117848	23	1.9	23	81	9	54	47	18	4	29	1.68
6120203--6120348	52	2.8	52	85	2	186	26	21	7	44	1.78
6120479--6120531	18	2.8	19	83	8	56	41	1	0	56	1.10
6120708--6120745	5	7.6	5	100	0	76	57	0	0	42	0.98
6123293--6123319	14	1.9	14	100	0	54	51	0	0	48	1.00
6125879--6125925	21	2.2	21	85	7	60	36	14	2	46	1.57
6129079--6129352	126	2.2	125	81	8	310	37	14	13	34	1.86
6129392--6129557	62	2.7	62	83	4	201	35	13	12	38	1.82
6129886--6129955	34	2.1	34	84	10	90	22	15	14	47	1.82
6131193--6131268	34	2.2	34	83	4	91	40	14	7	36	1.75
6131620--6131741	62	2.0	62	81	3	147	39	13	15	31	1.86
6131704--6131760	28	2.0	28	82	0	69	38	17	14	29	1.89
6133309--6133353	18	2.6	17	79	6	54	20	4	0	75	0.97
6134246--6134315	14	4.9	14	72	19	63	74	2	1	21	1.03
6134246--6134350	19	5.5	19	80	12	85	74	3	1	20	1.07
6134250--6134334	17	5.5	15	72	20	61	75	3	1	20	1.02
6134256--6134335	6	13.2	6	74	22	62	76	3	0	20	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6134266--6134329	13	4.8	13	72	14	58	76	4	0	18	0.95
6135162--6135324	3	58.0	3	68	15	89	60	6	1	30	1.33
6135694--6135816	55	2.2	55	81	5	133	44	15	17	22	1.86
6135897--6136011	56	2.1	56	83	6	144	42	19	19	19	1.89
6135954--6136241	115	2.5	116	76	5	289	37	17	23	20	1.94
6137006--6137114	56	2.0	55	87	1	155	16	13	10	59	1.60
6145579--6145683	44	2.4	43	84	7	140	33	18	10	38	1.85
6145837--6145899	3	20.7	3	96	3	117	31	0	1	66	1.01
6146416--6146441	10	2.6	10	100	0	52	15	0	7	76	0.99
6147009--6147048	18	2.2	19	86	13	57	70	0	7	22	1.12
6151580--6151624	20	2.2	20	88	0	63	64	6	4	24	1.37
6152144--6152199	25	2.2	25	81	6	60	66	1	1	30	1.12
6152559--6152595	19	1.9	19	88	0	56	51	0	5	43	1.24
6153485--6153600	30	3.9	30	71	10	85	40	11	3	44	1.57
6153759--6153842	20	4.2	20	77	17	75	64	8	3	23	1.37
6153788--6153842	21	2.6	21	88	5	76	65	5	3	25	1.31
6153786--6153851	20	3.2	20	85	4	87	63	9	3	24	1.38
6153969--6154004	18	2.0	19	89	10	58	55	0	0	44	0.99
6154064--6154100	18	2.2	17	90	9	58	5	10	5	78	1.08
6155724--6155748	12	2.1	12	100	0	50	32	8	24	36	1.84
6155786--6155835	21	2.4	21	93	0	82	20	4	8	68	1.32
6155806--6156760	126	7.7	124	73	12	564	36	10	11	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6155831--6156762	247	3.8	248	76	10	661	37	10	11	40	1.77
6156423--6156604	60	3.0	61	69	16	151	33	9	14	42	1.77
6161358--6161384	2	13.5	2	100	0	54	51	0	0	48	1.00
6161384--6161423	2	20.0	2	100	0	80	50	0	50	0	1.00
6161627--6161654	2	14.0	2	100	0	56	50	0	0	50	1.00
6162993--6163022	15	2.0	15	93	0	51	40	6	30	23	1.80
6165088--6165127	21	1.9	21	94	0	71	47	7	10	35	1.65
6173050--6173100	2	27.0	2	78	11	54	49	1	1	47	1.24
6173876--6173922	8	5.8	8	78	11	51	57	0	2	40	1.11
6174904--6174957	6	9.3	6	84	8	58	50	11	0	38	1.38
6174914--6174957	2	22.0	2	85	0	61	50	6	0	43	1.29
6181101--6181156	27	2.1	27	96	0	103	28	17	3	50	1.63
6182916--6182995	40	2.0	40	95	0	142	53	8	16	21	1.69
6183881--6183924	22	2.0	23	90	4	72	18	11	22	47	1.80
6187417--6187515	35	2.8	36	83	7	132	47	8	17	27	1.75
6187491--6187680	98	2.0	96	86	8	269	47	5	17	29	1.71
6187491--6187680	48	3.9	48	88	4	258	47	5	17	29	1.71
6187828--6187941	38	3.1	36	77	17	117	55	5	12	27	1.58
6187836--6187941	36	2.9	36	79	13	108	54	5	11	28	1.58
6188607--6188925	65	5.0	64	76	4	288	35	12	24	26	1.92
6188609--6188984	194	2.0	190	82	5	461	35	12	23	28	1.91
6192895--6192969	37	2.0	39	89	5	118	36	16	24	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6193040--6193068	15	2.0	15	93	6	51	37	6	27	27	1.82
6195161--6195394	117	2.0	117	100	0	468	41	21	12	24	1.88
6196424--6196457	7	4.9	7	92	0	50	70	5	23	0	1.09
6196884--6196923	14	3.1	14	86	13	59	57	0	0	42	0.98
6197083--6197167	7	12.0	7	69	16	50	69	0	3	27	1.05
6197127--6197169	21	2.0	22	86	13	63	72	0	4	23	1.04
6199016--6199059	21	2.0	22	86	4	63	47	0	2	50	1.13
6199043--6199097	27	2.0	27	82	6	67	58	1	0	40	1.09
6199211--6199252	20	2.1	20	86	8	59	66	0	4	28	1.12
6199479--6199523	21	2.1	21	84	8	56	42	0	17	40	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195