genome.fa.s112.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  53  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11078881--11078975	44	2.2	44	88	3	138	52	10	7	29	1.63
11078897--11078975	20	3.8	19	70	18	50	50	11	7	30	1.66
11078982--11079049	24	2.8	25	69	15	61	54	17	1	26	1.52
11079245--11079296	20	2.7	20	81	3	61	76	1	5	15	1.05
11079237--11079317	26	3.2	25	86	8	103	77	3	3	14	1.04
11079244--11079317	6	11.7	6	75	16	69	78	2	4	14	1.01
11080769--11080799	11	2.8	11	100	0	62	19	25	9	45	1.81
11082446--11082501	22	2.6	22	81	10	64	14	5	3	76	1.09
11082596--11082633	13	2.9	13	88	0	58	31	0	10	57	1.32
11083812--11083856	20	2.2	20	92	0	72	42	24	0	33	1.55
11086905--11087352	142	3.1	141	78	6	400	31	14	13	40	1.85
11088855--11088886	6	5.3	6	92	0	55	31	34	15	18	1.93
11088926--11089068	58	2.4	58	84	1	178	43	37	6	12	1.68
11089132--11089194	20	3.2	20	77	8	67	44	36	1	17	1.59
11089207--11089294	43	2.0	43	86	4	124	45	36	1	17	1.56
11089141--11089514	30	12.0	31	68	18	140	46	34	1	18	1.56
11089312--11089419	12	9.4	12	69	20	54	50	27	0	21	1.48
11089327--11089401	24	3.1	24	70	14	64	53	26	0	20	1.46
11089215--11089408	37	5.3	37	71	20	124	47	30	1	20	1.57
11089096--11089540	19	23.8	19	67	21	105	45	34	1	19	1.58
11089338--11089421	24	3.5	22	71	19	62	51	27	0	21	1.48
11089139--11089514	7	61.8	6	67	23	116	46	34	1	18	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11089437--11089498	24	2.6	24	79	5	72	45	41	0	12	1.42
11089357--11089515	17	9.1	17	70	17	87	47	35	0	16	1.52
11090131--11090170	20	2.0	20	90	0	62	60	30	0	10	1.30
11091567--11091612	12	3.8	12	80	5	56	73	2	10	13	1.17
11093218--11093362	43	3.3	43	78	11	116	22	13	8	55	1.66
11093893--11094057	63	2.6	64	77	6	174	41	12	10	34	1.78
11096084--11096127	13	3.4	13	80	0	52	15	0	13	70	1.17
11096668--11096699	16	2.1	16	88	11	50	34	6	0	59	1.23
11097270--11097340	6	10.7	7	85	8	62	15	9	1	73	1.16
11097263--11097341	12	5.9	14	72	24	55	13	11	1	73	1.16
11097283--11097349	36	1.9	35	82	14	86	16	7	1	74	1.11
11097295--11097348	14	3.7	14	82	2	54	16	5	1	75	1.07
11097361--11097386	3	8.7	3	100	0	52	30	0	0	69	0.89
11097613--11097649	18	2.1	18	90	5	58	67	5	2	24	1.25
11102014--11102064	20	2.6	19	85	14	68	80	1	15	1	0.89
11103532--11103599	22	3.0	22	72	8	64	29	5	17	47	1.71
11103508--11103578	24	3.0	24	71	8	65	33	4	14	47	1.63
11103848--11103912	17	3.8	17	73	18	55	29	6	13	50	1.66
11103827--11103963	70	2.0	70	84	5	179	34	8	11	45	1.72
11103902--11103943	17	2.4	18	88	4	59	35	11	9	42	1.74
11105237--11105292	23	2.4	23	87	3	76	19	3	14	62	1.46
11105249--11105293	23	1.9	23	95	4	81	17	2	15	64	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11105789--11105838	13	4.2	13	80	15	54	16	0	2	82	0.77
11105789--11105819	14	2.3	13	94	5	53	9	0	0	90	0.46
11105791--11105838	11	4.2	11	86	7	69	16	0	2	81	0.79
11105794--11105845	19	2.5	20	81	9	61	21	0	1	76	0.87
11106027--11106064	18	2.2	18	90	4	60	65	7	2	23	1.32
11106930--11107080	73	2.1	73	87	1	214	41	13	11	33	1.81
11110302--11110471	3	60.7	3	71	17	80	31	2	5	60	1.33
11110280--11110361	27	3.0	27	77	15	80	23	1	10	64	1.32
11110287--11110358	33	2.2	34	78	12	78	22	1	12	63	1.36
11110382--11110442	24	2.5	24	94	2	104	37	4	0	57	1.20
11111300--11111380	6	13.5	6	69	23	55	16	1	3	79	0.95
11116233--11116261	13	2.2	13	100	0	58	13	6	0	79	0.93
11116401--11116425	13	1.9	13	100	0	50	48	0	8	44	1.32
11117205--11117231	3	9.0	3	100	0	54	66	0	0	33	0.92
11118697--11118742	14	3.2	14	78	3	56	67	0	6	26	1.15
11119462--11119507	13	3.6	13	77	14	51	63	0	0	36	0.95
11124414--11124990	283	2.0	290	85	3	774	35	16	17	31	1.92
11141598--11141639	11	3.9	11	78	6	50	0	23	0	76	0.79
11142742--11142789	19	2.5	19	83	9	62	56	4	2	37	1.30
11142727--11142782	29	1.9	29	82	7	69	50	7	1	41	1.40
11142725--11142788	29	2.2	29	75	5	67	56	6	1	35	1.34
11142723--11142797	20	3.8	20	76	5	71	57	5	2	34	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11142834--11142881	22	2.3	20	89	10	78	41	0	10	47	1.37
11142871--11142917	19	2.5	19	79	6	51	53	4	2	40	1.32
11142911--11142953	18	2.4	17	81	11	50	65	2	2	30	1.18
11142969--11143002	16	2.2	16	89	5	52	67	5	0	26	1.13
11143134--11143179	21	2.2	20	84	3	56	23	0	10	65	1.24
11144998--11145052	24	2.3	24	75	12	58	36	1	0	61	1.06
11147226--11147266	2	21.5	2	90	9	59	43	0	2	53	1.13
11148337--11148376	17	2.4	17	82	0	53	40	0	2	57	1.12
11148769--11148804	14	2.6	14	95	0	63	61	0	2	36	1.11
11148861--11148929	26	2.7	25	86	8	95	43	0	4	52	1.21
11148854--11148936	25	3.3	26	83	11	102	45	0	3	50	1.19
11149023--11149160	23	5.3	24	76	19	111	39	2	1	56	1.20
11149023--11149198	41	4.3	41	73	20	145	41	2	1	55	1.20
11149023--11149203	82	2.2	80	80	7	204	42	2	1	54	1.20
11149044--11149191	31	4.8	31	76	6	95	42	2	1	53	1.23
11149278--11149339	19	3.1	19	79	13	63	35	1	3	59	1.23
11149512--11149559	12	3.5	14	76	23	57	41	4	0	54	1.20
11153158--11153891	368	2.0	367	98	0	1423	29	12	15	41	1.85
11157764--11157794	2	15.5	2	100	0	62	51	0	0	48	1.00
11160306--11160353	22	2.2	22	85	7	62	4	16	0	79	0.89
11160357--11160404	19	2.5	19	83	6	62	47	0	0	52	1.00
11161959--11161990	2	16.5	2	93	6	57	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11167639--11167720	43	1.9	43	89	0	128	15	28	9	46	1.78
11179798--11179885	44	2.0	44	97	0	167	26	17	22	34	1.96
11181276--11181325	25	2.0	25	100	0	100	36	8	16	40	1.77
11184677--11184711	3	11.7	3	100	0	70	68	0	0	31	0.90
11184943--11184976	3	11.3	3	100	0	68	67	0	0	32	0.91
11185045--11185091	14	3.3	14	79	8	51	34	0	4	61	1.15
11187579--11187661	13	6.4	13	76	18	59	72	2	0	25	0.97
11187579--11187655	33	2.4	33	81	14	97	70	2	0	27	1.01
11187594--11187654	21	3.1	19	78	17	63	75	3	0	21	0.94
11187597--11187643	14	3.5	13	85	8	58	72	4	0	23	1.02
11188447--11188539	3	32.7	3	79	14	108	62	2	2	33	1.19
11188964--11189170	55	3.8	55	76	10	181	41	15	21	21	1.90
11189086--11189221	55	2.5	54	80	3	148	38	13	24	23	1.91
11194684--11194777	19	4.7	19	74	19	84	76	2	2	19	0.99
11194688--11194780	11	7.9	11	76	15	64	77	2	2	18	0.97
11194702--11194780	36	2.3	34	85	10	99	78	1	1	18	0.89
11195606--11195641	5	7.2	5	93	0	63	58	2	0	38	1.13
11195611--11195656	20	2.3	20	85	7	58	56	6	2	34	1.37
11195674--11195700	12	2.2	12	100	0	54	74	7	0	18	1.05
11195631--11195688	31	1.9	30	89	3	89	62	10	1	25	1.37
11197974--11198030	30	1.9	30	89	7	89	52	15	3	28	1.59
11206403--11206558	78	2.0	77	92	1	258	32	28	19	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11208626--11208652	11	2.5	11	100	0	54	48	0	0	51	1.00
11217084--11217465	7	58.4	7	70	13	163	18	1	33	46	1.58
11217089--11217124	18	2.0	18	88	0	54	8	2	44	44	1.48
11217156--11217199	20	2.2	19	80	11	52	25	0	27	47	1.52
11217201--11217461	6	40.2	6	70	18	134	18	1	34	45	1.57
11217084--11217461	13	29.0	13	71	13	163	19	1	33	46	1.58
11217371--11217461	27	3.5	25	75	13	76	20	1	32	45	1.59
11231046--11231100	26	2.1	26	93	0	92	25	7	7	60	1.49
11235724--11235806	32	2.6	32	90	0	103	28	18	3	49	1.64
11237850--11237894	3	15.0	3	100	0	90	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195