genome.fa.s112.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  34  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7439944--7440006	11	5.7	11	78	0	63	52	3	4	39	1.38
7439944--7440006	22	2.9	22	80	4	83	52	3	4	39	1.38
7439755--7440128	190	2.0	190	84	2	500	48	5	8	37	1.55
7440073--7440125	22	2.4	22	74	0	52	49	5	7	37	1.55
7440444--7440517	31	2.3	32	81	13	89	45	0	0	54	1.00
7440478--7440587	24	4.5	24	69	17	75	51	0	1	45	1.18
7441252--7441305	11	4.9	11	76	0	54	53	5	1	38	1.35
7441249--7441500	22	11.5	22	73	4	132	49	4	8	37	1.53
7441332--7441500	66	2.6	67	79	4	191	50	4	9	36	1.54
7441581--7441676	22	4.4	22	75	0	66	46	7	6	39	1.57
7441628--7441802	22	8.2	21	70	13	99	47	6	5	40	1.52
7442297--7442343	21	2.2	21	77	7	51	48	12	6	31	1.66
7445820--7445909	33	2.7	33	74	6	83	36	22	5	35	1.78
7446825--7446888	28	2.3	27	81	10	76	45	1	1	51	1.20
7447197--7447239	18	2.5	17	85	7	59	41	9	2	46	1.48
7452243--7452347	53	2.0	53	96	0	192	30	16	16	37	1.90
7454603--7454654	27	1.9	27	96	0	95	30	28	9	30	1.89
7459991--7460078	10	9.0	10	71	16	60	31	2	3	62	1.24
7460020--7460079	19	3.2	18	76	19	61	35	1	1	61	1.16
7459991--7460079	14	6.5	14	71	19	55	31	2	3	62	1.23
7460240--7460282	22	2.0	22	85	0	59	51	2	0	46	1.13
7469967--7470006	21	1.9	21	94	0	71	17	25	7	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7469963--7470013	21	2.4	21	80	3	66	25	27	5	41	1.78
7478783--7478890	54	2.0	54	100	0	216	40	12	20	25	1.88
7479958--7479988	14	2.3	14	94	5	55	80	6	6	6	1.02
7480593--7480623	2	15.5	2	100	0	62	51	0	48	0	1.00
7481379--7481436	27	2.2	27	90	3	91	37	5	1	55	1.33
7482050--7482105	29	1.9	29	85	7	78	58	3	1	35	1.26
7482548--7482577	2	15.0	2	92	0	51	53	0	0	46	1.00
7482688--7482714	2	13.5	2	100	0	54	51	0	0	48	1.00
7483516--7483555	9	4.7	9	82	17	50	72	2	0	25	0.97
7484005--7484061	26	2.2	27	78	15	66	52	0	5	42	1.24
7484130--7484178	22	2.2	22	81	3	53	51	6	6	36	1.52
7484390--7484428	17	2.3	17	86	0	60	33	0	2	64	1.08
7485654--7485700	17	2.8	17	81	9	53	63	0	2	34	1.06
7485779--7485815	18	2.2	18	90	9	60	43	0	0	56	0.99
7487141--7487175	17	1.9	19	88	11	56	25	5	8	60	1.49
7498234--7498267	7	4.9	7	92	0	59	41	26	0	32	1.56
7503305--7503350	22	2.0	23	83	4	58	47	4	0	47	1.21
7503384--7503424	22	1.9	21	85	14	57	56	2	0	41	1.13
7503405--7503454	16	3.3	15	81	16	59	64	2	0	34	1.05
7503411--7503454	14	3.1	14	81	15	54	65	0	0	34	0.93
7503634--7503686	28	1.9	27	92	3	88	67	1	0	30	1.01
7503678--7503711	15	2.3	15	89	0	50	41	2	0	55	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7509980--7510008	2	14.5	2	100	0	58	48	0	0	51	1.00
7527185--7527225	2	20.5	2	85	9	57	46	2	2	48	1.28
7527985--7528042	12	4.7	12	80	4	53	58	0	0	41	0.98
7528742--7528799	24	2.3	25	79	5	64	79	0	12	8	0.94
7529209--7529248	17	2.4	16	84	12	53	80	0	0	20	0.72
7529573--7529618	20	2.3	20	88	0	65	71	2	6	19	1.18
7530915--7530952	19	2.0	20	84	5	51	71	5	5	18	1.25
7531016--7531085	35	2.0	35	94	0	122	54	2	8	34	1.46
7532978--7533082	14	7.9	13	70	13	63	42	0	4	51	1.29
7532980--7533056	28	2.8	28	90	2	111	42	1	5	50	1.32
7532978--7533030	2	26.5	2	84	7	63	45	0	3	50	1.19
7542747--7542773	2	13.5	2	100	0	54	51	0	0	48	1.00
7547098--7547134	16	2.2	18	90	9	60	67	0	2	29	1.04
7549465--7549512	8	6.0	8	97	0	78	25	8	37	29	1.85
7551658--7551692	6	5.8	6	100	0	70	34	0	17	48	1.47
7555064--7555104	19	2.2	19	91	8	66	4	7	26	60	1.43
7555064--7555124	10	6.3	10	69	7	54	4	6	24	63	1.38
7555077--7555128	19	2.7	20	81	6	61	5	5	21	67	1.33
7555091--7555128	20	1.9	19	89	5	58	5	5	18	71	1.25
7555101--7555147	24	2.0	24	83	4	60	4	4	17	74	1.14
7567374--7567503	43	3.0	43	86	1	172	30	13	14	41	1.85
7571511--7571578	12	5.5	12	74	6	64	26	1	8	63	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7571511--7571578	25	2.8	24	82	6	73	26	1	8	63	1.32
7571535--7571576	19	2.3	18	91	4	66	19	2	9	69	1.28
7572674--7572747	36	2.1	36	86	0	103	33	6	8	51	1.58
7572734--7572783	25	2.1	23	85	7	64	28	4	10	58	1.49
7572850--7573030	23	7.7	23	68	15	95	30	6	9	52	1.60
7572850--7572991	23	5.9	24	78	10	128	31	6	9	52	1.58
7576481--7576636	59	2.7	58	90	2	240	37	11	5	45	1.64
7576652--7576727	5	14.8	5	81	10	84	80	0	3	15	0.86
7576652--7576728	6	13.7	6	78	11	67	80	0	3	15	0.85
7576647--7576726	16	5.3	15	80	14	85	78	0	5	16	0.91
7576757--7576805	3	15.7	3	91	4	71	67	0	2	30	1.02
7577707--7577825	39	3.1	38	76	15	118	70	2	5	21	1.19
7578140--7578587	82	5.5	81	79	6	442	37	19	14	27	1.91
7578124--7578587	42	11.4	41	78	7	437	37	20	14	27	1.92
7578418--7578572	77	2.0	77	88	0	229	37	21	14	26	1.92
7578899--7578981	43	2.0	43	80	7	98	39	14	10	34	1.81
7583083--7583130	14	3.3	14	80	8	51	27	0	4	68	1.07
7586026--7586086	14	4.2	14	72	6	50	19	1	32	45	1.60
7586225--7586377	3	51.3	3	90	6	150	33	8	0	58	1.29
7587710--7587748	11	3.4	12	82	10	55	12	7	51	28	1.67
7587886--7587937	17	3.1	17	77	0	59	36	1	1	59	1.19
7588489--7588542	22	2.5	22	84	0	63	38	16	16	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7588164--7588685	132	4.0	132	76	5	484	41	18	18	22	1.90
7588634--7588729	44	2.2	45	83	9	126	34	18	20	26	1.96
7588796--7589004	110	1.9	110	80	0	247	41	17	19	22	1.90
7588994--7589102	22	5.1	20	75	10	74	35	15	20	28	1.93
7589314--7589749	128	3.4	128	82	4	506	35	15	14	34	1.88
7589981--7590020	18	2.2	18	86	0	53	45	12	20	22	1.84
7591584--7591625	16	2.6	16	80	0	57	4	7	2	85	0.80
7593275--7593311	16	2.3	16	100	0	74	45	13	10	29	1.77
7598053--7598091	16	2.4	16	100	0	78	48	7	7	35	1.61
7598224--7598265	14	2.9	15	82	10	52	21	0	23	54	1.44
7598665--7598707	23	1.9	22	90	4	68	20	4	2	72	1.14
7600532--7600559	7	4.0	7	100	0	56	57	0	0	42	0.99
7603659--7603706	18	2.8	16	84	15	60	37	0	0	62	0.95
7603673--7603705	16	2.1	15	94	5	57	39	0	0	60	0.97
7604812--7604859	25	1.9	25	83	8	62	41	0	6	52	1.27
7605362--7605434	16	4.6	15	77	14	67	20	0	4	75	0.97
7605376--7605436	6	9.7	6	75	16	52	21	0	3	75	0.94
7605362--7605436	17	4.5	17	76	17	59	21	0	4	74	0.98
7605403--7605545	4	35.5	4	70	15	57	30	1	3	65	1.18
7605488--7605550	25	2.7	24	81	13	69	34	0	1	63	1.04
7605419--7605571	82	1.9	79	82	14	188	29	1	3	65	1.19
7605624--7605673	3	16.7	3	95	0	91	30	0	2	68	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7606135--7606182	20	2.5	20	87	12	73	41	16	16	25	1.89
7606604--7606678	5	14.4	5	75	15	64	13	5	2	78	1.02
7606597--7606670	12	6.8	11	74	14	57	13	6	1	78	1.01
7606700--7606864	58	2.8	58	85	9	217	43	7	13	35	1.73
7620769--7620807	20	2.1	18	90	9	60	84	0	10	5	0.76
7621882--7622161	44	6.3	44	77	7	210	26	12	13	47	1.79
7621886--7622123	88	2.7	90	77	5	241	26	12	12	48	1.76
7624408--7624667	123	2.1	125	80	8	282	38	9	7	44	1.65
7624563--7624740	63	2.9	62	77	7	182	39	7	9	43	1.66
7625099--7625151	24	2.2	25	87	12	76	26	1	11	60	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195