Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  154  of  195  ( 23297 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25767923--25767983
30
2.0
30
90
0
95
40
13
21
24
1.88
25768098--25768131
12
2.8
12
86
0
50
26
32
5
35
1.81
25769105--25769270
73
2.2
73
79
5
181
42
13
25
18
1.87
25769606--25769633
2
14.0
2
100
0
56
50
0
0
50
1.00
25777267--25777425
79
2.0
79
87
2
230
27
23
10
38
1.88
25782370--25782396
2
13.5
2
100
0
54
51
0
0
48
1.00
25787451--25787475
10
2.5
10
100
0
50
84
0
0
16
0.63
25787692--25787733
21
2.0
21
86
9
59
52
0
0
47
1.00
25788919--25788964
23
2.0
23
84
12
60
23
2
6
67
1.25
25794604--25794652
20
2.5
20
83
12
57
30
12
4
53
1.57
25794627--25794665
21
1.9
20
84
5
51
33
7
7
51
1.59
25799637--25799681
23
2.0
23
86
8
65
13
20
8
57
1.62
25800606--25800746
74
1.9
73
82
4
176
34
8
5
51
1.56
25800664--25800991
135
2.5
129
81
11
378
32
7
6
52
1.57
25800761--25800878
60
2.0
60
83
5
148
33
7
5
54
1.51
25800885--25801035
54
2.7
55
77
16
134
29
7
8
54
1.59
25802677--25802725
15
3.1
15
86
11
71
42
18
12
26
1.85
25802678--25802761
17
5.1
17
79
14
79
42
16
14
26
1.86
25802699--25802781
17
4.9
17
77
2
69
43
14
15
26
1.85
25802952--25803082
17
7.7
17
71
6
68
44
10
16
28
1.81
25803028--25803118
17
5.5
17
67
3
60
45
10
12
31
1.76
25803017--25803130
34
3.4
34
70
6
97
44
11
12
31
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25803210--25803276
22
3.0
23
72
20
70
40
11
10
37
1.77
25807589--25807619
15
2.1
14
94
5
53
74
0
9
16
1.07
25808744--25808957
75
2.8
75
85
5
265
34
8
7
49
1.62
25808909--25809048
53
2.6
54
80
4
165
30
11
7
50
1.66
25809698--25809748
25
2.0
25
92
0
84
13
5
47
33
1.67
25819748--25819773
2
13.0
2
100
0
52
50
0
0
50
1.00
25820315--25820404
24
3.6
24
75
19
85
35
1
0
63
1.02
25821466--25821828
179
2.0
181
91
5
588
39
19
15
25
1.91
25829030--25829064
10
3.4
11
92
7
56
88
0
11
0
0.51
25829880--25829906
14
1.9
14
100
0
54
7
11
7
74
1.23
25835621--25835663
15
2.9
15
82
6
52
18
0
30
51
1.47
25835646--25835692
24
2.0
24
91
0
76
25
0
27
46
1.53
25835957--25836007
19
2.7
19
82
8
61
25
1
5
66
1.24
25836055--25836105
22
2.3
22
82
3
57
54
7
1
35
1.40
25836955--25836994
19
2.1
19
95
0
71
12
10
47
30
1.74
25837095--25837139
12
3.8
12
80
11
56
40
2
4
53
1.33
25837659--25838126
102
4.6
102
85
0
567
47
12
17
23
1.81
25838346--25838405
22
2.7
22
81
0
66
26
23
23
26
2.00
25838699--25838744
23
2.0
23
86
0
65
26
19
26
28
1.99
25838368--25838833
220
2.1
220
86
3
634
38
20
19
21
1.94
25838368--25838846
111
4.3
109
79
5
491
37
20
19
21
1.94
25838729--25838978
132
1.9
131
81
3
304
39
17
20
23
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25838597--25839074
242
2.0
242
83
4
608
39
17
19
23
1.92
25843032--25843130
15
6.4
15
73
17
87
25
1
27
46
1.59
25843032--25843130
16
6.4
16
76
13
84
25
1
27
46
1.59
25843032--25843130
31
3.2
31
75
16
89
25
1
27
46
1.59
25843408--25843461
19
2.7
21
83
11
60
31
1
3
62
1.23
25843401--25843459
22
2.8
21
75
15
59
28
1
3
66
1.18
25844515--25844613
3
32.0
3
72
13
76
38
2
2
57
1.22
25845154--25845185
11
2.8
12
86
13
50
37
6
9
46
1.61
25847946--25847970
10
2.5
10
100
0
50
80
0
0
20
0.72
25848762--25848820
26
2.3
26
84
0
73
20
5
23
50
1.67
25849736--25849836
19
5.2
19
72
8
69
16
8
23
50
1.73
25849737--25849836
39
2.6
39
75
12
98
17
9
24
50
1.74
25849803--25849869
19
3.5
19
73
20
68
29
19
13
37
1.90
25850351--25850388
1
38.0
1
100
0
76
100
0
0
0
0.00
25851821--25851898
20
3.9
19
73
18
63
28
1
0
70
0.95
25851818--25851905
13
6.5
13
79
15
74
26
1
0
72
0.91
25852664--25852756
35
2.7
35
87
0
123
51
12
20
15
1.75
25852799--25852848
21
2.4
21
82
0
55
64
8
10
18
1.48
25853018--25853490
32
14.7
33
73
11
284
33
14
14
36
1.87
25853018--25853505
64
7.6
62
76
11
344
33
14
14
36
1.87
25853250--25853485
130
1.8
129
84
6
325
33
13
16
36
1.87
25853793--25853865
22
3.3
22
69
7
58
28
19
20
31
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25853794--25853879
44
2.0
44
83
0
109
26
18
22
32
1.97
25854004--25854065
32
1.9
33
86
3
90
25
17
22
33
1.96
25854974--25855053
6
13.0
6
72
13
56
3
18
1
76
1.01
25854981--25855060
30
2.6
32
79
18
98
5
18
1
75
1.06
25854981--25855060
31
2.6
32
81
13
98
5
18
1
75
1.06
25855016--25855077
25
2.5
23
80
17
63
6
22
0
70
1.09
25855022--25855080
22
2.7
20
76
19
55
6
22
0
71
1.09
25855408--25855458
19
2.6
19
75
19
50
3
11
17
66
1.38
25855538--25855599
10
5.9
11
78
12
60
1
16
1
80
0.87
25855538--25855601
29
2.2
29
83
10
78
1
15
1
81
0.85
25855538--25855598
5
11.8
5
77
14
54
1
16
1
80
0.88
25856238--25856272
9
3.8
9
88
7
52
0
14
0
85
0.59
25857065--25857114
6
8.7
6
80
6
50
4
16
0
80
0.87
25857065--25857114
23
2.2
23
82
7
57
4
16
0
80
0.87
25858528--25858574
3
15.7
3
100
0
94
34
0
0
65
0.93
25861903--25861946
22
2.0
22
82
8
54
52
9
9
29
1.64
25863713--25863754
19
2.2
19
91
8
68
35
16
9
38
1.81
25866287--25866391
53
2.0
52
86
1
147
25
16
8
49
1.73
25869816--25869915
6
16.3
6
69
14
62
23
1
4
72
1.08
25869814--25869920
24
4.3
24
69
14
83
23
0
3
71
1.07
25869818--25869919
10
10.3
10
69
20
63
23
0
3
71
1.09
25869820--25869915
30
3.4
28
75
15
81
23
1
4
70
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25869852--25869887
19
1.9
19
94
5
65
25
0
2
72
0.98
25869850--25869921
19
4.1
17
74
19
58
22
0
5
72
1.05
25876938--25877189
120
2.1
120
98
0
486
55
29
2
11
1.48
25877847--25877891
16
2.8
18
78
21
55
26
0
2
71
0.98
25877822--25877872
20
2.6
20
78
3
50
25
1
0
72
0.95
25879865--25879893
13
2.1
14
93
6
51
24
0
0
75
0.80
25889592--25889634
16
2.7
16
85
7
61
79
6
4
9
1.06
25889623--25889651
11
2.7
11
94
5
51
86
0
6
6
0.72
25890857--25891222
171
2.1
170
84
3
468
23
20
12
43
1.85
25891252--25891336
37
2.3
37
81
2
91
20
23
9
47
1.79
25895697--25895757
25
2.5
25
83
2
70
57
1
3
37
1.25
25898772--25898866
46
2.0
47
82
6
113
24
2
25
48
1.62
25898842--25898918
15
5.1
15
75
13
59
23
3
24
48
1.68
25898842--25898912
30
2.4
31
78
7
74
22
4
23
49
1.67
25898842--25899048
98
2.1
98
79
8
217
20
3
26
50
1.64
25899147--25899219
30
2.5
30
75
2
76
20
2
28
47
1.64
25899350--25899388
3
12.7
3
83
5
51
25
0
5
69
1.09
25899366--25899424
6
9.8
6
83
10
50
16
0
13
69
1.19
25899399--25899439
18
2.4
17
92
8
66
17
0
7
75
1.02
25899822--25899859
11
3.5
11
86
13
53
86
0
0
13
0.56
25899822--25899887
17
4.0
16
77
11
71
80
1
4
13
0.94
25899824--25899859
6
6.2
6
90
6
56
86
0
0
13
0.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25901103--25901164
6
10.7
6
83
13
76
0
0
19
80
0.71
25901104--25901164
5
11.8
5
83
13
63
0
0
19
80
0.72
25901103--25901164
23
2.7
23
87
9
90
0
0
19
80
0.71
25901238--25901386
73
2.0
73
81
2
174
51
15
16
17
1.78
25901242--25901389
36
4.0
37
69
6
95
51
15
16
16
1.77
25901528--25901604
28
2.5
32
75
20
90
31
15
19
33
1.93
25901541--25901596
28
2.0
28
92
0
94
35
16
21
26
1.94
25901656--25901731
33
2.3
33
79
0
89
26
17
23
32
1.96
25901757--25901916
33
5.0
33
69
17
120
31
16
20
31
1.95
25901754--25901843
28
3.0
28
76
16
74
32
15
23
28
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195