genome.fa.s112.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  98  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17752347--17752404	26	2.2	26	75	0	62	60	8	6	24	1.51
17755395--17755444	26	1.9	26	95	0	91	24	26	20	30	1.98
17758509--17758561	26	2.0	26	100	0	106	26	26	20	26	1.99
17759244--17762564	871	3.8	865	86	5	4362	26	23	24	25	2.00
17761872--17761924	26	2.0	26	89	7	81	26	26	18	28	1.98
17762599--17762651	26	2.0	26	92	0	88	28	24	16	30	1.97
17764372--17764424	26	2.0	26	92	7	90	30	26	16	26	1.97
17764406--17765634	612	2.0	617	86	3	1719	29	21	22	25	1.99
17767289--17767347	26	2.2	27	78	3	66	61	10	6	22	1.51
17766135--17770431	700	6.1	712	86	3	5572	27	23	22	26	1.99
17771394--17771446	26	2.0	26	92	0	88	33	26	13	26	1.93
17774354--17774717	185	2.0	184	85	2	489	21	30	28	20	1.98
17775558--17775610	26	2.0	26	92	0	88	32	24	15	28	1.95
17776442--17776494	26	2.0	26	96	0	97	28	26	18	26	1.98
17774851--17777061	895	2.5	886	88	3	3235	26	23	23	26	2.00
17777158--17777210	26	2.0	26	96	0	97	28	26	18	26	1.98
17776420--17777772	715	1.9	716	89	2	2110	28	22	22	26	1.99
17778055--17778107	26	2.0	26	100	0	106	26	22	24	26	2.00
17779720--17779798	26	3.0	26	92	0	122	30	24	17	27	1.97
17781531--17781580	26	1.9	26	91	0	82	30	22	16	32	1.95
17779216--17784092	890	5.4	890	83	5	5933	26	24	23	25	2.00
17782417--17782469	26	2.0	26	81	0	61	28	22	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17785017--17785063	20	2.3	20	100	0	94	29	10	42	17	1.82
17789876--17789931	26	2.2	26	93	0	94	30	23	17	28	1.97
17790774--17790829	26	2.2	26	93	0	94	28	25	19	26	1.99
17791664--17791715	26	2.0	26	88	0	77	32	25	17	25	1.97
17792539--17792620	26	3.2	26	91	0	128	28	25	19	26	1.99
17793447--17793502	26	2.2	26	87	6	78	35	23	16	25	1.94
17789815--17801402	895	12.9	883	78	8	10418	25	24	24	25	2.00
17794323--17794378	26	2.2	26	93	0	94	28	23	21	26	1.99
17795209--17795285	26	3.0	26	92	0	127	28	24	18	28	1.98
17796127--17796178	25	2.0	26	88	3	79	26	23	21	28	1.99
17795968--17796384	183	2.3	185	84	2	552	22	28	27	21	1.99
17798827--17798879	26	2.0	26	96	0	97	24	28	20	26	1.99
17799722--17799773	26	2.0	26	96	0	95	25	28	19	26	1.98
17789811--17796206	877	7.2	894	82	7	7006	26	24	23	25	2.00
17800617--17800669	26	2.0	26	88	0	79	26	24	16	32	1.97
17804341--17804393	26	2.0	26	92	0	88	28	26	20	24	1.99
17804510--17805043	265	2.0	265	92	0	890	24	22	23	29	1.99
17806123--17806175	26	2.0	26	96	0	97	26	24	20	28	1.99
17807703--17807756	26	2.1	26	100	0	108	24	25	22	27	2.00
17809503--17809555	26	2.0	26	92	0	88	28	24	18	28	1.98
17810408--17810458	26	2.0	26	88	0	75	29	21	17	31	1.96
17807618--17816020	895	9.4	895	85	3	10679	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17813086--17813138	26	2.0	26	96	0	97	26	28	18	26	1.98
17813981--17814033	26	2.0	26	92	0	88	30	26	16	26	1.97
17815776--17815828	26	2.0	26	92	0	88	28	24	20	26	1.99
17815784--17816262	245	2.0	242	87	3	685	18	23	33	24	1.97
17816920--17816975	26	2.2	26	93	0	94	28	21	21	28	1.99
17817808--17817860	26	2.0	26	85	0	70	32	24	15	28	1.95
17816031--17819504	892	3.9	882	84	4	4326	25	24	24	25	2.00
17820186--17820235	26	1.9	26	95	0	91	26	24	22	28	1.99
17821956--17822034	26	3.0	26	96	0	140	29	18	21	30	1.97
17822879--17822931	26	2.0	26	96	0	97	28	26	18	26	1.98
17823777--17823827	24	2.0	25	88	7	77	25	25	21	27	1.99
17821227--17824808	898	4.0	886	82	5	4132	25	24	23	25	2.00
17824667--17824719	26	2.0	26	96	0	97	26	24	20	28	1.99
17826072--17826124	26	2.0	26	85	7	72	28	24	20	26	1.99
17826963--17827015	26	2.0	26	96	0	97	26	24	20	28	1.99
17825194--17828647	891	3.8	888	84	5	4083	26	24	23	25	2.00
17827993--17828021	11	2.6	11	100	0	58	27	34	31	6	1.83
17830358--17830410	26	2.0	26	96	0	97	26	24	20	28	1.99
17830199--17830599	185	2.2	185	88	0	595	21	28	27	22	1.99
17830543--17830595	26	2.0	26	92	0	88	28	24	18	28	1.98
17831164--17831242	26	3.0	26	100	0	158	26	26	20	26	1.99
17831309--17831336	14	2.0	14	100	0	56	14	35	35	14	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17833668--17833720	26	2.0	26	92	0	88	24	26	20	28	1.99
17831330--17857781	899	29.1	896	73	12	14501	25	24	24	25	2.00
17834571--17834621	26	2.0	26	96	0	93	29	27	15	27	1.96
17837740--17839137	705	2.0	705	89	1	2131	27	23	23	26	2.00
17839348--17839399	26	2.0	26	88	0	77	28	23	19	28	1.98
17841124--17841176	26	2.0	26	92	0	88	26	22	20	30	1.98
17838398--17847122	867	10.0	863	83	7	8939	25	24	24	25	2.00
17846338--17846390	26	2.0	26	88	0	79	24	22	22	30	1.99
17847944--17847994	26	2.0	26	88	0	75	29	25	17	27	1.98
17848490--17848540	26	2.0	26	100	0	102	25	27	19	27	1.99
17849386--17849438	26	2.0	26	96	0	97	28	26	18	26	1.98
17851820--17851845	4	6.5	4	100	0	52	0	73	26	0	0.84
17852025--17852077	26	2.0	26	96	0	97	26	28	18	26	1.98
17853796--17853845	26	1.9	26	95	0	91	36	26	10	28	1.88
17848000--17857781	895	11.0	875	83	6	11086	25	24	23	25	2.00
17855563--17855613	26	2.0	26	92	0	84	31	25	15	27	1.96
17854685--17857780	892	3.5	887	85	4	4094	25	24	24	25	2.00
17856453--17856503	26	2.0	26	96	0	93	25	25	19	29	1.99
17857352--17857404	26	2.0	26	92	0	88	28	24	18	28	1.98
17858674--17858726	26	2.0	26	92	0	88	26	22	20	30	1.98
17857977--17860403	891	2.7	893	86	2	3342	26	24	23	26	2.00
17860435--17860487	26	2.0	26	92	7	90	28	22	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17860458--17860900	220	2.0	221	85	1	593	18	23	33	23	1.97
17861592--17862238	220	2.9	219	85	3	861	19	24	32	23	1.97
17862554--17862606	26	2.0	26	92	0	88	26	22	20	30	1.98
17863523--17869485	873	6.8	872	87	4	7576	25	24	23	25	2.00
17866140--17866192	26	2.0	26	88	0	79	26	24	20	28	1.99
17865274--17869486	898	4.7	894	86	4	5669	26	24	24	25	2.00
17870578--17870630	26	2.0	26	96	0	97	30	24	16	28	1.97
17872131--17872180	26	1.9	26	95	0	91	28	24	18	30	1.97
17873019--17873071	26	2.0	26	96	0	97	28	24	20	26	1.99
17874819--17874871	26	2.0	26	92	0	88	28	24	18	28	1.98
17875718--17875770	26	2.0	26	92	0	88	28	24	18	28	1.98
17876619--17876671	26	2.0	26	92	0	88	32	24	15	28	1.95
17872011--17888782	902	18.8	898	85	4	20701	25	24	24	25	2.00
17877521--17877572	26	2.0	26	88	7	79	32	26	13	26	1.94
17878420--17878472	26	2.0	26	85	0	70	32	26	16	24	1.97
17879314--17879366	26	2.0	26	96	0	97	28	26	18	26	1.98
17880210--17880262	26	2.0	26	96	0	97	26	26	18	28	1.98
17881098--17881149	26	2.0	26	96	0	95	28	21	19	30	1.97
17882876--17882926	26	2.0	26	96	0	93	27	23	19	29	1.98
17883778--17883830	26	2.0	26	92	0	88	28	22	22	26	1.99
17885520--17885572	26	2.0	26	96	0	97	26	24	22	26	2.00
17887269--17887321	26	2.0	26	96	0	97	26	26	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17888350--17889314	535	1.8	537	89	1	1535	31	19	21	27	1.97
17889381--17889412	12	2.7	12	90	0	55	0	53	31	15	1.43
17890458--17890510	26	2.0	26	96	0	97	26	24	20	28	1.99
17891158--17891189	12	2.7	12	90	0	55	0	53	31	15	1.43
17892243--17892295	26	2.0	26	85	0	70	32	22	18	26	1.97
17888777--17897611	900	9.9	899	83	5	10584	25	24	23	25	2.00
17895782--17895834	26	2.0	26	100	0	106	26	26	20	26	1.99
17894045--17897611	904	4.0	899	85	4	4696	25	25	23	25	2.00
17897683--17897714	14	2.3	14	94	0	55	15	34	34	15	1.90
17898113--17898147	14	2.5	14	95	0	61	11	34	31	22	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195