genome.fa.s112.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  17  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3904433--3904468	11	3.2	11	88	7	54	66	0	2	30	1.06
3904432--3904461	12	2.5	12	88	0	51	70	0	3	26	1.03
3907090--3907138	21	2.4	19	78	18	53	38	0	0	61	0.96
3907090--3907145	10	5.4	10	80	14	60	39	0	0	60	0.97
3907100--3907152	21	2.4	22	84	15	74	41	0	0	58	0.98
3908025--3908060	2	18.5	2	94	5	65	50	50	0	0	1.00
3908257--3908296	10	3.7	10	81	18	53	50	2	0	47	1.14
3908901--3908939	21	1.9	21	84	5	53	12	7	12	66	1.43
3911712--3911764	23	2.3	23	86	0	70	45	3	0	50	1.19
3916444--3916483	21	1.9	21	84	0	53	7	25	25	42	1.80
3917273--3917337	23	2.8	22	80	15	60	55	3	0	41	1.15
3922170--3922235	19	3.9	17	81	16	75	46	0	1	51	1.10
3922227--3922273	18	2.6	18	86	10	60	38	2	6	53	1.39
3927098--3927157	25	2.3	27	80	5	70	51	1	0	46	1.10
3927429--3927460	2	16.5	2	93	6	57	50	0	0	50	1.00
3928428--3928454	2	13.5	2	100	0	54	48	0	0	51	1.00
3930612--3930658	24	1.9	24	83	12	60	68	0	4	27	1.08
3931240--3931515	59	4.6	60	81	8	314	48	3	9	38	1.54
3931240--3931515	60	4.6	59	80	9	301	48	3	9	38	1.54
3932278--3932309	4	8.0	4	92	0	55	21	0	3	75	0.95
3932305--3932336	3	10.7	3	100	0	64	31	0	0	68	0.90
3932408--3932707	57	5.1	57	81	8	327	50	4	8	37	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3932415--3932708	118	2.5	115	82	10	357	51	4	8	36	1.52
3932642--3932685	16	2.8	15	89	6	61	59	0	2	38	1.10
3933529--3933577	23	2.1	24	88	3	73	57	0	0	42	0.99
3934921--3934965	16	2.6	17	80	13	56	66	8	0	24	1.20
3935717--3935762	18	2.6	18	86	3	58	60	0	0	39	0.97
3939764--3939798	13	2.6	14	86	9	54	85	8	5	0	0.73
3943734--3943784	23	2.2	23	89	0	75	45	1	3	49	1.32
3957464--3957505	18	2.4	17	84	7	57	61	0	0	38	0.96
3957975--3958027	23	2.3	23	81	9	65	35	5	0	58	1.22
3969261--3969307	3	15.7	3	86	0	67	25	38	0	36	1.56
3969258--3969310	12	4.4	12	95	0	97	22	41	0	35	1.54
3973099--3973164	16	3.9	17	76	9	64	25	3	3	68	1.19
3974149--3974177	12	2.3	13	94	5	51	58	0	0	41	0.98
3974282--3974345	10	5.6	11	72	15	51	31	3	1	64	1.19
3974300--3974346	24	2.0	24	87	4	69	36	4	2	57	1.30
3974299--3974357	24	2.4	25	77	13	68	37	5	1	55	1.32
3987372--3987407	18	2.0	18	94	0	63	30	5	36	27	1.80
3988627--3988663	2	18.5	2	94	0	65	2	48	0	48	1.15
3988671--3988696	3	8.7	3	100	0	52	0	34	0	65	0.93
4003124--4003185	4	15.5	4	100	0	124	50	0	24	25	1.50
4003172--4003775	212	3.0	203	91	4	970	30	17	19	33	1.94
4003382--4003775	196	2.0	196	96	0	725	28	17	19	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4008203--4008237	3	11.7	3	100	0	70	68	31	0	0	0.90
4009463--4009611	77	2.0	72	86	8	203	35	13	14	36	1.85
4009559--4009731	85	2.0	85	93	0	292	39	12	12	36	1.80
4010689--4010741	25	2.1	26	82	3	63	33	5	9	50	1.58
4017818--4017861	20	2.2	20	84	11	56	29	0	6	63	1.20
4019261--4019326	30	2.2	30	88	0	105	42	3	1	53	1.25
4019293--4019351	21	2.9	21	75	20	54	38	1	3	55	1.26
4019356--4019390	17	2.1	17	94	0	61	54	2	0	42	1.15
4019463--4019520	18	3.2	18	83	9	82	48	8	0	43	1.34
4019465--4019523	17	3.4	17	84	9	82	50	8	0	40	1.33
4020633--4020660	9	3.1	9	100	0	56	0	32	10	57	1.33
4020804--4020964	66	2.4	66	91	2	270	13	24	18	42	1.87
4020745--4021057	165	1.9	164	80	3	369	14	24	17	42	1.87
4021541--4021641	51	2.0	51	94	0	175	15	24	21	37	1.93
4039926--4039958	17	2.0	17	94	5	59	24	30	6	39	1.79
4042473--4042508	19	1.9	18	94	5	63	36	0	0	63	0.94
4044297--4044339	22	1.9	22	90	4	68	53	4	6	34	1.49
4044437--4044604	18	9.2	18	73	17	141	53	1	0	44	1.15
4044446--4044610	13	13.6	12	66	23	71	54	1	0	43	1.15
4044446--4044615	92	1.9	88	84	9	227	54	1	0	42	1.15
4044493--4044625	28	4.6	28	75	15	78	54	2	0	42	1.18
4044654--4044741	19	4.9	18	67	17	58	43	1	1	54	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4044710--4044742	15	2.1	16	94	5	59	45	0	0	54	0.99
4044713--4044798	26	3.3	25	74	16	77	47	2	0	50	1.14
4044720--4044785	26	2.6	26	85	4	82	48	3	0	48	1.17
4045049--4045087	20	2.0	21	90	10	64	33	0	0	66	0.92
4051710--4051742	11	3.0	11	91	8	50	81	0	18	0	0.68
4056798--4056824	14	1.9	14	100	0	54	92	0	7	0	0.38
4061806--4062385	203	3.0	191	75	13	546	43	17	10	28	1.82
4065959--4066021	23	2.7	23	76	18	60	46	3	1	49	1.27
4066165--4066198	16	2.2	16	89	5	52	44	0	2	52	1.16
4066757--4066856	29	3.5	29	73	8	89	52	10	10	28	1.67
4071495--4072003	183	2.6	196	79	10	591	42	16	11	29	1.83
4072519--4072560	12	3.4	12	86	3	57	40	2	9	47	1.49
4073591--4073620	4	7.2	4	92	7	51	76	0	0	23	0.78
4073591--4073620	13	2.4	13	94	5	53	76	0	0	23	0.78
4074495--4074523	13	2.2	13	100	0	58	62	6	0	31	1.22
4074700--4074970	136	2.0	134	95	1	488	35	12	16	34	1.87
4075791--4075853	23	2.7	23	76	18	60	46	3	1	49	1.27
4076000--4076033	16	2.2	16	89	5	52	44	0	2	52	1.16
4076616--4076684	31	2.2	31	87	5	95	50	11	7	30	1.65
4080989--4081048	29	2.1	29	100	0	120	30	6	25	38	1.81
4080737--4081300	281	2.0	281	97	0	1065	30	15	26	27	1.96
4082886--4082933	12	3.8	12	83	5	60	35	0	14	50	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4082886--4082935	24	2.0	26	88	7	77	34	0	14	52	1.42
4085762--4085855	46	2.0	46	95	0	170	39	23	13	23	1.90
4089192--4089248	30	1.9	30	85	7	80	54	3	0	42	1.17
4090814--4090844	15	2.1	14	94	5	53	61	0	0	38	0.96
4090985--4091034	11	4.5	11	76	18	59	26	46	8	20	1.78
4090982--4091034	22	2.4	23	78	18	67	24	47	7	20	1.76
4100235--4100512	33	8.5	33	82	4	222	30	17	14	37	1.89
4100235--4100518	65	4.3	66	78	4	270	30	17	14	37	1.90
4100232--4100518	98	2.9	96	80	7	326	31	17	14	37	1.89
4101050--4101245	87	2.3	87	88	3	279	22	18	17	40	1.91
4101243--4101429	87	2.1	87	89	1	277	21	18	18	41	1.90
4101147--4101356	111	1.9	111	85	3	289	22	17	19	40	1.91
4101041--4101554	198	2.6	198	83	3	644	22	18	18	40	1.91
4101639--4101689	24	2.1	24	81	0	57	19	25	17	37	1.94
4101330--4101776	111	4.0	111	79	3	454	22	19	17	40	1.92
4101663--4101850	87	2.2	87	81	3	209	22	20	17	40	1.91
4101768--4101971	109	1.9	109	84	2	275	24	18	16	41	1.90
4101876--4102041	86	1.9	87	82	3	210	22	16	18	41	1.90
4101984--4102229	109	2.3	109	82	6	293	23	18	16	41	1.90
4102299--4102372	37	2.0	37	89	0	112	14	25	17	41	1.88
4102588--4102618	15	2.1	14	94	5	53	61	0	0	38	0.96
4104105--4104159	15	3.7	14	79	13	65	52	32	0	14	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4105756--4106240	263	1.8	262	88	3	751	43	4	7	44	1.54
4106238--4106287	19	2.6	20	71	6	50	54	0	0	46	1.00
4109408--4109436	13	2.3	13	94	5	51	41	6	6	44	1.58
4110439--4110485	19	2.3	22	85	10	64	42	0	0	57	0.98
4110546--4110595	18	2.9	16	78	16	55	34	0	2	64	1.05
4110545--4110590	19	2.6	17	80	12	58	28	0	2	69	1.00
4110545--4110596	16	3.1	16	71	15	50	32	0	1	65	1.04
4111409--4111492	42	2.0	42	88	0	123	22	34	9	33	1.87
4117096--4117120	12	2.1	12	100	0	50	32	8	8	52	1.60
4118446--4118480	18	2.0	17	94	5	61	45	0	0	54	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195