genome.fa.s112.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  140  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23571648--23571778	34	3.9	32	83	4	91	21	20	9	48	1.77
23571653--23571897	68	3.6	67	78	9	248	21	22	8	47	1.78
23571676--23571884	34	6.2	34	81	1	186	20	24	10	44	1.82
23572141--23572182	13	3.2	13	76	10	50	66	0	0	33	0.92
23573340--23573377	3	12.7	3	100	0	76	34	0	0	65	0.93
23573598--23573643	18	2.6	17	80	16	58	71	2	4	21	1.14
23573781--23573890	14	7.7	14	69	11	62	50	28	0	20	1.54
23573780--23573892	28	4.0	28	77	3	136	49	30	0	19	1.54
23573912--23573963	26	2.0	25	82	10	61	36	30	5	26	1.80
23573971--23574043	37	1.9	39	83	5	96	45	30	1	23	1.61
23574140--23574189	15	3.3	15	85	2	55	50	22	0	28	1.49
23574161--23574233	15	5.0	15	72	8	62	52	20	0	27	1.47
23574185--23574243	29	2.0	29	90	0	91	49	22	0	28	1.50
23583806--23583874	35	2.0	35	85	5	95	28	10	15	44	1.79
23587277--23587312	3	12.3	3	91	5	56	33	2	0	63	1.08
23587375--23587399	9	2.8	9	100	0	50	8	8	0	84	0.79
23587374--23587423	17	2.7	18	81	12	57	6	16	2	76	1.08
23588109--23588148	10	3.8	11	90	6	57	15	0	0	85	0.61
23588111--23588150	17	2.3	18	87	12	57	15	0	0	85	0.61
23589053--23589153	43	2.3	44	79	5	116	23	9	6	59	1.54
23597377--23597404	9	3.1	9	100	0	56	10	35	21	32	1.88
23598762--23598918	60	2.7	58	86	3	210	60	14	14	10	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23599637--23599960	118	2.7	117	81	3	344	18	22	15	43	1.87
23600284--23600468	3	63.3	3	82	7	195	30	3	2	63	1.24
23600480--23600539	5	12.0	5	77	13	52	6	15	0	78	0.95
23600490--23600539	9	5.6	9	81	11	50	4	18	0	78	0.91
23601291--23601327	14	2.7	14	84	15	51	13	0	5	81	0.86
23601628--23601664	18	2.1	18	85	14	51	78	2	0	18	0.87
23615151--23615290	21	6.6	21	71	13	99	35	8	7	47	1.63
23615115--23615265	42	3.7	40	76	13	123	35	7	7	49	1.60
23615115--23615244	10	12.9	10	68	16	63	35	6	8	50	1.58
23615588--23615646	22	2.7	22	81	0	73	33	10	10	45	1.72
23615613--23615658	22	2.1	22	83	0	56	30	6	17	45	1.73
23615707--23615793	22	4.0	21	73	8	57	42	4	10	42	1.59
23615704--23615792	44	2.0	44	82	4	108	41	4	10	43	1.58
23615817--23615863	22	2.1	22	84	0	58	38	2	10	48	1.50
23615792--23615982	85	2.2	85	85	4	242	39	9	4	46	1.57
23615878--23615982	22	4.9	22	68	6	63	39	11	2	46	1.55
23615859--23615896	19	2.0	19	89	0	58	42	13	2	42	1.57
23616041--23616093	22	2.3	23	78	12	65	39	7	1	50	1.41
23616052--23616113	22	2.8	23	83	9	67	40	11	1	46	1.49
23616117--23616199	22	3.8	23	80	6	77	36	7	7	49	1.58
23616094--23616218	22	5.8	21	76	10	74	36	9	5	48	1.59
23616223--23616254	14	2.4	13	94	5	55	46	6	0	46	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23616265--23616347	22	3.8	21	77	6	76	33	4	9	51	1.56
23616485--23616519	11	3.2	11	83	0	52	37	2	5	54	1.39
23616487--23616540	22	2.5	21	82	8	56	38	7	5	48	1.55
23619963--23620050	25	3.6	24	64	20	56	37	9	4	48	1.55
23620323--23620359	2	18.5	2	94	0	65	51	45	0	2	1.15
23620359--23620395	2	18.5	2	100	0	74	51	0	0	48	1.00
23625665--23625695	15	2.1	15	93	0	53	16	0	6	77	0.97
23626287--23626333	22	2.2	22	81	11	53	25	6	6	61	1.44
23627710--23627735	10	2.6	10	100	0	52	34	0	0	65	0.93
23632813--23632956	72	2.0	72	93	0	243	45	8	17	28	1.77
23634888--23634954	5	13.0	5	72	20	50	4	16	4	74	1.14
23634971--23635000	14	2.1	15	93	6	53	3	6	0	90	0.56
23639033--23639070	13	2.8	14	88	8	60	13	5	0	81	0.85
23647380--23647423	23	1.9	23	86	9	63	13	6	0	79	0.92
23647380--23647416	16	2.3	17	81	13	51	13	8	0	78	0.96
23647847--23647884	16	2.4	16	95	0	67	34	13	10	42	1.78
23648004--23648042	20	2.0	20	89	0	60	28	23	15	33	1.95
23648313--23648441	22	5.8	22	76	8	127	34	16	9	39	1.80
23648674--23648705	11	3.1	11	82	17	50	40	9	18	31	1.83
23653924--23654043	62	1.9	62	83	6	154	25	11	8	54	1.64
23655181--23655218	16	2.4	16	86	4	51	15	2	2	78	0.97
23658823--23658885	31	2.0	31	90	6	101	30	3	25	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23658975--23659022	12	3.8	13	78	15	57	22	0	16	60	1.36
23661019--23661055	18	2.2	18	85	9	51	43	0	2	54	1.14
23661461--23661563	11	9.6	11	74	18	85	42	0	0	56	1.06
23661460--23661590	15	8.4	15	78	10	122	45	0	0	54	1.05
23661461--23661566	42	2.5	42	89	7	153	43	0	0	55	1.06
23661453--23661563	18	6.4	18	72	18	83	44	0	0	54	1.06
23665240--23665306	14	4.9	14	74	18	52	26	2	0	70	1.02
23665425--23665467	3	14.3	3	100	0	86	32	0	0	67	0.91
23665537--23665575	15	2.5	16	87	4	53	61	7	5	25	1.44
23669268--23669297	13	2.2	14	94	5	53	0	13	3	83	0.77
23669340--23669414	31	2.4	31	81	2	87	41	10	25	22	1.86
23669415--23669465	22	2.3	22	83	6	59	25	19	15	39	1.91
23669711--23669950	33	7.4	32	74	9	173	33	14	15	36	1.88
23669704--23669950	97	2.5	98	83	5	295	34	14	15	36	1.87
23669701--23669947	32	7.6	32	75	11	173	34	13	15	35	1.87
23670145--23670204	31	1.9	31	96	0	111	33	21	13	31	1.92
23670161--23670321	34	4.8	34	77	11	131	32	16	14	36	1.89
23671933--23671983	26	2.0	26	84	0	66	56	5	17	19	1.61
23672594--23672629	18	2.0	18	88	0	54	11	5	0	83	0.80
23679307--23679333	10	2.7	10	100	0	54	11	22	22	44	1.84
23680567--23680627	6	10.0	6	76	13	54	75	3	0	21	0.94
23680569--23680629	25	2.5	25	82	15	74	77	3	0	19	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23680570--23680613	19	2.5	17	79	13	52	75	2	0	22	0.92
23680568--23680625	17	3.6	14	80	19	53	75	3	0	20	0.94
23681019--23681057	19	2.1	19	85	0	51	58	20	5	15	1.55
23681573--23681609	17	2.2	16	90	9	56	10	8	5	75	1.17
23681599--23681642	7	6.0	7	82	10	52	15	18	11	54	1.70
23683321--23683405	36	2.4	36	74	5	84	30	12	24	31	1.93
23685260--23685321	10	5.7	10	75	16	52	3	19	0	77	0.90
23685273--23685349	26	3.0	25	80	17	70	3	23	0	72	1.01
23685284--23685349	26	2.3	30	85	10	86	4	25	0	69	1.07
23685274--23685350	14	5.9	12	73	25	52	3	23	0	72	1.01
23685801--23685863	11	5.1	11	74	23	54	4	12	1	80	0.93
23689077--23689104	11	2.5	11	100	0	56	32	0	0	67	0.91
23696078--23696130	26	2.0	26	96	0	97	56	18	5	18	1.61
23697610--23697650	20	2.0	21	85	4	57	56	21	12	9	1.65
23698435--23698461	14	1.9	14	100	0	54	37	0	0	62	0.95
23698437--23698500	19	3.3	20	83	14	82	39	0	0	60	0.97
23701790--23701827	14	2.8	14	84	4	51	28	0	15	55	1.41
23704995--23705391	198	2.0	198	90	1	618	23	12	14	49	1.77
23706135--23706180	20	2.2	21	84	7	67	45	0	0	54	0.99
23716821--23716895	32	2.3	34	77	11	84	29	1	5	64	1.24
23717519--23717552	18	1.9	18	88	5	52	47	0	8	44	1.34
23718875--23718923	24	2.0	24	100	0	98	55	4	20	20	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23729493--23729537	23	2.0	22	83	12	56	77	15	4	2	1.02
23731321--23731349	14	2.0	15	93	6	51	55	17	6	20	1.65
23733291--23733384	41	2.2	42	83	9	111	45	0	3	51	1.17
23733350--23733393	19	2.4	18	88	3	61	47	0	0	52	1.00
23740667--23740988	167	1.9	167	91	1	529	34	16	22	26	1.95
23745120--23745168	3	16.3	3	93	0	80	28	2	2	67	1.13
23757519--23757703	56	3.3	54	85	8	210	48	4	8	38	1.54
23757441--23757604	69	2.4	68	76	11	185	50	6	7	35	1.56
23757677--23757728	25	2.1	25	89	3	79	42	9	3	44	1.55
23761958--23761988	12	2.5	12	94	5	53	45	32	0	22	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195