genome.fa.s112.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  175  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29396894--29396919	2	13.0	2	100	0	52	0	0	50	50	1.00
29396919--29396947	2	14.5	2	100	0	58	48	0	51	0	1.00
29397236--29397323	43	2.0	43	88	0	131	32	15	9	42	1.79
29403014--29403038	11	2.3	11	100	0	50	32	0	0	68	0.90
29403832--29403880	22	2.2	23	85	3	64	51	0	2	46	1.12
29403875--29403915	20	1.9	20	85	14	55	56	0	7	36	1.27
29408230--29408267	20	1.9	20	88	0	58	15	36	18	28	1.92
29411751--29411783	6	5.7	6	92	3	50	87	3	0	9	0.63
29415490--29415532	21	2.0	22	86	8	63	20	4	4	69	1.25
29415735--29415798	15	4.2	16	69	25	50	32	9	0	57	1.30
29421795--29421864	24	2.8	25	80	8	72	55	0	8	35	1.30
29422277--29422329	21	2.5	21	81	6	54	49	3	1	45	1.31
29431688--29431766	36	2.2	36	86	0	104	35	11	15	37	1.83
29434713--29434754	20	2.1	20	86	0	57	40	7	16	35	1.76
29434772--29435504	322	2.2	328	80	7	801	38	10	14	36	1.80
29439723--29439761	18	2.1	18	90	9	60	51	2	0	46	1.14
29456083--29456108	3	8.7	3	100	0	52	69	0	0	30	0.89
29456264--29456310	24	1.9	25	86	4	69	55	6	6	31	1.51
29466349--29466383	6	5.8	6	86	0	52	37	17	34	11	1.85
29469722--29469772	8	6.4	8	73	8	50	64	0	1	33	1.05
29481382--29481423	22	1.9	22	85	9	59	45	16	7	30	1.74
29493330--29493362	15	2.2	15	89	10	50	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29497301--29497433	4	33.2	4	75	6	65	18	3	10	67	1.33
29499406--29499476	9	8.2	9	71	18	53	50	1	0	47	1.09
29499406--29499471	26	2.6	25	88	7	105	51	1	0	46	1.10
29499414--29499479	15	4.5	15	71	24	52	51	1	0	46	1.10
29499440--29499479	15	2.6	16	84	4	55	52	2	0	45	1.14
29499497--29499536	19	2.1	19	85	0	53	62	0	5	32	1.17
29499556--29499785	3	78.7	3	68	21	53	39	0	0	59	1.10
29499587--29499794	18	12.2	18	75	18	153	41	0	0	57	1.09
29499567--29499782	34	6.3	33	78	13	206	40	0	0	58	1.08
29499571--29499775	88	2.4	88	83	11	252	40	0	0	58	1.08
29499568--29499776	13	17.3	13	73	20	136	40	0	0	58	1.08
29499905--29499965	19	3.2	19	75	13	63	42	4	0	52	1.23
29499905--29499951	23	2.0	23	91	0	76	38	4	0	57	1.18
29515326--29515365	13	2.8	14	88	11	55	65	2	2	30	1.19
29526407--29526452	11	4.4	11	81	10	51	56	0	2	41	1.11
29526409--29526453	20	2.2	20	80	7	56	55	0	2	42	1.12
29526425--29526468	18	2.3	20	85	14	58	63	0	0	36	0.95
29526895--29526940	24	1.9	24	90	0	74	47	0	8	43	1.34
29527402--29527448	2	24.0	2	91	4	78	48	0	0	51	1.00
29527664--29527777	37	3.1	37	67	14	92	50	5	1	42	1.35
29528268--29528463	107	1.8	106	83	3	259	40	11	10	37	1.76
29528455--29528481	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29529229--29529285	29	2.0	29	89	0	87	26	19	15	38	1.92
29531600--29531737	71	1.9	71	89	2	215	35	16	2	44	1.63
29532924--29532989	6	11.3	6	81	10	57	71	3	0	25	1.01
29532924--29532989	29	2.5	25	78	11	71	71	3	0	25	1.01
29532924--29532989	25	2.8	24	71	11	64	71	3	0	25	1.01
29533944--29533979	3	12.0	3	100	0	72	66	0	0	33	0.92
29533974--29534182	115	1.8	115	93	2	366	42	20	14	22	1.88
29534480--29534582	18	5.7	18	66	22	56	40	13	11	33	1.81
29534574--29534648	34	2.2	32	81	9	87	40	10	13	36	1.79
29539063--29539098	17	2.0	18	89	10	56	38	2	0	58	1.13
29539063--29539099	18	2.0	19	89	5	58	40	2	0	56	1.13
29539757--29539837	34	2.4	34	77	10	85	38	3	6	51	1.45
29542901--29542942	22	1.9	22	85	9	59	52	0	0	47	1.00
29543391--29543458	27	2.5	26	78	19	68	64	1	1	32	1.11
29544540--29544578	18	2.2	18	85	0	51	46	0	2	51	1.14
29546740--29546786	25	2.0	24	87	8	69	19	14	6	59	1.56
29551266--29551310	23	2.0	23	100	0	90	40	13	11	35	1.80
29557003--29557038	9	3.9	9	85	7	54	33	16	36	13	1.89
29557003--29557038	19	1.9	18	94	5	63	33	16	36	13	1.89
29557256--29557300	19	2.5	17	79	10	54	46	0	2	51	1.13
29557391--29557437	21	2.4	21	86	10	64	36	0	0	63	0.94
29557820--29557859	21	2.0	20	85	5	53	55	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29557930--29557967	2	19.0	2	88	0	58	50	0	2	47	1.15
29561163--29561445	58	4.5	61	75	17	244	49	4	8	37	1.54
29561289--29561321	15	2.3	15	94	5	59	63	6	0	30	1.18
29567044--29567282	56	4.2	56	82	6	250	48	6	7	37	1.57
29567044--29567282	113	2.1	115	84	7	312	48	6	7	37	1.57
29569340--29569393	27	2.0	27	96	0	99	37	16	3	42	1.66
29608450--29608523	28	2.6	27	79	12	78	59	8	1	31	1.35
29608545--29608589	18	2.4	20	85	10	60	66	4	0	28	1.11
29608555--29608665	10	11.5	10	66	24	51	61	5	0	32	1.25
29608579--29608661	20	4.2	19	74	18	71	59	4	1	34	1.27
29608734--29608903	9	17.3	10	70	18	108	58	11	1	28	1.42
29608734--29608894	19	8.3	19	75	14	96	58	11	1	27	1.44
29608734--29608895	20	8.3	19	75	15	125	58	11	1	27	1.43
29608734--29608924	9	19.9	9	70	17	84	57	9	2	30	1.43
29608734--29608983	19	12.9	19	68	20	76	56	8	2	32	1.43
29609009--29609034	13	2.0	13	100	0	52	30	0	0	69	0.89
29609297--29609357	20	3.1	20	88	4	88	34	0	8	57	1.29
29609253--29609348	29	3.2	29	77	11	81	37	0	7	55	1.28
29609306--29609361	19	2.9	19	89	2	76	39	0	7	53	1.28
29609365--29609415	20	2.6	20	84	9	61	45	0	7	47	1.32
29609484--29609615	20	6.8	19	68	16	65	34	1	7	56	1.37
29609537--29609578	21	2.1	21	86	8	61	26	0	7	66	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29609556--29609609	17	3.0	18	81	10	58	38	0	5	55	1.23
29609566--29609625	27	2.2	27	87	3	84	41	0	1	56	1.09
29609567--29609624	10	6.5	8	76	20	53	43	0	1	55	1.10
29611919--29611953	18	1.9	18	94	0	61	25	5	8	60	1.49
29616375--29616416	16	2.9	15	82	10	52	50	0	0	50	1.00
29617087--29617224	22	6.2	22	68	13	77	51	6	6	35	1.54
29616976--29617257	89	3.2	87	75	7	257	48	5	8	37	1.58
29617326--29617386	22	2.8	22	78	9	70	52	8	9	29	1.63
29617466--29617631	22	7.5	22	75	5	127	46	9	6	36	1.63
29617493--29617651	66	2.4	66	77	5	160	47	10	7	35	1.66
29617536--29617660	45	2.8	45	78	4	121	44	9	8	36	1.68
29617502--29617696	22	8.8	22	76	4	88	44	8	9	37	1.66
29617502--29617711	111	1.9	111	79	5	237	44	8	9	37	1.68
29617699--29617741	22	2.0	22	85	0	59	48	9	6	34	1.62
29617999--29618074	39	1.9	39	84	10	102	51	6	5	36	1.51
29618019--29618112	21	4.7	20	70	18	61	47	7	7	37	1.60
29618590--29618622	17	1.9	17	93	0	57	66	0	6	27	1.15
29618618--29618705	25	3.4	25	70	20	72	55	1	2	40	1.20
29618613--29618705	26	3.6	25	71	17	73	55	1	2	40	1.19
29618688--29618721	14	2.4	14	95	0	59	44	0	2	52	1.16
29618618--29618707	27	3.5	25	70	20	69	55	1	2	41	1.19
29619053--29619137	41	2.1	41	97	0	161	42	21	15	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29620014--29620043	2	15.0	2	100	0	60	50	0	0	50	1.00
29629371--29629420	10	5.2	10	80	9	59	78	0	22	0	0.76
29629388--29629424	10	3.5	10	89	10	56	86	0	13	0	0.57
29629600--29629782	49	3.8	48	84	4	226	36	22	14	26	1.93
29629600--29629805	49	4.2	49	79	9	217	35	22	13	28	1.92
29641351--29641376	10	2.6	10	100	0	52	53	0	0	46	1.00
29641819--29642326	200	2.5	200	83	5	672	37	11	6	43	1.68
29643388--29643428	12	3.4	12	86	0	55	85	0	14	0	0.60
29650841--29650911	34	2.1	34	86	0	97	38	14	9	38	1.79
29652918--29652968	26	2.0	26	84	0	66	47	9	5	37	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195