genome.fa.s112.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  63  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12589926--12589999	13	5.5	13	75	4	67	21	0	33	44	1.53
12589926--12589999	7	11.0	7	75	8	55	21	0	33	44	1.53
12589926--12589998	20	3.7	20	76	7	67	21	0	32	45	1.53
12591012--12591067	25	2.2	25	81	6	69	5	28	0	66	1.14
12592070--12592119	20	2.5	20	83	0	73	24	10	14	52	1.71
12598953--12599034	34	2.5	32	88	6	110	50	2	0	47	1.14
12599048--12599089	15	2.9	14	80	13	50	59	0	2	38	1.10
12598984--12599101	25	4.6	25	65	24	66	47	0	2	49	1.21
12600535--12600581	19	2.7	17	87	9	60	42	4	2	51	1.33
12600604--12600632	11	2.7	11	94	5	51	44	0	0	55	0.99
12606956--12606991	2	18.0	2	88	0	54	44	0	2	52	1.15
12606976--12607085	56	2.0	56	87	0	157	25	14	10	49	1.76
12617507--12617566	29	2.0	30	96	3	113	20	16	20	43	1.88
12625381--12625420	3	13.3	3	100	0	80	32	0	0	67	0.91
12625871--12626206	172	2.0	172	92	0	555	40	19	14	25	1.89
12626214--12626281	32	2.1	32	83	5	84	51	23	10	14	1.73
12626341--12626478	30	4.5	32	76	13	112	54	21	12	12	1.70
12626368--12626482	30	3.8	30	82	7	128	53	23	13	10	1.70
12626431--12626526	30	3.2	30	79	2	86	46	22	16	13	1.82
12627853--12628410	145	3.9	144	80	5	502	41	14	13	30	1.84
12628990--12629337	107	3.3	103	79	7	335	35	13	17	33	1.89
12628932--12629339	104	3.9	105	79	8	359	36	13	17	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12629299--12629385	22	4.0	22	80	5	104	27	16	26	29	1.96
12629299--12629385	44	2.0	44	86	4	122	27	16	26	29	1.96
12630030--12630297	91	2.9	88	83	5	248	32	12	19	35	1.90
12630159--12630390	41	5.4	40	69	21	134	31	12	20	34	1.90
12630130--12630297	53	3.4	52	68	22	119	31	12	19	36	1.89
12630121--12630309	94	2.0	91	83	6	227	33	12	19	34	1.89
12630325--12630404	41	2.0	41	87	0	115	32	13	18	35	1.90
12631749--12631811	11	5.5	11	73	16	56	3	17	0	79	0.86
12641403--12641452	26	1.9	26	83	0	64	62	10	4	24	1.44
12642783--12642817	3	11.3	3	87	6	52	31	0	0	68	0.90
12642906--12642988	3	27.7	3	97	0	157	33	0	1	65	1.01
12643544--12643771	32	7.3	32	70	7	94	50	21	12	16	1.78
12643648--12643775	57	2.2	58	81	4	152	51	21	13	14	1.75
12643722--12643898	30	5.8	30	79	2	165	52	27	12	7	1.66
12645225--12645780	144	3.9	144	73	6	462	38	12	15	32	1.85
12649848--12649882	16	2.2	16	94	0	61	31	14	11	42	1.81
12660930--12660963	17	1.9	18	88	5	52	32	0	8	58	1.29
12662684--12662774	13	7.5	13	70	17	52	39	36	1	23	1.62
12662653--12662774	7	18.4	7	71	13	62	43	36	0	19	1.57
12662681--12662773	20	4.8	19	71	16	57	40	35	1	22	1.61
12663322--12663350	10	2.9	10	100	0	58	79	0	10	10	0.94
12663205--12663347	67	2.1	67	78	8	157	52	2	11	34	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12664016--12664175	25	6.3	26	84	3	202	25	11	9	53	1.67
12664945--12664988	15	3.0	15	87	9	56	79	6	6	6	1.06
12664952--12664988	15	2.3	16	90	9	58	78	5	8	8	1.09
12665194--12665378	37	5.4	36	68	18	115	32	20	9	37	1.84
12665183--12665325	63	2.3	63	97	0	268	30	20	9	39	1.85
12665277--12665410	72	1.9	72	83	0	178	35	21	7	35	1.82
12666059--12666127	32	2.2	32	86	2	95	34	8	23	33	1.85
12670418--12670459	21	2.0	21	81	9	50	30	2	21	45	1.65
12671308--12671407	30	3.4	30	76	13	116	25	14	17	44	1.85
12671275--12671407	59	2.2	59	89	2	194	25	13	17	43	1.85
12671978--12672104	46	2.7	46	86	4	157	27	16	13	42	1.85
12671926--12672156	48	4.8	47	78	7	205	28	12	12	45	1.80
12672089--12672211	47	2.6	46	79	5	129	30	11	15	43	1.82
12674082--12674163	40	2.0	40	97	0	155	31	9	17	41	1.82
12674697--12674746	15	3.8	13	81	10	57	50	28	2	20	1.59
12674778--12674828	13	4.1	12	82	9	66	43	35	0	21	1.53
12674711--12674840	6	20.7	6	67	17	50	43	30	2	23	1.66
12675232--12675375	69	2.1	66	84	7	182	50	1	9	38	1.44
12676224--12676572	175	2.0	176	93	0	601	32	24	12	30	1.92
12676435--12676836	206	1.9	207	86	0	572	24	30	11	33	1.91
12678526--12678598	20	3.7	20	74	3	67	38	15	15	31	1.88
12678766--12679101	143	2.3	143	79	6	392	30	13	12	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12680643--12680851	20	10.3	20	70	4	123	43	36	2	16	1.63
12680824--12680884	13	4.6	13	78	11	54	45	37	0	16	1.47
12680804--12680897	33	2.8	33	80	6	102	44	38	1	15	1.54
12680863--12680916	13	4.2	13	76	4	56	42	38	0	18	1.50
12680866--12680922	26	2.2	26	90	0	87	45	35	0	19	1.50
12680929--12680993	20	3.4	20	81	6	64	41	46	4	7	1.53
12680998--12681050	6	8.8	6	77	8	54	39	41	3	15	1.65
12680989--12681043	24	2.3	24	93	0	101	40	40	7	12	1.71
12681040--12681086	12	4.0	12	80	2	51	53	38	0	8	1.32
12681145--12681209	12	5.2	12	71	23	53	49	38	0	12	1.41
12681168--12681235	31	2.2	31	84	5	84	47	38	0	14	1.45
12681152--12681209	20	3.0	20	76	21	68	46	39	0	13	1.44
12681145--12681247	19	5.8	18	71	19	74	47	37	0	14	1.45
12682978--12683030	25	2.1	25	92	0	88	50	3	3	41	1.38
12683321--12683360	17	2.3	16	87	12	53	77	0	12	10	0.99
12691887--12691936	16	3.1	16	79	20	52	82	0	12	6	0.85
12693041--12693462	35	12.1	35	74	6	241	18	18	12	50	1.77
12693038--12693307	139	1.9	140	80	5	314	18	18	11	50	1.77
12693051--12693462	105	3.9	105	78	7	372	18	18	12	50	1.77
12693371--12693403	16	2.0	17	88	5	50	21	9	6	63	1.45
12693414--12693517	54	1.9	54	82	3	129	20	16	10	52	1.72
12693383--12693552	89	1.9	88	85	5	236	20	16	10	53	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12693471--12693743	35	7.8	35	78	3	203	20	14	13	52	1.75
12693882--12694014	6	22.8	6	70	15	57	80	10	2	6	0.98
12693900--12694019	20	5.6	21	72	7	82	80	10	2	7	1.00
12693900--12694004	39	2.6	39	80	7	113	80	10	0	8	0.97
12693928--12694012	45	1.9	44	86	11	120	78	11	1	8	1.01
12693883--12694025	20	7.1	20	72	5	81	81	9	3	6	0.98
12694503--12694993	145	3.4	141	75	10	445	33	14	12	39	1.84
12698751--12698791	15	2.7	15	79	20	50	24	0	2	73	0.96
12698933--12698983	3	16.3	3	76	15	50	68	5	0	25	1.12
12699361--12699509	29	5.2	28	75	7	138	49	30	2	16	1.60
12699361--12699538	57	3.1	56	81	8	171	49	30	2	17	1.59
12699381--12699538	30	5.4	28	77	11	122	48	31	2	17	1.61
12699603--12699661	24	2.5	24	76	15	61	52	27	0	20	1.47
12699650--12699707	14	4.0	14	75	6	62	55	22	0	22	1.44
12700840--12700889	26	2.0	25	88	4	73	26	4	4	66	1.27
12701489--12701535	11	4.2	11	81	10	51	78	4	14	2	0.99
12701495--12701543	9	5.0	10	78	16	50	79	4	16	0	0.88
12704533--12704593	28	2.2	28	88	5	88	83	1	11	3	0.83
12704533--12704582	18	3.1	16	78	13	57	84	2	10	4	0.84
12705444--12705518	32	2.4	31	80	12	89	30	17	18	33	1.94
12705534--12705634	32	3.2	32	78	2	114	35	17	17	28	1.93
12706009--12706275	33	8.3	33	67	14	110	30	19	14	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12705985--12706255	62	4.2	66	73	11	224	30	20	14	34	1.93
12706014--12706255	62	3.8	62	76	7	245	30	19	14	34	1.92
12705985--12706256	129	2.1	128	86	3	368	30	20	14	34	1.93
12706205--12706320	33	3.5	33	79	9	121	31	20	12	34	1.91
12706402--12706510	37	2.9	37	70	0	92	14	17	16	51	1.77
12706693--12706750	15	3.9	15	77	16	50	63	0	0	36	0.94
12708056--12708097	14	3.2	14	80	12	54	71	9	0	19	1.13
12708046--12708097	26	2.0	25	85	10	70	71	7	0	21	1.11
12708470--12708695	30	7.6	30	72	8	147	46	28	4	19	1.69
12708477--12708533	16	3.7	15	74	9	53	49	29	1	19	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195