genome.fa.s112.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  86  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16176074--16176126	26	2.0	26	96	0	97	28	26	18	26	1.98
16174292--16176627	906	2.6	893	87	3	3192	26	23	23	25	2.00
16176730--16176781	26	2.0	26	88	3	79	26	25	21	26	1.99
16178510--16178565	26	2.2	26	83	6	69	28	19	17	33	1.95
16176712--16178909	898	2.5	891	86	4	2993	24	24	24	25	2.00
16179327--16179379	26	2.0	26	88	0	79	28	22	20	28	1.99
16181069--16181121	26	2.0	26	96	0	97	22	24	20	32	1.98
16181959--16182009	26	2.0	26	100	0	102	29	27	15	27	1.96
16179389--16185018	901	6.4	878	84	6	6433	25	24	24	25	2.00
16186813--16186863	26	2.0	26	96	0	93	29	29	13	27	1.94
16189432--16189489	26	2.2	26	96	3	107	27	25	20	25	1.99
16190342--16190413	26	2.8	26	89	0	117	31	25	15	27	1.95
16191074--16195393	891	4.9	873	84	6	5108	25	25	23	25	2.00
16193742--16193792	26	2.0	26	100	0	102	29	27	15	27	1.96
16195367--16195419	26	2.0	26	96	0	97	28	26	18	26	1.98
16195500--16195524	11	2.3	11	100	0	50	20	36	32	12	1.89
16196077--16196102	12	2.2	12	100	0	52	0	65	26	7	1.20
16194782--16196809	724	2.8	731	85	4	2723	27	23	22	26	2.00
16196995--16197047	26	2.0	26	96	0	97	28	22	18	30	1.98
16197899--16197951	26	2.0	26	85	7	72	24	24	20	30	1.99
16196131--16198678	896	2.8	889	86	4	3218	26	24	23	26	2.00
16199347--16199399	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16199791--16199842	26	2.0	26	96	0	95	32	26	13	26	1.94
16200393--16201676	651	2.0	633	83	5	1621	20	27	25	26	1.99
16203035--16203090	26	2.2	26	86	0	76	30	23	17	28	1.97
16203667--16203719	26	2.0	26	88	0	79	26	24	18	30	1.98
16202541--16203739	629	1.9	629	86	1	1713	27	24	22	25	2.00
16203693--16207770	876	4.6	872	83	6	4946	25	24	23	25	2.00
16207012--16207037	4	6.5	4	100	0	52	0	73	26	0	0.84
16211476--16211528	26	2.0	26	100	0	106	26	26	20	26	1.99
16207810--16214439	900	7.4	899	85	5	8302	25	25	24	25	2.00
16214196--16214248	26	2.0	26	88	0	79	28	22	20	28	1.99
16214440--16214492	26	2.0	26	92	0	88	30	26	18	24	1.98
16215345--16215397	26	2.0	26	96	0	97	28	26	20	24	1.99
16217109--16217159	26	2.0	26	92	0	84	25	23	19	31	1.98
16218006--16218058	26	2.0	26	92	0	88	26	26	20	26	1.99
16216178--16218166	897	2.2	902	86	2	2813	25	24	24	25	2.00
16219315--16219367	26	2.0	26	92	0	88	26	22	22	28	1.99
16221366--16221418	26	2.0	26	92	0	88	28	28	18	24	1.98
16222258--16222308	26	2.0	26	88	0	75	31	27	13	27	1.94
16223142--16223194	26	2.0	26	96	0	97	26	24	20	28	1.99
16224018--16224070	26	2.0	26	96	0	97	28	26	18	26	1.98
16220731--16225280	876	5.1	879	83	7	4985	26	25	23	25	2.00
16226149--16226199	26	2.0	26	96	0	93	27	27	17	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16226175--16227652	717	2.1	707	88	3	2187	26	24	24	25	2.00
16228680--16228730	26	2.0	26	92	0	84	31	23	15	29	1.95
16226882--16229465	920	2.8	900	84	4	3445	26	24	24	24	2.00
16228704--16230179	712	2.1	714	87	1	2131	26	23	23	25	2.00
16229407--16234721	859	6.0	872	82	7	6039	25	24	24	25	2.00
16232062--16232140	26	3.0	26	96	0	149	26	25	20	27	1.99
16231192--16232982	921	1.9	918	88	3	2697	25	25	23	26	2.00
16234695--16234747	26	2.0	26	92	0	88	28	28	16	26	1.97
16235965--16236015	26	2.0	26	96	0	93	27	19	19	33	1.96
16236865--16236917	26	2.0	26	92	0	88	28	24	18	28	1.98
16235216--16238622	896	3.8	899	86	2	4705	26	25	23	24	2.00
16238764--16238816	26	2.0	26	100	0	106	26	26	20	26	1.99
16239503--16239555	26	2.0	26	96	0	97	28	26	18	26	1.98
16238732--16240262	737	2.1	735	90	1	2408	27	24	22	25	2.00
16241271--16241321	26	2.0	26	92	0	84	29	27	15	27	1.96
16242811--16242863	26	2.0	26	92	0	88	26	26	20	26	1.99
16242781--16244990	898	2.5	895	85	4	2972	24	24	24	25	2.00
16244400--16245615	624	1.9	624	85	2	1668	22	25	27	24	2.00
16246911--16246963	26	2.0	26	89	7	81	30	24	16	28	1.97
16247806--16247858	26	2.0	26	96	0	97	32	26	15	26	1.95
16248710--16248760	26	2.0	26	92	0	84	31	29	11	27	1.92
16249125--16249426	150	2.0	150	99	0	595	41	21	15	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16249275--16253735	899	5.0	873	82	7	4883	25	24	23	25	2.00
16251496--16251548	26	2.0	26	92	0	88	28	28	16	26	1.97
16254845--16254895	26	2.0	26	96	0	93	29	29	13	27	1.94
16256623--16260052	899	3.9	895	86	3	4491	25	24	24	25	2.00
16259258--16260764	712	2.1	713	88	2	2224	26	24	23	26	2.00
16260844--16262352	712	2.1	714	87	3	2171	26	23	23	26	2.00
16265072--16265121	26	1.9	26	91	0	82	22	26	20	32	1.98
16265798--16265850	26	2.0	26	100	0	106	26	26	20	26	1.99
16266697--16266726	9	3.4	9	90	9	53	10	23	66	0	1.21
16265252--16267218	735	2.7	724	86	4	2624	28	23	22	26	1.99
16267420--16267472	26	2.0	26	92	7	90	26	22	20	30	1.98
16268307--16268359	26	2.0	26	96	0	97	24	26	22	26	2.00
16266727--16269086	880	2.7	889	85	5	3145	27	24	22	26	2.00
16269757--16269809	26	2.0	26	92	0	88	28	22	20	28	1.99
16270201--16270252	26	2.0	26	92	0	86	30	26	15	26	1.96
16269721--16270581	455	1.9	444	85	4	1161	22	24	24	28	1.99
16272316--16272347	12	2.7	12	100	0	64	0	59	25	15	1.36
16271400--16273398	864	2.3	863	85	2	2619	24	25	24	25	2.00
16273376--16273431	26	2.2	26	90	0	85	28	23	19	28	1.98
16274008--16274060	26	2.0	26	88	0	79	26	24	18	30	1.98
16272882--16274097	629	1.9	629	86	2	1733	27	25	22	24	2.00
16278437--16278489	26	2.0	26	85	7	72	28	26	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16279438--16279470	11	3.0	11	90	0	57	18	33	36	12	1.88
16279791--16279847	26	2.2	26	81	6	62	61	12	7	19	1.53
16280204--16280259	25	2.3	25	93	3	96	32	23	17	26	1.97
16279331--16293403	886	15.5	885	76	11	9764	25	24	24	25	2.00
16281986--16282038	26	2.0	26	96	0	97	24	26	22	26	2.00
16282889--16282941	26	2.0	26	96	0	97	26	24	20	28	1.99
16285782--16285834	26	2.0	26	92	0	88	30	26	18	24	1.98
16286675--16286727	26	2.0	26	96	0	97	28	26	20	24	1.99
16287579--16287631	26	2.0	26	96	0	97	26	24	20	28	1.99
16289359--16289411	26	2.0	26	96	0	97	28	26	16	28	1.97
16289820--16289876	26	2.3	25	84	6	71	52	17	7	22	1.68
16285782--16293404	900	8.5	899	87	3	9710	25	24	23	25	2.00
16292328--16292373	23	2.0	23	100	0	92	34	43	4	17	1.69
16292907--16292964	26	2.2	26	96	3	107	27	25	20	25	1.99
16293592--16293644	26	2.0	26	88	0	79	30	26	15	28	1.96
16294610--16304128	903	10.7	902	83	5	11213	25	24	24	25	2.00
16297599--16297657	26	2.3	26	82	5	66	61	11	6	20	1.53
16298023--16298075	26	2.0	26	96	0	97	26	24	20	28	1.99
16298921--16298973	26	2.0	26	96	0	97	26	26	18	28	1.98
16299801--16299851	26	2.0	26	100	0	102	27	29	15	27	1.96
16302505--16302557	26	2.0	26	88	0	79	28	24	16	30	1.97
16293406--16304128	903	12.1	878	82	7	10573	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16304102--16304154	26	2.0	26	96	0	97	28	24	20	26	1.99
16304997--16305049	26	2.0	26	89	7	81	28	26	18	26	1.98
16304084--16308630	903	5.1	891	85	4	5912	26	24	24	25	2.00
16307672--16307724	26	2.0	26	92	0	88	30	22	16	30	1.96
16308567--16308619	26	2.0	26	92	0	88	26	22	20	30	1.98
16310121--16310173	26	2.0	26	100	0	106	26	26	20	26	1.99
16311024--16311074	26	2.0	26	96	0	93	27	27	17	27	1.98
16309256--16315492	898	7.0	897	85	4	7655	25	24	23	25	2.00
16313725--16313777	26	2.0	26	96	0	97	28	26	18	26	1.98
16315537--16317035	711	2.1	714	89	2	2269	26	24	23	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195