genome.fa.s112.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  14  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3193338--3193401	9	7.1	9	77	13	69	26	0	0	73	0.84
3193338--3193474	4	33.0	4	65	19	50	25	1	2	70	1.10
3193358--3193412	26	2.2	25	83	9	67	21	1	1	74	1.01
3193432--3193475	17	2.5	17	88	3	61	34	0	0	65	0.93
3195020--3195052	3	11.0	3	100	0	66	33	0	0	66	0.92
3199805--3199848	20	2.3	19	84	4	52	56	0	2	40	1.11
3202263--3202328	16	4.1	16	72	5	53	60	0	0	39	0.97
3203390--3203427	3	12.3	3	94	5	67	65	0	0	34	0.93
3205174--3205209	16	2.2	16	90	0	54	44	2	0	52	1.15
3205262--3205363	30	3.5	28	74	10	87	51	0	5	41	1.32
3205315--3205372	29	2.0	29	83	6	73	55	0	3	41	1.17
3205397--3205427	3	10.3	3	100	0	62	64	0	0	35	0.94
3217064--3217102	12	3.2	12	85	3	51	61	2	0	35	1.10
3217323--3217348	13	2.0	13	100	0	52	30	0	0	69	0.89
3217738--3217888	81	1.9	81	94	0	266	26	16	24	32	1.96
3218629--3218654	2	13.0	2	100	0	52	50	0	0	50	1.00
3220409--3220596	98	1.9	98	97	0	358	42	5	6	46	1.52
3239870--3239896	2	13.5	2	100	0	54	51	48	0	0	1.00
3249537--3249582	19	2.4	19	88	0	74	26	23	6	43	1.78
3253726--3253769	22	2.0	22	86	8	63	34	22	4	38	1.75
3267268--3267417	78	1.9	77	81	6	178	16	20	18	45	1.86
3270458--3270494	19	2.1	18	85	14	51	43	10	24	21	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3274792--3274867	12	6.1	12	76	21	59	31	1	0	67	0.99
3274854--3274897	23	1.9	23	81	9	54	45	0	0	54	0.99
3275075--3275109	18	2.0	18	88	5	54	17	2	0	80	0.84
3275286--3275325	8	5.0	8	93	0	62	37	0	0	62	0.95
3275292--3275329	17	2.3	16	90	4	58	42	0	0	57	0.98
3275295--3275329	8	4.4	8	96	0	52	40	0	0	60	0.97
3276989--3277064	38	2.0	38	97	0	143	27	26	22	23	1.99
3282199--3282233	14	2.5	14	90	0	52	34	8	11	45	1.71
3283667--3283733	22	3.1	22	73	14	68	43	0	0	56	0.99
3283691--3283746	29	2.0	28	82	10	69	39	3	0	57	1.16
3285099--3285136	2	19.0	2	100	0	76	0	50	0	50	1.00
3294761--3294875	56	2.1	56	98	0	221	46	15	8	28	1.75
3296484--3296511	12	2.3	12	100	0	56	14	35	7	42	1.73
3298043--3298079	2	18.5	2	88	0	56	48	2	0	48	1.15
3302180--3302242	20	3.2	20	73	8	56	49	1	7	41	1.42
3307003--3307029	12	2.2	12	100	0	54	25	7	22	44	1.79
3310758--3310794	18	2.1	18	89	0	56	21	24	13	40	1.89
3314776--3314819	20	2.1	21	83	8	54	47	0	0	52	1.00
3315223--3315292	29	2.4	29	75	18	72	60	1	0	38	1.06
3315239--3315292	27	1.9	29	85	7	76	61	0	0	38	0.96
3316470--3316497	2	14.0	2	100	0	56	50	0	0	50	1.00
3320083--3320125	10	4.5	10	81	18	56	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3320083--3320125	20	2.3	19	92	8	70	32	0	0	67	0.91
3341711--3341780	34	2.0	35	86	2	97	30	14	15	40	1.87
3342824--3342868	19	2.3	19	85	11	56	44	4	11	40	1.60
3342871--3342939	33	2.2	31	82	10	77	47	2	0	49	1.16
3349968--3350027	31	2.0	30	83	9	77	41	6	6	45	1.57
3354113--3354153	14	2.9	14	82	10	57	48	4	0	46	1.23
3355232--3355582	174	2.0	174	98	0	684	37	14	13	34	1.85
3361455--3361479	2	12.5	2	100	0	50	0	0	48	52	1.00
3371016--3371644	314	2.0	314	97	1	1181	31	18	17	33	1.94
3372993--3373126	34	4.0	33	70	17	96	47	0	0	51	1.11
3373067--3373134	31	2.2	31	89	2	102	38	1	1	58	1.16
3373085--3373139	26	2.0	28	89	6	87	40	0	1	58	1.09
3378348--3378419	23	3.1	23	84	4	74	48	9	9	31	1.69
3378381--3378430	23	2.1	24	85	7	66	48	12	6	34	1.65
3381676--3381701	8	3.2	8	100	0	52	88	0	0	11	0.52
3381832--3382148	44	7.1	43	78	6	208	40	13	14	31	1.84
3381832--3382087	132	1.9	132	80	6	295	41	12	15	31	1.84
3382068--3382678	49	12.7	48	81	6	592	37	18	13	30	1.89
3382071--3382679	143	4.2	144	84	6	696	38	18	13	30	1.89
3383501--3383543	22	2.0	22	86	9	61	2	11	6	79	1.02
3387409--3387461	25	2.1	26	96	3	99	50	20	9	18	1.74
3389634--3389686	3	18.3	3	80	7	65	32	3	1	62	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3389634--3389686	20	2.6	20	87	3	70	32	3	1	62	1.24
3390119--3390167	10	4.8	10	85	5	71	12	0	18	69	1.19
3390119--3390167	21	2.4	20	83	6	71	12	0	18	69	1.19
3401754--3402078	118	2.7	119	78	3	325	22	19	12	46	1.83
3401694--3402136	119	3.7	116	76	8	381	21	18	11	47	1.81
3402418--3402474	26	2.2	26	87	6	80	17	35	17	29	1.93
3402628--3402721	3	33.3	3	79	10	101	29	4	1	64	1.19
3402615--3402716	38	2.8	38	84	8	115	31	3	2	61	1.29
3402651--3402729	6	14.4	5	79	12	52	27	2	0	69	1.01
3408050--3408079	15	1.9	16	93	6	53	6	3	10	80	1.01
3408526--3408556	15	2.1	14	94	5	53	9	0	12	77	0.99
3408520--3408572	20	2.5	21	81	9	63	9	1	15	73	1.17
3412675--3412705	14	2.3	14	94	5	55	83	9	0	6	0.79
3412673--3412719	21	2.2	21	92	7	78	80	12	0	6	0.88
3412674--3412712	14	2.7	14	84	4	51	84	7	0	7	0.77
3420550--3420967	48	8.7	48	87	5	555	29	10	25	34	1.90
3420541--3420967	145	3.0	145	88	4	616	30	10	24	33	1.89
3421134--3421184	5	10.0	5	78	19	52	80	13	3	1	0.94
3421142--3421200	16	3.7	16	84	8	84	79	11	5	3	1.01
3421137--3421184	21	2.3	20	86	10	62	81	12	4	2	0.93
3421134--3421203	32	2.2	31	85	9	97	80	12	4	2	0.98
3433159--3433514	119	3.0	118	77	6	387	22	20	11	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3433159--3433498	118	2.9	119	78	6	357	22	21	11	44	1.84
3433131--3433573	119	3.7	116	75	9	367	21	18	11	47	1.80
3433855--3433911	26	2.2	26	87	6	80	17	35	17	29	1.93
3434059--3434126	3	23.0	3	84	3	93	33	4	1	60	1.26
3434992--3435023	13	2.5	13	89	0	55	6	15	0	78	0.95
3439729--3439759	15	2.1	14	94	5	53	9	0	12	77	0.99
3439723--3439775	20	2.5	21	81	9	63	9	1	15	73	1.17
3440534--3440571	17	2.2	17	90	0	58	18	2	0	78	0.86
3443120--3443152	13	2.4	14	85	10	50	75	3	0	21	0.93
3443128--3443159	13	2.5	13	95	5	57	78	6	0	15	0.95
3443924--3443954	14	2.3	14	94	5	55	87	6	0	6	0.68
3444380--3444435	28	2.0	28	96	0	103	44	7	23	25	1.78
3455148--3455500	47	7.7	47	81	6	334	28	12	19	39	1.88
3455149--3455409	92	2.8	94	88	1	364	28	13	19	39	1.89
3455170--3455451	139	2.0	137	82	6	338	26	12	20	40	1.88
3455193--3455649	44	10.2	43	80	7	259	29	14	17	38	1.89
3455386--3455649	44	6.1	44	83	2	275	30	15	17	37	1.90
3455802--3455830	12	2.3	13	94	5	51	17	0	0	82	0.66
3456809--3456834	9	2.9	9	100	0	52	23	0	0	76	0.78
3457321--3457369	22	2.2	23	82	17	59	65	4	0	30	1.11
3457801--3457838	17	2.2	17	90	0	58	76	5	0	18	0.97
3457263--3458147	442	2.0	437	91	2	1441	47	9	9	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3464682--3464715	14	2.5	14	90	4	52	52	2	0	44	1.16
3465589--3465624	19	1.9	19	94	5	65	55	0	0	44	0.99
3470006--3470048	3	14.3	3	90	9	70	32	0	0	67	0.91
3470113--3470153	15	2.8	14	88	7	55	0	9	4	85	0.73
3471004--3471044	20	2.0	20	85	4	55	24	7	0	68	1.15
3471635--3471677	21	2.1	21	86	4	61	41	0	6	51	1.29
3471775--3471993	104	2.1	104	93	0	366	42	6	9	41	1.63
3471806--3471974	52	3.2	52	64	12	130	42	6	10	41	1.64
3473461--3473517	25	2.3	26	75	9	64	52	0	1	45	1.11
3474954--3475022	29	2.3	30	85	14	90	18	0	28	52	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195