genome.fa.s112.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  6  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1079851--1079915	1	65.0	1	85	0	58	87	4	0	7	0.66
1079870--1079919	12	4.2	12	87	12	68	88	6	0	6	0.65
1079852--1079909	30	1.9	31	96	3	109	86	5	0	8	0.71
1080424--1080461	14	2.8	14	84	4	51	50	7	2	39	1.46
1080900--1080928	3	9.7	3	100	0	58	68	0	0	31	0.89
1081021--1081055	16	2.2	16	90	5	54	88	0	11	0	0.51
1081098--1081176	20	4.0	20	96	0	140	21	29	30	18	1.97
1081279--1081368	7	12.7	7	79	17	71	7	0	6	85	0.74
1081292--1081396	1	105.0	1	75	0	93	4	0	7	87	0.66
1081279--1081396	29	4.2	27	83	12	130	5	0	7	86	0.71
1081404--1082056	41	16.0	40	87	10	889	38	21	17	22	1.93
1081404--1082035	83	7.7	83	94	3	1081	38	21	17	22	1.93
1083075--1083174	18	5.4	18	71	16	62	11	12	1	76	1.08
1083064--1083144	8	9.2	8	76	19	65	11	17	0	71	1.13
1083076--1083162	9	9.6	10	75	21	52	11	12	0	75	1.04
1083069--1083175	10	11.8	9	73	19	80	11	12	0	75	1.09
1083057--1083153	46	2.1	48	90	7	157	11	15	0	73	1.10
1088061--1088090	15	2.1	14	93	6	51	6	36	6	50	1.55
1093376--1094282	156	5.8	156	94	2	1565	38	18	14	29	1.90
1094334--1094368	12	2.8	12	95	4	61	85	5	0	8	0.73
1094278--1094375	17	5.7	17	77	9	83	80	7	2	10	0.97
1094317--1094369	13	3.7	14	85	14	65	84	5	0	9	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1094317--1094372	29	1.9	30	96	3	105	85	5	0	8	0.73
1094690--1094736	19	2.5	19	82	0	58	21	19	29	29	1.97
1095360--1095388	3	9.7	3	100	0	58	68	0	0	31	0.89
1095481--1095516	17	2.2	17	90	5	56	88	0	11	0	0.50
1095559--1095637	20	4.0	20	96	0	140	21	29	30	18	1.97
1095680--1095724	23	2.0	23	86	8	65	40	2	8	48	1.47
1102415--1102499	22	3.9	22	72	9	66	34	22	11	31	1.90
1102472--1103100	131	4.8	132	77	6	551	27	16	14	41	1.87
1102492--1103097	263	2.3	263	79	6	629	27	16	14	41	1.87
1103007--1103335	110	3.0	109	75	10	301	26	17	15	41	1.88
1103326--1103380	22	2.5	21	82	8	65	30	12	16	40	1.86
1103535--1103600	22	3.0	22	75	16	64	30	22	15	31	1.95
1103239--1103670	220	2.0	219	82	5	523	23	16	17	42	1.88
1103717--1103795	37	2.1	37	83	4	97	17	13	18	49	1.80
1104051--1104091	13	3.2	13	80	16	50	80	2	17	0	0.82
1104926--1104954	10	2.9	10	100	0	58	10	10	37	41	1.73
1105227--1105251	9	2.8	9	100	0	50	12	0	0	88	0.53
1105316--1105345	15	2.1	15	93	6	53	66	0	0	33	0.92
1105350--1105389	3	13.3	3	100	0	80	67	0	0	32	0.91
1105515--1105636	15	8.7	14	68	12	65	48	31	2	18	1.61
1105566--1105653	28	3.1	27	85	4	104	45	34	2	18	1.62
1105581--1105743	30	5.6	29	81	4	139	46	33	2	18	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1105674--1105744	16	4.7	16	70	16	53	49	33	1	15	1.54
1105722--1105764	21	2.0	22	81	4	52	53	32	0	13	1.41
1105759--1105853	22	4.3	21	74	13	84	51	27	1	20	1.54
1105771--1105861	46	2.0	46	84	4	121	50	28	0	20	1.49
1105828--1105868	15	2.7	15	88	0	64	56	21	0	21	1.43
1108539--1108580	22	2.0	22	90	4	68	40	2	0	57	1.12
1112419--1112494	24	3.3	23	73	19	70	46	2	5	46	1.39
1119444--1119493	24	2.2	23	79	10	57	38	14	0	48	1.44
1126052--1126112	6	9.3	6	76	16	59	49	1	1	47	1.21
1129613--1129650	19	2.1	19	85	14	53	26	7	2	63	1.35
1149243--1149294	2	26.5	2	84	3	70	48	1	1	48	1.24
1155769--1155905	72	1.9	72	98	0	265	41	11	8	37	1.73
1161242--1161285	3	14.7	3	100	0	88	68	0	0	31	0.90
1161811--1161853	17	2.6	17	82	14	54	83	4	4	6	0.89
1163077--1163111	16	2.1	17	94	5	63	28	0	0	71	0.86
1163428--1163510	14	6.5	13	72	20	61	51	1	0	46	1.08
1163488--1163534	23	2.1	23	88	4	69	61	2	0	36	1.08
1163996--1164106	25	4.4	25	69	15	75	61	2	0	36	1.10
1164016--1164064	19	2.6	19	81	9	57	63	0	0	36	0.95
1164877--1164923	22	2.2	21	84	3	58	55	2	6	36	1.37
1165465--1165516	22	2.4	22	87	3	70	3	11	3	80	0.97
1165465--1165521	24	2.4	24	82	8	71	3	10	3	82	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1166778--1166810	12	2.6	13	85	9	50	15	9	0	75	1.03
1175124--1175187	30	2.2	29	85	2	83	64	10	4	20	1.43
1181627--1181652	11	2.4	11	100	0	52	0	7	0	92	0.39
1181679--1181914	116	2.0	118	90	3	370	37	15	12	34	1.86
1183441--1183471	2	15.5	2	100	0	62	51	0	0	48	1.00
1194790--1194846	10	5.1	11	76	17	55	36	0	1	61	1.07
1194785--1194845	32	1.9	32	83	6	79	34	0	1	63	1.04
1194865--1194912	18	2.7	18	83	3	62	62	0	0	37	0.95
1205224--1205274	23	2.2	23	85	0	66	39	1	13	45	1.55
1211180--1211231	2	26.0	2	100	0	104	0	50	0	50	1.00
1216966--1217032	23	3.1	22	75	12	68	70	1	13	14	1.25
1235802--1235858	30	1.9	30	85	0	78	36	19	5	38	1.74
1237566--1237604	14	2.8	14	77	14	53	58	10	0	30	1.31
1238787--1238841	25	2.2	25	75	15	60	56	0	0	43	0.99
1238820--1238860	6	7.0	6	81	15	50	65	0	0	34	0.93
1238821--1238892	33	2.3	31	85	4	90	61	0	0	38	0.96
1241027--1241064	10	3.8	10	100	0	76	0	10	39	50	1.37
1241031--1241074	20	2.2	20	87	0	61	0	6	45	47	1.29
1245464--1245488	2	12.5	2	100	0	50	48	0	0	52	1.00
1251282--1251306	1	25.0	1	100	0	50	100	0	0	0	0.00
1252427--1252458	2	16.0	2	100	0	64	0	50	0	50	1.00
1259992--1260029	3	12.7	3	94	0	67	68	2	0	28	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1264662--1264707	22	2.1	22	88	8	67	60	0	0	39	0.97
1264671--1264722	22	2.4	22	84	9	63	65	0	0	34	0.93
1264716--1264768	23	2.2	24	86	10	72	54	0	0	45	0.99
1264870--1264910	5	8.4	5	79	15	50	60	0	0	39	0.96
1264860--1264926	29	2.3	29	82	12	75	62	0	0	37	0.95
1264873--1264926	18	2.9	19	86	5	76	62	0	0	37	0.95
1264906--1265037	56	2.2	64	79	16	158	53	0	2	43	1.18
1272846--1272884	20	1.9	21	84	5	53	10	7	2	79	1.02
1278257--1278286	15	2.0	15	93	0	51	26	16	20	36	1.93
1294809--1294843	17	2.1	17	89	10	54	57	11	0	31	1.34
1298849--1298883	18	1.9	18	88	0	52	51	0	37	11	1.38
1307509--1307547	20	2.0	20	89	0	60	38	12	2	46	1.56
1312267--1312350	42	2.0	42	92	0	141	34	17	19	28	1.95
1315001--1315037	10	3.9	10	89	10	60	51	0	0	48	1.00
1316199--1316251	22	2.3	24	90	6	83	49	0	1	49	1.12
1316240--1316281	12	3.5	12	81	12	59	66	0	0	33	0.92
1316240--1316285	24	1.9	24	100	0	92	67	0	0	32	0.91
1316240--1316300	12	5.2	12	76	20	58	65	0	0	34	0.93
1316970--1317032	11	6.1	11	75	12	62	65	0	1	33	1.03
1317566--1317600	18	1.9	18	88	11	54	48	2	0	48	1.16
1318028--1318060	15	2.1	16	88	5	50	60	0	0	39	0.97
1318067--1318127	28	2.3	26	76	18	63	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1318404--1318448	14	3.3	14	79	14	58	40	0	0	60	0.97
1318391--1318448	27	2.1	27	84	12	75	39	0	1	58	1.08
1318405--1318470	28	2.3	27	87	7	87	40	0	0	59	0.98
1321983--1322017	18	1.9	18	88	0	52	54	0	2	42	1.15
1326295--1326319	2	12.5	2	100	0	50	48	0	0	52	1.00
1334985--1335014	2	15.5	2	93	6	53	50	0	0	50	1.00
1337254--1337298	24	2.0	21	87	12	63	44	0	0	55	0.99
1342243--1342280	19	2.0	19	89	0	58	34	23	7	34	1.84
1353712--1353752	10	4.2	10	79	17	50	39	0	0	60	0.96
1353707--1353745	19	2.1	19	90	9	62	41	0	0	58	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195