genome.fa.s112.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  29  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6561092--6561430	83	4.1	83	87	4	479	36	23	16	24	1.94
6562443--6562502	27	2.1	27	88	11	86	15	11	0	73	1.10
6562443--6562502	28	2.1	28	90	9	95	15	11	0	73	1.10
6562450--6562523	28	2.6	28	85	4	87	12	10	0	77	1.01
6565603--6565634	12	2.7	12	95	0	55	9	25	18	46	1.79
6570886--6571177	57	5.0	57	85	5	363	35	11	6	46	1.66
6570886--6571177	116	2.5	115	87	6	392	35	11	6	46	1.66
6571196--6571250	8	6.5	8	80	19	67	83	1	3	10	0.84
6571195--6571254	11	5.1	11	75	15	57	83	1	3	11	0.84
6571192--6571267	17	4.2	18	77	17	70	80	1	5	13	0.95
6571192--6571262	6	12.3	6	73	16	53	81	1	4	12	0.90
6571650--6571688	20	2.0	20	84	0	51	15	17	25	41	1.89
6571693--6571729	11	3.4	11	88	0	56	27	21	29	21	1.99
6572274--6572339	25	2.7	24	78	15	73	66	3	0	30	1.06
6572370--6572419	24	2.0	25	81	11	59	74	6	0	20	1.03
6585087--6585128	15	2.8	15	85	7	50	59	0	0	40	0.97
6585510--6585543	18	1.9	17	88	5	50	38	0	0	61	0.96
6603431--6603480	24	2.1	24	100	0	100	38	16	18	28	1.91
6606004--6606046	21	2.0	21	95	0	77	4	23	20	51	1.66
6606697--6606729	15	2.2	15	100	0	66	33	27	12	27	1.92
6607297--6607566	135	2.0	136	86	3	375	38	8	18	34	1.82
6607486--6607736	110	2.3	110	88	4	353	34	12	17	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6613129--6613169	21	1.9	22	85	5	57	31	12	19	36	1.89
6617062--6617127	33	2.0	33	84	0	87	34	16	12	36	1.86
6617844--6618024	93	1.9	93	86	0	254	37	16	12	33	1.86
6628477--6628523	21	2.2	21	82	14	53	65	0	25	8	1.20
6632790--6632829	9	4.4	9	87	9	55	2	5	2	90	0.62
6633617--6633674	22	2.6	23	81	10	75	12	15	0	72	1.12
6637473--6637578	8	12.4	8	70	11	50	59	1	1	36	1.19
6637466--6637509	18	2.4	18	92	0	70	54	0	0	45	0.99
6637491--6637575	43	2.0	43	83	4	109	63	2	2	31	1.20
6637724--6637775	23	2.3	23	86	0	68	32	3	1	61	1.25
6637768--6637841	10	7.6	10	73	11	55	33	0	10	55	1.35
6637778--6637847	18	3.7	18	75	11	59	37	1	8	52	1.41
6637764--6637841	37	2.1	39	85	4	106	32	0	10	57	1.32
6637880--6637923	19	2.3	19	84	0	52	20	2	9	68	1.28
6637880--6637931	21	2.6	19	74	11	50	21	1	9	67	1.29
6643709--6643746	16	2.4	17	86	8	53	15	18	2	63	1.43
6644985--6645075	6	15.5	6	70	19	50	31	1	1	65	1.06
6644985--6645073	41	2.3	39	81	12	105	31	1	1	66	1.06
6645057--6645112	21	2.6	22	83	13	73	46	0	0	53	1.00
6645063--6645115	20	2.7	19	80	13	63	49	0	0	50	1.00
6649192--6649369	88	2.0	86	95	2	320	27	13	18	40	1.88
6662040--6662086	21	2.2	21	81	7	60	74	0	8	17	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6668598--6668622	11	2.3	11	100	0	50	68	0	24	8	1.16
6668797--6668843	21	2.2	21	81	7	60	25	0	6	68	1.13
6672325--6672359	2	17.5	2	93	0	61	48	0	2	48	1.16
6678644--6678932	84	3.4	84	84	2	276	30	10	18	40	1.84
6678933--6679157	84	2.7	84	82	6	260	34	15	15	34	1.89
6684904--6684955	24	2.2	24	92	0	86	13	1	61	23	1.42
6685488--6685536	25	1.9	26	91	4	82	46	2	10	40	1.49
6689326--6689450	18	6.9	18	69	13	78	32	34	5	27	1.80
6689330--6689372	21	2.0	21	90	0	68	25	41	2	30	1.68
6695165--6695197	13	2.4	14	90	5	50	33	0	0	66	0.92
6696224--6696407	93	2.0	94	90	5	293	26	14	5	53	1.63
6706472--6706503	5	6.8	5	92	7	50	81	0	0	18	0.70
6714392--6714436	23	2.0	23	86	8	65	24	0	0	75	0.80
6714392--6714436	22	2.0	22	83	8	56	24	0	0	75	0.80
6714590--6714614	13	1.9	13	100	0	50	76	0	0	24	0.80
6714826--6714856	13	2.4	13	94	0	53	25	0	3	70	1.02
6725282--6725317	16	2.3	16	90	4	56	47	11	0	41	1.39
6729367--6729418	17	3.0	17	78	10	61	71	3	1	23	1.13
6729412--6729581	10	17.6	9	67	17	56	52	6	2	37	1.42
6729451--6729537	29	2.9	31	76	10	90	55	9	3	32	1.48
6729456--6729574	21	5.9	20	74	12	84	53	8	2	35	1.45
6729806--6729840	16	2.2	16	90	10	54	65	2	0	31	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6729969--6730042	38	1.9	38	88	0	112	64	6	1	27	1.26
6730140--6730165	11	2.4	11	100	0	52	7	0	7	84	0.77
6730272--6730313	10	4.3	10	81	3	50	30	2	4	61	1.29
6730281--6730413	9	14.6	9	72	12	94	37	2	3	56	1.30
6730278--6730323	20	2.3	20	85	3	58	39	2	4	54	1.32
6730520--6730577	9	5.8	10	80	13	66	32	0	6	60	1.23
6730459--6730571	51	2.2	51	80	10	124	33	0	6	59	1.28
6730459--6730587	20	6.3	20	75	14	88	31	1	5	62	1.27
6731533--6731577	22	2.1	22	88	12	67	46	6	0	46	1.29
6732659--6732750	3	32.0	3	74	8	66	65	2	4	28	1.23
6732660--6732740	11	7.6	11	75	15	64	64	1	4	29	1.22
6734712--6734774	27	2.3	27	88	2	99	42	7	15	33	1.76
6737021--6737753	234	3.1	233	80	5	721	31	12	6	48	1.66
6751936--6751983	3	15.3	3	87	8	69	33	2	2	62	1.18
6752151--6752200	22	2.2	22	82	10	57	24	2	6	68	1.23
6753332--6753384	19	2.6	22	82	11	60	7	0	13	79	0.93
6753332--6753396	26	2.4	28	84	5	89	9	0	12	78	0.96
6753346--6753403	26	2.2	27	84	3	73	12	0	12	75	1.04
6753647--6753845	50	4.1	48	81	5	220	38	23	10	28	1.88
6753647--6753845	97	2.0	97	83	6	251	38	23	10	28	1.88
6753674--6754078	214	1.9	213	85	4	564	37	22	12	27	1.90
6753886--6754251	97	3.8	99	83	5	460	38	22	11	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6753881--6754251	49	7.6	50	83	5	422	38	22	11	27	1.89
6765701--6765735	18	1.9	18	88	0	52	25	5	2	65	1.28
6765720--6765757	3	12.3	3	88	5	58	28	0	2	68	1.03
6765932--6765981	22	2.2	23	86	10	68	24	2	8	66	1.29
6767059--6767093	1	35.0	1	88	0	52	0	0	5	94	0.32
6767060--6767120	7	8.6	7	78	10	52	6	0	9	83	0.80
6767059--6767173	20	5.6	19	67	17	61	11	0	8	80	0.92
6769981--6770019	17	2.3	17	90	0	60	38	5	25	30	1.78
6770322--6770346	2	12.5	2	100	0	50	52	0	0	48	1.00
6775797--6775832	18	1.9	19	94	5	65	33	11	0	55	1.35
6784808--6784859	6	8.8	6	85	4	52	84	5	7	1	0.84
6784892--6784947	24	2.4	24	87	3	78	62	1	21	14	1.40
6790979--6791035	27	2.1	27	86	0	78	14	7	26	52	1.66
6792630--6792676	25	1.9	25	86	4	69	36	0	14	48	1.44
6793313--6793412	49	2.0	49	90	3	157	52	5	4	39	1.42
6814634--6814691	22	2.8	21	72	12	57	63	6	3	25	1.35
6821032--6821322	42	6.9	42	80	5	275	27	9	13	49	1.73
6821024--6821323	127	2.4	126	81	4	334	27	10	12	50	1.73
6821836--6821899	32	2.0	32	90	6	103	56	4	6	32	1.45
6830530--6830559	15	2.0	15	93	0	51	33	23	26	16	1.96
6832788--6832829	22	1.9	22	90	0	66	66	2	7	23	1.28
6835454--6835505	24	2.2	24	96	0	95	44	3	0	51	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6836007--6836061	28	2.0	27	89	3	83	25	14	9	50	1.72
6839722--6839757	16	2.2	16	90	0	54	8	5	0	86	0.72
6840153--6840379	61	3.7	59	70	11	165	40	16	3	40	1.65
6840725--6840776	25	2.0	27	92	7	90	42	19	0	38	1.51
6840726--6840788	25	2.4	26	86	5	83	44	17	0	38	1.49
6841833--6841932	43	2.3	43	80	0	110	24	11	16	49	1.77
6842735--6842808	34	2.2	33	79	11	78	48	18	1	31	1.57
6843336--6843375	19	2.0	20	85	4	55	20	5	7	67	1.34
6843543--6843582	12	3.2	12	82	10	53	65	17	12	5	1.44
6844269--6844295	13	2.1	13	100	0	54	77	0	0	22	0.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195