genome.fa.s112.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  124  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21280335--21280458	62	2.0	62	93	0	212	25	17	21	35	1.95
21280397--21280495	42	2.4	42	91	1	155	24	18	23	34	1.96
21280293--21280495	104	2.0	104	94	2	354	23	18	22	35	1.96
21280499--21280526	10	2.8	10	100	0	56	92	7	0	0	0.37
21280640--21280669	9	3.4	9	90	9	53	90	0	0	10	0.47
21280811--21280886	6	12.5	6	77	16	68	21	0	0	78	0.74
21280811--21280887	11	6.5	11	74	20	66	22	0	0	77	0.76
21280815--21280887	20	3.8	19	79	13	80	23	0	0	76	0.78
21281976--21282030	10	5.9	9	81	10	58	14	3	1	80	0.94
21281978--21282043	26	2.5	27	80	14	75	15	4	1	78	0.98
21282051--21282405	117	3.0	117	85	7	493	45	8	12	33	1.72
21282051--21282405	58	6.0	60	86	7	476	45	8	12	33	1.72
21285516--21285588	19	3.9	18	72	18	60	73	0	19	6	1.04
21286824--21287161	41	8.1	41	88	1	496	22	15	23	37	1.93
21287268--21287304	13	2.7	14	91	4	58	83	2	13	0	0.74
21287472--21287599	6	21.2	6	79	9	100	21	2	0	75	0.97
21287472--21287600	11	11.3	11	79	12	102	22	2	0	74	0.98
21287472--21287600	17	7.9	17	78	10	103	22	2	0	74	0.98
21287875--21287981	6	17.5	6	81	12	85	17	3	0	77	0.97
21287923--21288053	3	42.7	3	77	11	94	28	2	1	67	1.11
21287878--21288050	18	9.4	18	72	17	90	23	4	1	70	1.14
21288306--21290974	858	3.1	849	83	8	3107	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21290175--21290227	26	2.0	26	92	0	88	28	18	24	28	1.98
21294637--21294689	26	2.0	26	85	0	70	32	22	16	28	1.96
21296387--21296439	26	2.0	26	92	0	88	28	18	24	28	1.98
21297270--21297322	26	2.0	26	96	0	97	28	20	24	26	1.99
21292014--21299488	902	8.4	897	85	3	9203	25	24	24	25	2.00
21299074--21299126	26	2.0	26	92	0	88	28	22	22	26	1.99
21298744--21300221	733	2.0	736	86	3	2053	24	26	26	22	2.00
21300711--21300763	26	2.0	26	92	0	88	28	18	24	28	1.98
21299484--21309634	904	11.4	901	82	6	11338	25	24	24	25	2.00
21301602--21301654	26	2.0	26	92	0	88	28	22	24	24	2.00
21302505--21302557	26	2.0	26	92	0	88	28	22	22	26	1.99
21305137--21305189	26	2.0	26	100	0	106	26	20	26	26	1.99
21303376--21309634	889	7.0	900	81	7	6683	25	23	25	25	2.00
21306027--21306131	26	4.0	26	87	0	147	29	17	22	30	1.96
21306982--21307033	25	2.0	26	92	3	88	28	21	23	26	1.99
21307848--21307899	26	2.0	26	92	0	86	28	17	23	30	1.97
21307415--21309630	886	2.5	889	86	3	3012	25	24	24	25	2.00
21310398--21310450	26	2.0	26	92	0	88	26	16	26	30	1.97
21311301--21311353	26	2.0	26	92	0	88	26	16	26	30	1.97
21313204--21313254	26	2.0	26	92	0	84	25	17	29	27	1.98
21314394--21314446	26	2.0	26	96	0	97	26	18	26	28	1.98
21316169--21316240	26	2.8	26	97	0	135	30	19	23	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21317097--21317149	26	2.0	26	96	0	97	28	20	24	26	1.99
21313614--21319443	901	6.5	899	85	4	7627	24	24	25	25	2.00
21319710--21319762	26	2.0	26	88	0	79	30	20	22	26	1.98
21318652--21320268	825	2.0	819	88	3	2424	23	24	26	24	2.00
21320611--21320663	26	2.0	26	88	0	79	28	18	22	30	1.98
21321506--21321558	26	2.0	26	85	0	70	28	18	24	28	1.98
21319473--21329074	895	10.7	897	87	3	12962	24	24	25	25	2.00
21322408--21322460	26	2.0	26	92	7	90	26	18	28	26	1.98
21324184--21324236	26	2.0	26	92	0	88	30	20	22	26	1.98
21325079--21325131	26	2.0	26	92	0	88	28	18	24	28	1.98
21325977--21326026	26	1.9	26	100	0	100	28	20	28	24	1.99
21326868--21326920	26	2.0	26	96	0	97	26	18	26	28	1.98
21327762--21327814	26	2.0	26	96	0	97	26	20	24	28	1.99
21328654--21328706	26	2.0	26	92	7	90	28	22	22	26	1.99
21328410--21329733	663	2.0	661	85	2	1778	24	26	27	21	1.99
21330208--21330260	26	2.0	26	96	0	97	28	20	22	28	1.99
21331107--21331159	26	2.0	26	92	0	88	28	18	24	28	1.98
21332005--21332057	26	2.0	26	92	0	88	28	18	24	28	1.98
21329072--21334061	898	5.6	901	85	4	6399	25	23	25	25	2.00
21332903--21332955	26	2.0	26	88	0	79	30	22	20	26	1.98
21334850--21334902	26	2.0	26	96	0	97	28	18	26	26	1.98
21335591--21335643	26	2.0	26	89	7	81	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21334131--21335675	745	2.1	743	88	2	2262	26	22	24	26	2.00
21336487--21336537	26	2.0	26	92	0	84	29	17	27	25	1.98
21334876--21338170	899	3.7	886	84	4	4242	25	23	24	25	2.00
21337396--21337447	26	2.0	26	100	0	104	26	19	26	26	1.99
21339909--21339959	26	2.0	26	92	0	84	27	15	27	29	1.96
21338211--21343215	901	5.6	891	80	6	5274	25	23	25	26	2.00
21340765--21340817	26	2.0	26	100	0	106	26	20	26	26	1.99
21341666--21341718	26	2.0	26	96	0	97	28	20	24	26	1.99
21342575--21342625	26	1.9	27	88	11	79	29	13	27	29	1.94
21344157--21344209	26	2.0	26	100	0	106	26	20	26	26	1.99
21344911--21345271	159	2.3	159	84	0	436	23	27	27	21	1.99
21345942--21345993	26	2.0	26	92	0	86	25	17	26	30	1.97
21345967--21346333	158	2.3	157	83	2	439	24	30	27	18	1.98
21347006--21347058	26	2.0	26	85	0	70	28	15	26	30	1.96
21346134--21349443	900	3.6	906	87	2	4729	25	23	25	26	2.00
21350482--21350534	26	2.0	26	85	7	72	28	16	22	32	1.96
21349705--21351440	879	2.0	878	88	2	2605	26	23	24	26	2.00
21351387--21351755	159	2.3	158	82	4	447	22	27	28	21	1.99
21355058--21355110	26	2.0	26	92	0	88	28	18	24	28	1.98
21351546--21355656	877	4.6	890	84	5	5042	25	23	24	25	2.00
21356148--21356207	26	2.2	28	82	5	70	28	10	16	45	1.80
21357636--21357688	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21357797--21359989	713	3.1	711	89	1	3225	25	23	24	26	2.00
21359963--21360015	26	2.0	26	96	0	97	26	18	26	28	1.98
21360842--21360894	26	2.0	26	85	0	70	28	15	24	32	1.95
21363249--21363300	26	2.0	26	96	0	95	26	17	26	28	1.97
21364152--21364204	26	2.0	26	100	0	106	26	20	26	26	1.99
21362378--21366518	900	4.6	885	87	2	5583	25	23	24	25	2.00
21368845--21368896	26	2.0	26	92	0	86	30	15	25	28	1.96
21369747--21369814	26	2.6	26	97	0	127	27	17	25	29	1.97
21370581--21370633	26	2.0	26	89	7	81	28	18	24	28	1.98
21371462--21371514	26	2.0	26	88	0	79	30	20	24	24	1.99
21373233--21373282	25	2.0	26	84	4	66	26	18	26	30	1.98
21370577--21377166	888	7.4	884	83	7	7413	25	23	24	25	2.00
21374142--21374192	25	2.0	26	92	3	86	29	21	21	27	1.99
21375030--21375080	26	2.0	26	92	0	84	27	21	21	29	1.99
21372367--21377166	889	5.4	899	84	6	5779	25	23	25	25	2.00
21375932--21375984	26	2.0	26	96	0	97	26	18	26	28	1.98
21380319--21380371	26	2.0	26	100	0	106	26	16	26	30	1.97
21377193--21385261	906	9.0	903	83	7	9021	25	23	24	26	2.00
21381214--21381266	26	2.0	26	100	0	106	26	20	26	26	1.99
21381444--21381472	8	3.8	8	95	4	51	27	27	44	0	1.54
21382143--21382195	26	2.0	26	92	0	88	28	18	26	26	1.98
21384780--21384832	26	2.0	26	85	0	70	30	16	24	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21384806--21385734	473	2.0	476	84	2	1231	24	23	25	27	2.00
21387007--21387059	26	2.0	26	92	0	88	30	18	24	26	1.98
21387907--21387959	26	2.0	26	92	0	88	26	16	28	28	1.97
21386158--21388834	903	3.0	897	87	3	3828	25	23	25	25	2.00
21390148--21390264	6	20.0	6	81	8	127	17	2	0	79	0.84
21390148--21390265	11	10.2	11	80	13	114	18	2	0	78	0.86
21391317--21391356	17	2.4	16	84	8	53	22	5	0	72	1.04
21391343--21391413	6	11.5	6	75	15	56	14	4	1	80	0.93
21391332--21391397	11	5.9	11	76	15	55	15	4	1	78	0.98
21391344--21391413	27	2.6	25	78	17	68	14	4	1	80	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195