genome.fa.s112.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  190  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34066065--34066113	11	4.4	11	89	5	80	91	8	0	0	0.41
34066065--34066118	17	3.1	17	89	10	83	90	9	0	0	0.45
34066074--34066127	16	3.4	16	89	2	83	88	11	0	0	0.50
34066067--34066127	25	2.5	24	86	5	88	88	11	0	0	0.51
34066066--34066127	24	2.5	25	82	10	74	88	11	0	0	0.51
34066065--34066118	1	54.0	1	81	0	63	90	9	0	0	0.45
34066322--34066403	24	3.6	22	73	12	69	30	0	4	64	1.14
34066309--34066411	16	6.7	16	70	21	62	29	0	6	64	1.19
34066433--34066466	17	1.9	18	88	5	52	14	2	2	79	0.97
34067448--34067485	20	1.9	20	89	10	60	15	0	0	84	0.63
34067506--34068150	60	10.8	59	85	9	823	45	7	12	34	1.70
34071454--34071722	136	2.0	136	99	0	529	35	17	15	31	1.91
34093418--34093442	12	2.1	12	100	0	50	24	28	24	24	2.00
34098413--34098452	21	1.9	21	89	0	62	30	12	0	57	1.36
34102415--34102456	19	2.3	18	92	8	75	0	28	0	71	0.86
34103153--34103201	21	2.3	21	85	0	62	61	2	2	34	1.19
34104495--34105400	456	2.0	456	89	1	1404	29	14	16	39	1.88
34110927--34110972	18	2.5	19	86	10	69	0	28	0	71	0.86
34113813--34113878	28	2.3	30	84	7	84	57	0	0	42	0.98
34113857--34113896	20	2.0	20	85	9	55	67	0	0	32	0.91
34126084--34126121	2	19.0	2	100	0	76	50	0	0	50	1.00
34136445--34136472	13	2.2	13	100	0	56	42	14	14	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34140269--34140322	24	2.2	24	83	6	65	31	18	31	18	1.95
34140280--34140325	24	2.0	23	91	4	74	23	21	34	19	1.96
34147179--34147214	2	18.0	2	100	0	72	50	0	0	50	1.00
34149100--34149133	16	2.1	16	100	0	68	26	26	17	29	1.98
34161997--34162024	14	2.0	14	100	0	56	0	7	0	92	0.37
34173972--34174033	24	2.6	24	78	14	65	45	3	1	50	1.27
34177918--34177981	31	2.1	31	87	0	92	54	4	7	32	1.50
34181544--34181662	59	2.0	59	100	0	238	15	13	36	35	1.86
34185774--34185824	23	2.1	24	82	7	59	23	0	3	72	1.01
34185926--34185966	20	2.0	20	86	9	57	68	0	0	31	0.90
34185934--34185977	21	2.1	21	83	8	54	75	0	2	22	0.92
34186121--34186165	22	2.0	22	82	0	54	62	0	4	33	1.15
34186370--34186459	30	3.1	28	78	15	85	56	0	7	35	1.28
34186823--34186873	24	2.1	24	96	0	93	64	1	5	27	1.27
34186808--34186869	24	2.7	22	78	9	70	62	1	3	32	1.20
34186881--34187782	48	19.1	48	77	10	704	30	10	19	39	1.85
34186881--34187782	93	9.6	95	75	10	663	30	10	19	39	1.85
34186894--34187673	189	4.1	190	77	10	651	30	10	18	40	1.85
34186884--34187673	284	2.8	285	80	5	787	30	10	18	40	1.85
34186886--34187673	332	2.4	326	81	8	896	30	10	18	40	1.85
34187369--34187632	141	1.9	139	85	4	370	29	12	18	39	1.87
34186881--34187782	140	6.4	142	76	9	720	30	10	19	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34188979--34189022	21	2.1	21	83	8	54	75	2	2	20	1.03
34197908--34197942	17	2.2	16	90	10	54	20	0	2	77	0.90
34199081--34199144	23	2.7	23	72	15	60	45	1	4	48	1.32
34208755--34208819	33	2.0	33	96	0	121	50	16	20	12	1.77
34215614--34215647	2	17.0	2	100	0	68	50	50	0	0	1.00
34230071--34230105	2	17.5	2	100	0	70	0	48	0	51	1.00
34237681--34237724	6	7.5	6	87	5	63	50	0	0	50	1.00
34237687--34237724	17	2.2	18	95	4	69	47	0	0	52	1.00
34237681--34237725	23	2.0	23	90	0	72	48	0	0	51	1.00
34238068--34238122	27	2.0	27	83	13	69	43	0	1	54	1.10
34238083--34238129	14	3.4	14	77	13	53	40	0	0	59	0.97
34240426--34240488	32	2.0	32	87	6	92	28	1	4	65	1.22
34246221--34246274	15	3.6	14	85	12	63	62	9	1	25	1.35
34246250--34246304	20	2.7	21	82	5	67	58	9	5	27	1.51
34247895--34247924	3	10.0	3	100	0	60	66	0	0	33	0.92
34261845--34261941	48	2.0	47	92	2	158	24	20	16	38	1.93
34263252--34263320	26	2.4	27	79	16	68	44	5	4	44	1.47
34269075--34269251	98	1.8	98	92	0	300	29	15	20	34	1.93
34274930--34274954	13	1.9	13	100	0	50	88	0	0	12	0.53
34277053--34277145	30	3.1	29	75	4	78	38	7	5	48	1.54
34277196--34277233	19	2.0	20	85	15	53	57	0	2	39	1.12
34281778--34281860	35	2.4	36	74	11	84	45	3	3	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34283303--34283334	5	6.6	5	92	7	57	18	0	0	81	0.70
34283302--34283337	14	2.6	14	95	4	65	19	0	0	80	0.71
34288003--34288049	13	3.5	13	77	13	51	80	2	8	8	0.97
34290704--34290733	16	1.9	15	93	6	51	30	3	20	46	1.66
34309975--34310000	2	13.0	2	100	0	52	50	0	0	50	1.00
34320455--34320547	43	2.2	43	92	0	150	35	15	7	41	1.75
34328562--34328939	205	1.8	206	87	6	561	37	6	10	44	1.66
34344691--34344720	11	2.6	11	94	5	51	60	0	0	40	0.97
34344962--34345034	29	2.5	29	86	0	92	21	9	16	52	1.72
34344983--34345044	29	2.1	29	84	0	79	24	8	16	51	1.71
34345157--34345213	26	2.2	26	87	3	80	33	8	1	56	1.41
34355102--34355247	3	46.7	3	70	23	72	33	3	0	62	1.17
34355093--34355157	33	2.0	32	88	5	96	36	1	0	61	1.05
34355080--34355243	25	6.3	24	70	22	91	32	3	0	64	1.14
34355070--34355247	20	8.6	21	70	20	76	31	2	1	64	1.18
34356036--34356079	5	8.0	5	90	9	52	20	0	0	79	0.73
34356039--34356076	6	6.5	6	88	11	53	18	0	0	81	0.69
34356036--34356079	10	3.9	11	83	16	63	20	0	0	79	0.73
34356102--34356262	58	2.8	58	85	7	186	47	6	9	36	1.63
34356320--34356364	18	2.5	18	81	0	54	15	4	2	77	1.02
34367736--34368102	41	8.9	41	81	6	388	25	16	19	38	1.92
34367733--34368102	83	4.5	83	83	6	434	25	15	20	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34368318--34368486	3	56.3	3	68	24	58	30	4	0	64	1.18
34368314--34368378	19	3.7	17	77	18	62	30	1	0	67	1.00
34368319--34368433	24	5.0	24	75	15	77	31	3	0	64	1.16
34368331--34368475	32	4.8	31	67	19	74	31	5	0	62	1.23
34368315--34368486	56	3.2	53	81	10	201	29	4	0	65	1.17
34368332--34368488	14	11.9	13	67	20	60	30	5	0	63	1.23
34368926--34368966	20	2.0	20	90	9	66	60	0	39	0	0.96
34369286--34369328	18	2.3	18	88	4	59	18	2	2	76	1.00
34369294--34369332	18	2.1	19	95	4	71	17	2	0	79	0.84
34369346--34369579	58	3.9	58	78	10	247	45	5	11	38	1.63
34369358--34369582	64	3.7	59	79	10	215	44	4	12	39	1.63
34370711--34370762	26	2.0	26	100	0	104	23	23	30	23	1.99
34384735--34384814	40	2.0	40	88	9	119	33	16	12	37	1.86
34392978--34393041	27	2.4	27	100	0	128	51	0	3	45	1.17
34392974--34393078	22	4.7	21	71	24	65	51	0	2	44	1.22
34393110--34393293	31	5.8	31	70	22	118	54	1	1	42	1.14
34393110--34393293	15	11.6	17	73	22	70	54	1	1	42	1.14
34393116--34393294	66	2.9	63	76	17	164	54	1	1	43	1.14
34393111--34393296	39	4.8	40	66	24	89	55	1	1	42	1.14
34393379--34393419	16	2.7	15	85	7	55	48	2	0	48	1.14
34393379--34393444	15	4.5	16	70	24	56	48	3	0	48	1.17
34393389--34393454	26	2.6	26	88	9	100	50	3	0	46	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34393389--34393454	25	2.6	25	88	9	91	50	3	0	46	1.16
34393575--34393607	14	2.4	14	90	5	50	30	6	0	63	1.18
34393993--34394026	7	4.6	7	86	13	50	61	0	0	38	0.96
34394281--34394331	21	2.5	21	96	3	95	49	0	0	50	1.00
34394321--34394370	25	2.0	24	84	3	64	62	0	0	38	0.96
34416039--34416066	4	7.0	4	100	0	56	75	0	25	0	0.81
34416639--34416672	2	17.0	2	93	0	59	47	0	2	50	1.16
34419105--34419147	2	21.0	2	85	4	59	51	2	2	44	1.27
34434901--34434935	1	35.0	1	88	0	52	0	0	5	94	0.32
34444470--34444516	25	1.9	25	83	12	62	48	4	4	42	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195